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Oryza sativa
cluster # 12355 cluster # 12355       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12355#0 length = 1648 sequences # 7  
consensus_12355#1 length = 357 sequences # 1  
consensus_12355#2 length = 349 sequences # 1  
consensus_12355#3 length = 171 sequences # 1  

consensusID : consensus_12355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1648
fasta sequence
                              [AGGAGAGGGAGCGGCGAATCGAAGCG-ANAA-GCAGCAGCAGCAGCAACTCGCGCTGTTCATTTATTCGCACCAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAGCCAAACCAACTGACGGACGCGAGCGAA-NGANG-A-AGTTCTTGAAGTTGAAGCAGCCGCCTCGCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTTTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTNGAGCGCCGCCGTCCATCCGTCCCCATGGATCCCCGCAGTCGCGCGGATCGCGGCG-AGTAGGGAGGGAGGAGGGGAGGGGAGGGGGAAGCGGGTTCCGGGAGGAGAGGCGTCCTGCTCGAGCAAGGAGCTTGTGGGGGGAGGTAGATGGACGCGAACGCGGGCTCATTCGTCGCCGTCCGCCGGCTCGCCGGCTCCGAGCGCGCCGCGGGAGCGGCCGCCTTCCACCACTCGTCTTCGGCGGAGGTCGTGACGGGGTCGACGGCGTGGATCGGGAAGGGGCTGTCTTGCGTGTGCGCCCAGAGGAGGGACAGCGACGCGCGCCTCTCCTTCGATTTGACGCCAGTTCAGGAAGAGTGCCTACAGAGGTTACAGAACCGGTTAGAAGTTCAGTATGATAGTTCAAACAGTGATCATCAGGAAGCATTGAAGGACCTCTGGCGTGCTTCTTTTCCTGGAGCTGAGCTTCGGGGACTAATATCAGAACAATGGAAAGAGATGGGCTGGCAAGGGAAAGATCCATCTACAGATTTTAGAGGTGGAGGCTTCATCTCCTTGGAGAACTTAGTGTACTTCTCCAAGAACTTCCCAAAATCTTTTCAGGAACTTCTTCGGAAGCAGAATGGTGACCGTGCAATTTGGGAGTATCCATTTGCTGTGGCTGGTGTAAATATAACATTCATGCTCATCCAGATGCTTGATCTTCAATCAGTTAAACCAAGGTCGTTCATCGGAGCAGTTTTTCTAAAGCTACTTTCTGAAAATGATCAGGCTTTTGACATTCTCTACTGCATAACCTTCAAGTTGATGGATCAGCAATGGCTTGACATGCATGCCACTTACATGGACTTCAATACGGTCATGAAGTCCACACGACGTCAGCTAGAAAGGGAGCTCTTGCTTGAAGATATTCAGCGGATTGAGGACATGCCATCATACAAGCTTTTGGCCCGCTAGCTAGTAACTGAACCATAACATGGCTACGTGCTGCAAGGCTTGAGTTGCATAAGGGTTGCAACTAGTGCCCACAAACAGTGTGAATTCCAAAACGCAGATGCACTTGTTTCCTCTCAAGTTTAGGTACTCTGTTAACCTGTCTCCAAATTACAAGATAGAGGTCTCTTGGTCATAGCACGCCACGTAGGGTAACTGAAGTGTCCGATCAGCTGCCAGGGCAGAGTGTTTGTAGGTTGGGTGTTTTGTTGCAGTTTGGTTGATGCCCGTCATACCACGAAATGAAGTGCTTCTAGGTTTTCCTTTTTCCTTTATAAACAAGAGGCTCTTGTGAAAGCTAATCTGAGTGTCTTCTGTAGTGTACCATATTTGCATAATTGATAGTGTTCAGTTCAAAAAAAAA]

