These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1000 fasta sequence [GCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT-CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT-CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT-CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG-CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA-TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTG-CCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGATTTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAACACAGCAAGATCAGCCTGACAAATAAGGGTTATGTGGGACGAAAGGAAA] [+] EMBL AU057286 [GCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGA GGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGG ] [+] EMBL AK073181 [ TCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGTGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGTAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTG CCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGATTTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAACACAGCAA ] [+] EMBL CB631607 [ TGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGTGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCAGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAATGAAATGTTGTGAAATGGACGATGTTCCTTTG CCCCATGGGCTATGTAAATATTTCAAGA ] [-] EMBL CB631608 [ GCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGTGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCAGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAATGAAATGTTGTGAAATGGACGATGTTCCTATG CCCCATGGGCTATGTAAATATTTCAAGACTT ] [-] EMBL AU057076 [ CGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTNTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCTCCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGTCCGGA CTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTC ] [+] EMBL CA755350 [ CATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCNAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGNCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCNAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCGCCCGAGGCCGG AGGGATGCCCGGGCAAGCTCTGTTATTTTGCTTA GAGATTTGCCCGCG ] [+] EMBL CB647267 [ TGCGTTCCTTATTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCT CCCGGAGGGAAGGGATGATCATGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGT CGGAGCTGTCGCTCTCGTCGTCATCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCCACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGAGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCCGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGC ] [-] EMBL CB650774 [ GGTGGTCATCGTGGGCGGCGGGCCAGTTCGAGATGTCCTCGGTCATGACGGAGCTCCCGCTCAAGAGGGGGCTCTCCAAGTTGCTTCGTCGGCAAGTCGCAGTGGCTCGCGTAGCTGGCGCCGGTGGGCGGCCTGCAGGACATGGCGAAGCGGATGAGGAAGCGCCTCAAGACGTCGCGCAGTTGCGGCGTCGGGCTCGGGGTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTGAGGGCATGGGCTATGT ] [-] EMBL CB647268 [ AGCTCCCGCTCAAGAGGGGGCTCTCCAAGTT CTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCGCCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATCTCG CCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTA TTTGCTTAGGAGATTTGCCCGCGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGAAATGGACGATGTTCCTTTG CCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGATTTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAACACAGCAAGATCAGCCTGACAAATAAGGGTTATGTGGGACGAAAGGAAA] consensusID : consensus_12362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [GAGTAGCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCTCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGTGCGTGTGCCTGCACCCACCCTCCCCCTTTCATCTGGATCTTGCTGCTGCTGCTCGAGAGGTTTCAACTTTTGGGCTTTGGTGATCTGATCGGCGTGCGTGCTTGCTCCGTTTGTGTTGCAGGAGGGGGCTCTCCCAGTTCTTCGACGGCNAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCG] [+] EMBL CA754013 [GAGTAGCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCTCCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATCGTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTCTCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCTGAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGCTCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAGCTCCCGCTCAAGTGCGTGTGCCTGCACCCACCCTCCCCCTTTCATCTGGATCTTGCTGCTGCTGCTCGAGAGGTTTCAACTTTTGGGCTTTGGTGATCTGATCGGCGTGCGTGCTTGCTCCGTTTGTGTTGCAGGAGGGGGCTCTCCCAGTTCTTCGACGGCNAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGGGCGGCCGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACGTCGCGCAGCTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12362#0 -----GCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCT 55 consensus_12362#1 GAGTAGCCCTCGTCGTCATTCTTATCCTCCTACTTCCGTTACCTTTATAGTTCGCGTCCT 60 ******************************************************* consensus_12362#0 CCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATC 115 consensus_12362#1 CCACCTCCTCTTCCCATCTCGCCTCACGCCATTTTTCATTGCTGCGTATCGTCGATCATC 120 ************************************************************ consensus_12362#0 GTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTC 175 consensus_12362#1 GTTGGTCCGTGCGTTCGTTAGTGTCATCCGTGTGCGGGAATGGAAGCGTACATGTTGTTC 180 ************************************************************ consensus_12362#0 TCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCT 235 consensus_12362#1 TCCCGGAGGGAAGGGATGATCAGGTGCGACGAGCAGGAGGAGGACATCGGGTGCCCGTCT 240 ************************************************************ consensus_12362#0 GAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGC 295 consensus_12362#1 GAGTCGGAGCTGTCGCTCTCGTCGTCGTCGGAGGGGATGGAGCTCGCCGACGACGCGAGC 300 ************************************************************ consensus_12362#0 TCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAG 355 consensus_12362#1 TCGTCGGGGTCGTCATCGTCGGCGGCGGGCCACTTCGAGATGTCCTCGCTCATGACGGAG 360 ************************************************************ consensus_12362#0 CTCCCGCTCAAGAGGGGGCTCTCCAAGTTCTTCGACGGCAAGTCGCAGTCGTTCGCGTCG 415 consensus_12362#1 CTCCCGCTCAAGTGCGTG-TGCCTGCACCCACCCTCCCCCTTTCATC-TGGATCTTGCTG 418 ************ * * * * * * * * * ** * * ** * * consensus_12362#0 CTGGCGGCGGTGGGCGGCCTGGAGGACATGGCGAAGCCGATGAGGAAGCGCCTCAAGACG 475 consensus_12362#1 CTGCTGCT--CGAGAGGTTTCAACTTTTGGGCTTTGGTGATCTGA-------TC--GGCG 467 *** * * * ** * * *** * *** * ** * ** consensus_12362#0 TCGCGCAGCTGCGGCGTCGGGCTCGGGCTGCAGGACGCGCACCGCCGTGGCCGCCTCTCG 535 consensus_12362#1 T-GCGTGCTTGCTCCGTTTGTGTTGCAGGAGGGGGCTCTCCCAGTTCTT-CGACGGCNAG 525 * *** *** *** * * * ** * * * * * * * * * * consensus_12362#0 CCGCGGCCGCTCTGCGGCAATGCCAGCGCCGCGTCCTTCAAGAAGGTGTCCAAG--GGAG 593 consensus_12362#1 TCGCAGTCGTTC-GCGTCGCTGGCGGCGGTGGGCGGCCGGAGGACATGGCGAAGCCGATG 584 *** * ** ** *** * ** * *** * * ** * ** * *** * * consensus_12362#0 GACAGCTGTCCGTGCTCGGCGCG-AGCAGGAGGACGCGTTCGCCGGCGACGGCGGCGATC 652 consensus_12362#1 AGGAAGCGCCTCAAGACGTCGCGCAGCTGCG----------------------------- 615 * * * ** **** *** * consensus_12362#0 TCGCCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTATTTGCTTAGGAGATTTGCCCG 712 consensus_12362#1 ------------------------------------------------------------ consensus_12362#0 CGAGGTTCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGT 772 consensus_12362#1 ------------------------------------------------------------ consensus_12362#0 AGTAGGTGACACGGTTGTAATTACAGTTTTGAAGTGAAAATGACCAAGGAAATGTTGTGA 832 consensus_12362#1 ------------------------------------------------------------ consensus_12362#0 AATGGACGATGTTCCTTTGCCCCATGGGCTATGTAAATATTTCAAGACTTTTAGAGAGAT 892 consensus_12362#1 ------------------------------------------------------------ consensus_12362#0 TTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGAAAAAATAAC 952 consensus_12362#1 ------------------------------------------------------------ consensus_12362#0 ACAGCAAGATCAGCCTGACAAATAAGGGTTATGTGGGACGAAAGGAAA 1000 consensus_12362#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||