[+] EMBL AU066250             [AGGAGAGGGAGCGGCGAATCGAAGCG ANAACGCAGCAGCAGCAGCAACTCGCGCTGTTCATTTATTCGCACCAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAGCCAAACCAACTNACGGACGCGAGCGAA  GANG ANAGTTCTTGAAGTTGAAGCAGCCNCCTCGCTCGCCTCG GGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTTTTNCTTTCCTTTCCTGCGTCCTTGGGATCCTCCCGTGCGATCTCGCCGTGGGTNGAGCGCCGCCGTCCATCCGTCCCCATGGATCCCCGCAGTCG GCGGATCG GCCGAAGTAGGGAAGGAAGAAGGGAAGGGAAGGGGAAGCNGGTTCCCGGA GAGAGGCGTCt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU033308             [AGGAGAGGGAGCGGCGAATCGAAGCGAANAA GCAGCAGCAGCAGCAACTCGCGCTGTTCATTTATTCGCACCAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAGCCAAACCAACTGACGGACGCGAGCNAA NGANGNA AGTTCTTGAAGTTGAAGCAGCCGCCTCGCTCGCNTCGCGGCCCTCGCTTGNCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTTTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGACCGTNCGATCTNGACGTGGGTNGAGCGACGACGTCCATCCGTTCCCATGGATCCCCGCAGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU091357             [                                                         TTCATTTATTCGCACCAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAGCCAAACCAACTGACGGACGCGAGCGAAGCGAAG A AGTTCTTGAAGTTGAAGCAGCCGCCTCGCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTTTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTGGAGCGCCGCCGTCCATCCGTCCCCATGGATCCCCGCAGTCGCGCGGATCGCGGCG AGTAGGGAGGGAGGAGGGGAGGGGAGGGGGAAGCGGGTTCCGGGAGGAGAGGCGTCCTGCTCGAGCAAGGAGCTTGTGGGGGGAGGTAGATGGACGCGAACGCGGGCTCATTCGTCGCCGTCCGCCGGCTCGCCGGCTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK069478             [                                                                                                                                                                TCTTGAAGTTGAAGCAGCCGCCTCGCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTTTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTGGAGCGCCGCCGTCCATCCGTCCCCATGGATCCCCGCAGTCGCGCGGATCGCGGCG AGTAGGGAGGGAGGAGGGGAGGGGAGGGGGAAGCGGGTTCCGGGAGGAGAGGCGTCCTGCTCGAGCAAGGAGCTTGTGGGGGGAGGTAGATGGACGCGAACGCGGGCTCATTCGTCGCCGTCCGCCGGCTCGCCGGCTCCGAGCGCGCCGCGGGAGCGGCCGCCTTCCACCACTCGTCTTCGGCGGAGGTCGTGACGGGGTCGACGGCGTGGATCGGGAAGGGGCTGTCTTGCGTGTGCGCCCAGAGGAGGGACAGCGACGCGCGCCTCTCCTTCGATTTGACGCCAGTTCAGGAAGAGTGCCTACAGAGGTTACAGAACCGGTTAGAAGTTCAGTATGATAGTTCAAACAGTGATCATCAGGAAGCATTGAAGGACCTCTGGCGTGCTTCTTTTCCTGGAGCTGAGCTTCGGGGACTAATATCAGAACAATGGAAAGAGATGGGCTGGCAAGGGAAAGATCCATCTACAGATTTTAGAGGTGGAGGCTTCATCTCCTTGGAGAACTTAGTGTACTTCTCCAAGAACTTCCCAAAATCTTTTCAGGAACTTCTTCGGAAGCAGAATGGTGACCGTGCAATTTGGGAGTATCCATTTGCTGTGGCTGGTGTAAATATAACATTCATGCTCATCCAGATGCTTGATCTTCAATCAGTTAAACCAAGGTCGTTCATCGGAGCAGTTTTTCTAAAGCTACTTTCTGAAAATGATCAGGCTTTTGACATTCTCTACTGCATAACCTTCAAGTTGATGGATCAGCAATGGCTTGACATGCATGCCACTTACATGGACTTCAATACGGTCATGAAGTCCACACGACGTCAGCTAGAAAGGGAGCTCTTGCTTGAAGATATTCAGCGGATTGAGGACATGCCATCATACAAGCTTTTGGCCCGCTAGCTAGTAACTGAACCATAACATGGCTACGTGCTGCAAGGCTTGAGTTGCATAAGGGTTGCAACTAGTGCCCACAAACAGTGTGAATTCCAAAACGCAGATGCACTTGTTTCCTCTCAAGTTTAGGTACTCTGTTAACCTGTCTCCAAATTACAAGATAGAGGTCTCTTGGTCATAGCACGCCACGTAGGGTAACTGAAGTGTCCGATCAGCTGCCAGGGCAGAGTGTTTGTAGGTTGGGTGTTTTGTTGCAGTTTGGTTGATGCCCGTCATACCACGAAATGAAGTGCTTCTAGGTTTTCCTTTTTCCTTTATAAACAAGAGGCTCTTGTGAAAGCTAATCTGAGTGTCTTCTGTAGTGTACCATATTTGCATAATTGATAGTG                 ]
[+] EMBL CB000479             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCCTACAGAGGTTACAGAACCGGTTAGAAGTTCCTTATGATAGTTCAAACAGTGATCATCAGGAAGCATTGAAGGACCTCTGGCGTGCTTCTTTTCCTGGAGCTGAGCTTCGGGGACTAATATCAGAACAATGGAAAGAGATGGGCTGGCAAGGGAAAGATCCATCTACAGATTTTAGAGGTGGAGGCTTCATCTCCTTGGAGAACTTAGTGTACTTCTCCAAGAACTTCCCAAAATCTTTTCAGGAACTTCTTCGGAAGCAGAATGGTGACCGTGCAATTTGGGAGTATCCATTTGCTGTGGCTGGTGTAAATATAACATTCATGCTCATCCAGATGCTTGATCTTCAATCAGTTAAACCAAGGTCGTTCATCGGAGCAGTTTTTCTAAAGCTACTTTCTGAAAATGATCAGGCTTTTGACATTCTCTACTGCATAACCTTCAAGTTGATGGATCAGCAATGGCTTGACATGCATGCCACTTACATGGACTTCAATACGGTCATGAAGTCCACACGACGTCAGCTAGAAAGGGAGCTCTTGCTTGAAGATATTCAGCGGATTGAGGACATGCCATCATACAAGCTTTTGGCCCGCTAGCTAGTAACTGAACCATAACATGGCTACGTGCTGCAAGGCTTGAGTTGCATAAGGGTTGCAACTAGTGCCCACAAACAGTGTGAATTCCAAAACGCAGATGCACTTGTTTCCTCTCAAGTTTAGGTACTCTGTTAACCTGTCTCCAAATTACAAGATAGAGGTCTCTTGGCCATAGCACGCCACGTAGGGTAACTGAAGTGTCCGATCAGCTGCCAGGGC                                                                                                                                                                                     ]
[+] EMBL AU176545             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGCTTTTGGCCCGCTAGCTAGTAACTGAACCATAACATGGCTACGTGCTGCAAGGCTTGAGTTGCATAAGGGTTGCAACTAGTGCCCACAAACAGTGTGAATTCCAAAACGCAGATGCACTTGTTTCCTCTCAAGTTTAGGTACTCTGTTAACCTGTCTCCAAATTACAAGATAGAGGTCTCTTGGTCATAGCACGCCACGTAGGGTAACTGAAGTGTCCGATCAGCTGCCAGGGCAGAGTGTTTGTAGGTTGGGTGTTTTGTTGCAGTTTGGTTGATGCCCGTCATACCACGAAATGAAGTGCTTCTAGGTTTTCCTTTTTCCTTTATAAACAAGAGGCTCTTGTGAAAGCTAATCTGAGTGTCTTCTGTAGTGTACCATATTTGCATAATTGATAGTGTTCAGTTCAAAAA    ]
[+] EMBL AU032033             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCTCTCAAGNTTAGGTATTCTGTTAACCTGTCTCCAAATTACAAGATAGAGGTCTCTTGGTCATAGCACGCCACGTAGGGTAACTGAAGTGNCCGATCAGCTGCCAGGGCAGAGTGNTTGTAGGTTGGGTGTTTTGTTGCAGTTTGGNTGATGCCCGTCATACCACGAAATGAAGTGCTTNTAGGTTTTCCTTTNTCCTTTATAAACAAGAGGCTCTTGTGAAAGNTAATCTGAGTGTCTTCTGTAGTGTACCATATTTGCATAATTGATAGTGTTCAGTTCAAGAAAAAA]


>consensus_12355#0 AGGAGAGGGAGCGGCGAATCGAAGCGANAAGCAGCAGCAGCAGCAACTCGCGCTGTTCAT TTATTCGCACCAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAGC CAAACCAACTGACGGACGCGAGCGAANGANGAAGTTCTTGAAGTTGAAGCAGCCGCCTCG CTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTT TTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTNGAGCGC CGCCGTCCATCCGTCCCCATGGATCCCCGCAGTCGCGCGGATCGCGGCGAGTAGGGAGGG AGGAGGGGAGGGGAGGGGGAAGCGGGTTCCGGGAGGAGAGGCGTCCTGCTCGAGCAAGGA GCTTGTGGGGGGAGGTAGATGGACGCGAACGCGGGCTCATTCGTCGCCGTCCGCCGGCTC GCCGGCTCCGAGCGCGCCGCGGGAGCGGCCGCCTTCCACCACTCGTCTTCGGCGGAGGTC GTGACGGGGTCGACGGCGTGGATCGGGAAGGGGCTGTCTTGCGTGTGCGCCCAGAGGAGG GACAGCGACGCGCGCCTCTCCTTCGATTTGACGCCAGTTCAGGAAGAGTGCCTACAGAGG TTACAGAACCGGTTAGAAGTTCAGTATGATAGTTCAAACAGTGATCATCAGGAAGCATTG AAGGACCTCTGGCGTGCTTCTTTTCCTGGAGCTGAGCTTCGGGGACTAATATCAGAACAA TGGAAAGAGATGGGCTGGCAAGGGAAAGATCCATCTACAGATTTTAGAGGTGGAGGCTTC ATCTCCTTGGAGAACTTAGTGTACTTCTCCAAGAACTTCCCAAAATCTTTTCAGGAACTT CTTCGGAAGCAGAATGGTGACCGTGCAATTTGGGAGTATCCATTTGCTGTGGCTGGTGTA AATATAACATTCATGCTCATCCAGATGCTTGATCTTCAATCAGTTAAACCAAGGTCGTTC ATCGGAGCAGTTTTTCTAAAGCTACTTTCTGAAAATGATCAGGCTTTTGACATTCTCTAC TGCATAACCTTCAAGTTGATGGATCAGCAATGGCTTGACATGCATGCCACTTACATGGAC TTCAATACGGTCATGAAGTCCACACGACGTCAGCTAGAAAGGGAGCTCTTGCTTGAAGAT ATTCAGCGGATTGAGGACATGCCATCATACAAGCTTTTGGCCCGCTAGCTAGTAACTGAA CCATAACATGGCTACGTGCTGCAAGGCTTGAGTTGCATAAGGGTTGCAACTAGTGCCCAC AAACAGTGTGAATTCCAAAACGCAGATGCACTTGTTTCCTCTCAAGTTTAGGTACTCTGT TAACCTGTCTCCAAATTACAAGATAGAGGTCTCTTGGTCATAGCACGCCACGTAGGGTAA CTGAAGTGTCCGATCAGCTGCCAGGGCAGAGTGTTTGTAGGTTGGGTGTTTTGTTGCAGT TTGGTTGATGCCCGTCATACCACGAAATGAAGTGCTTCTAGGTTTTCCTTTTTCCTTTAT AAACAAGAGGCTCTTGTGAAAGCTAATCTGAGTGTCTTCTGTAGTGTACCATATTTGCAT AATTGATAGTGTTCAGTTCAAAAAAAAA



consensusID : consensus_12355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence
                              [CNGGNCNTNGTNTCATTTATTCGCACTAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAGCCAAACCAACTGACGGACGCGAGCGAANGANGAAGTTCTTGAAGTTGAAGCAGCCGCCTCGCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTTTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTTGAGCGCCGCCGTTCAATCCGTTCCCATGGATNCCCGCAGTNGCGCGGATNGCGGCGAAGTAGGGAAGGAAGAAGGGAAGGGAAGGGGGAAACGGGTCCCGGAAGAAA]

[+] EMBL C74246               [CNGGNCNTNGTNTCATTTATTCGCACTAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAGCCAAACCAACTGACGGACGCGAGCGAANGANGAAGTTCTTGAAGTTGAAGCAGCCGCCTCGCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTTTTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTTGAGCGCCGCCGTTCAATCCGTTCCCATGGATNCCCGCAGTNGCGCGGATNGCGGCGAAGTAGGGAAGGAAGAAGGGAAGGGAAGGGGGAAACGGGTCCCGGAAGAAA]


>consensus_12355#1 CNGGNCNTNGTNTCATTTATTCGCACTAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCG CGGTGGCAGAGGCAGCCAAACCAACTGACGGACGCGAGCGAANGANGAAGTTCTTGAAGT TGAAGCAGCCGCCTCGCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATC TCTTTCTCTCTCTTTTTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTC GCCGTGGGTTGAGCGCCGCCGTTCAATCCGTTCCCATGGATNCCCGCAGTNGCGCGGATN GCGGCGAAGTAGGGAAGGAAGAAGGGAAGGGAAGGGGGAAACGGGTCCCGGAAGAAA



consensusID : consensus_12355#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence
                              [TGCTGCTGTTGCTGCTTCGCGCGCGCTCGTCGGTGCAGCGGAGGTCGTGACGGGGTCGACGGCGTGGATCGGGAAGGGGCTGTCTTGCGTGTGCGCCCAGAGGAGGGACAGCGACGCGCGCCTCTCCTTCGATTTGACGCCAGTTCAGGAAGAGTGCCTACAGAGGTTACAGAACCGGTTAGAAGTTCAGTATGATAGTTCAAACAGTGATCATCAGGAAGCATTGAAGGACCTCTGGCGTGCTTCTTTTCCTGGAGCTGAGCTTCGGGGGACTAATATCAAGAACAATGGAAAGAGATNGGGCTTGCAAGGGGAAGATCCATCTACAGATTTAAGGTATTTGCTTTTC]

[+] EMBL OSR32621A            [TGCTGCTGTTGCTGCTTCGCGCGCGCTCGTCGGTGCAGCGGAGGTCGTGACGGGGTCGACGGCGTGGATCGGGAAGGGGCTGTCTTGCGTGTGCGCCCAGAGGAGGGACAGCGACGCGCGCCTCTCCTTCGATTTGACGCCAGTTCAGGAAGAGTGCCTACAGAGGTTACAGAACCGGTTAGAAGTTCAGTATGATAGTTCAAACAGTGATCATCAGGAAGCATTGAAGGACCTCTGGCGTGCTTCTTTTCCTGGAGCTGAGCTTCGGGGGACTAATATCAAGAACAATGGAAAGAGATNGGGCTTGCAAGGGGAAGATCCATCTACAGATTTAAGGTATTTGCTTTTC]


>consensus_12355#2 TGCTGCTGTTGCTGCTTCGCGCGCGCTCGTCGGTGCAGCGGAGGTCGTGACGGGGTCGAC GGCGTGGATCGGGAAGGGGCTGTCTTGCGTGTGCGCCCAGAGGAGGGACAGCGACGCGCG CCTCTCCTTCGATTTGACGCCAGTTCAGGAAGAGTGCCTACAGAGGTTACAGAACCGGTT AGAAGTTCAGTATGATAGTTCAAACAGTGATCATCAGGAAGCATTGAAGGACCTCTGGCG TGCTTCTTTTCCTGGAGCTGAGCTTCGGGGGACTAATATCAAGAACAATGGAAAGAGATN GGGCTTGCAAGGGGAAGATCCATCTACAGATTTAAGGTATTTGCTTTTC



consensusID : consensus_12355#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 171
fasta sequence
                              [TCCACCAGCAGTCGCAGCAGGATCAGCGGCGAGTAGGGAGAAGGGAGGGAGGGGAACGGGTTCCGGGAGGAGAGGCAGTCCTGCTCGAGCAAGGAGCTTGTGGGGGGAGGTAGATGGACAGCGAACGCGGGCTCATTCGTCGCCGTCCGCCGGCTCGCCGGCTCCGAGCGC]

[+] EMBL BI809235             [TCCACCAGCAGTCGCAGCAGGATCAGCGGCGAGTAGGGAGAAGGGAGGGAGGGGAACGGGTTCCGGGAGGAGAGGCAGTCCTGCTCGAGCAAGGAGCTTGTGGGGGGAGGTAGATGGACAGCGAACGCGGGCTCATTCGTCGCCGTCCGCCGGCTCGCCGGCTCCGAGCGC]


>consensus_12355#3 TCCACCAGCAGTCGCAGCAGGATCAGCGGCGAGTAGGGAGAAGGGAGGGAGGGGAACGGG TTCCGGGAGGAGAGGCAGTCCTGCTCGAGCAAGGAGCTTGTGGGGGGAGGTAGATGGACA GCGAACGCGGGCTCATTCGTCGCCGTCCGCCGGCTCGCCGGCTCCGAGCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12355#1      ----------------------------------------CNGGNCNTNGTN----TCAT 16
consensus_12355#3      ------------------------------------TCCACCAGCAGTCGCA----GCAG 20
consensus_12355#0      AGGAGAGGGAGCGGCGAATCGAAGCGANAAGCAGCAGCAGCAGCAACTCGCGCTGTTCAT 60
consensus_12355#2      --------------------------------------TGCTGCTGTTGCTGCTTCGCGC 22
                                                               *      *         *  

consensus_12355#1      TTATTCG-CACTAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAG 75
consensus_12355#3      G-ATCAG-CGGCGAGTAGGGAGAAGGGAGGGAGGGGAACGGGTTCCGGGAGGAGAGGCAG 78
consensus_12355#0      TTATTCG-CACCAAACCGAAAGGCGAGACGAGGCGAGGCGAGGCGCGGTGGCAGAGGCAG 119
consensus_12355#2      GCGCTCGTCGGTGCAGCGGAGGTCGTGACGGGGTCGACGGCGTGGATCGGGAAGGGGCTG 82
                             * *        *   *  * ** *  *      * *        * ** *** *

consensus_12355#1      CCAAACCAACTGACGGACGCGAGCGAANGANGAAGTTCTTGAAGTTGAAGCAGCCGCCTC 135
consensus_12355#3      TC---CTGCTCGAGCAAGGAGCTTGTGGGGGGAGGTAGATGGACAGCGAAC-GCGGGCTC 134
consensus_12355#0      CCAAACCAACTGACGGACGCGAGCGAANGANGAAGTTCTTGAAGTTGAAGCAGCCGCCTC 179
consensus_12355#2      TC--------TTGCGTGTGCGCCC---AGAGGAGGGACAGCGACGCGCGCCTCTCCTTCG 131
                        *                * *       *  ** *       *       *         

consensus_12355#1      GCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTT 195
consensus_12355#3      ATTCGTCGCCGTCCGCCGGCTCGCCGGCTCCGAGCGC----------------------- 171
consensus_12355#0      GCTCGCCTCGCGGCCCTCGCTTGCCTAATCAGGAGGGGGGCTATCTCTTTCTCTCTCTTT 239
consensus_12355#2      ATTTGACGCCAGTTCAGGAAGAGTGCCTACAGAGGTTACAGAACCGGTTAGAAGTTCAGT 191
                         * * * *             *      * *                            

consensus_12355#1      TTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTTGAGCG 255
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TTTCCTTTCCTTTCCTGCGTCCTTGGGATCCGCCCGTGCGATCTCGCCGTGGGTNGAGCG 299
consensus_12355#2      ATGATAGTTCAAACAGTGATCATCAGGAAGCATTGAAGGACCTCTGGCGTGCTTCTTTTC 251
                                                                                   

consensus_12355#1      CCGCCGTTCAATCCGTTCCCATGGATNCCCGCAGTNGCGCGGATNGCGGCGAAGTAGGGA 315
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      CCGCCGTCCA-TCCGTCCCCATGGATCCCCGCAGTCGCGCGGATCGCGGCGA-GTAGGGA 357
consensus_12355#2      CTGGAGCTGAGCTTCGGGGGACTAATATCAAGAACAATGGAAAGAGATNGGGCTTGCAAG 311
                                                                                   

consensus_12355#1      AGGAAGAAGGGAAGGGAAGGGGGAAACGGGTCCCGGAAGAAA------------------ 357
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      GGGAGGAGGGGAGGGGAGGGGGAAGCGGGTTCCGGGAGGAGAGGCGTCCTGCTCGAGCAA 417
consensus_12355#2      GGGAAGATCCATCTACAGATTTAAGGTATTTGCTTTTC---------------------- 349
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      GGAGCTTGTGGGGGGAGGTAGATGGACGCGAACGCGGGCTCATTCGTCGCCGTCCGCCGG 477
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      CTCGCCGGCTCCGAGCGCGCCGCGGGAGCGGCCGCCTTCCACCACTCGTCTTCGGCGGAG 537
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      GTCGTGACGGGGTCGACGGCGTGGATCGGGAAGGGGCTGTCTTGCGTGTGCGCCCAGAGG 597
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      AGGGACAGCGACGCGCGCCTCTCCTTCGATTTGACGCCAGTTCAGGAAGAGTGCCTACAG 657
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      AGGTTACAGAACCGGTTAGAAGTTCAGTATGATAGTTCAAACAGTGATCATCAGGAAGCA 717
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TTGAAGGACCTCTGGCGTGCTTCTTTTCCTGGAGCTGAGCTTCGGGGACTAATATCAGAA 777
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      CAATGGAAAGAGATGGGCTGGCAAGGGAAAGATCCATCTACAGATTTTAGAGGTGGAGGC 837
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TTCATCTCCTTGGAGAACTTAGTGTACTTCTCCAAGAACTTCCCAAAATCTTTTCAGGAA 897
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      CTTCTTCGGAAGCAGAATGGTGACCGTGCAATTTGGGAGTATCCATTTGCTGTGGCTGGT 957
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      GTAAATATAACATTCATGCTCATCCAGATGCTTGATCTTCAATCAGTTAAACCAAGGTCG 1017
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TTCATCGGAGCAGTTTTTCTAAAGCTACTTTCTGAAAATGATCAGGCTTTTGACATTCTC 1077
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TACTGCATAACCTTCAAGTTGATGGATCAGCAATGGCTTGACATGCATGCCACTTACATG 1137
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      GACTTCAATACGGTCATGAAGTCCACACGACGTCAGCTAGAAAGGGAGCTCTTGCTTGAA 1197
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      GATATTCAGCGGATTGAGGACATGCCATCATACAAGCTTTTGGCCCGCTAGCTAGTAACT 1257
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      GAACCATAACATGGCTACGTGCTGCAAGGCTTGAGTTGCATAAGGGTTGCAACTAGTGCC 1317
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      CACAAACAGTGTGAATTCCAAAACGCAGATGCACTTGTTTCCTCTCAAGTTTAGGTACTC 1377
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TGTTAACCTGTCTCCAAATTACAAGATAGAGGTCTCTTGGTCATAGCACGCCACGTAGGG 1437
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TAACTGAAGTGTCCGATCAGCTGCCAGGGCAGAGTGTTTGTAGGTTGGGTGTTTTGTTGC 1497
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      AGTTTGGTTGATGCCCGTCATACCACGAAATGAAGTGCTTCTAGGTTTTCCTTTTTCCTT 1557
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      ------------------------------------------------------------
consensus_12355#3      ------------------------------------------------------------
consensus_12355#0      TATAAACAAGAGGCTCTTGTGAAAGCTAATCTGAGTGTCTTCTGTAGTGTACCATATTTG 1617
consensus_12355#2      ------------------------------------------------------------
                                                                                   

consensus_12355#1      -------------------------------
consensus_12355#3      -------------------------------
consensus_12355#0      CATAATTGATAGTGTTCAGTTCAAAAAAAAA 1648
consensus_12355#2      -------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)