These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 882 fasta sequence [AATCCAAGACGAAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC-GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG-CGGCCATCGGCGAGGCTC-TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT-GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA-GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA-CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTA-TTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGAGCAACCTGTATGTATAATTTTGTTCTTGTGGAGTAAAGGGAGAGTAGATTTGTAAAAAAAAAAAAAAAAAATTAAAAG] [+] EMBL AK070249 [AATCCAAGACGAAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTA TTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAA ] [+] EMBL CB643780 [ AAGACCATGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGGGTTGCTGATACTGTTAGGAACGATGTCATCAAATCATACCGT ] [+] EMBL CB685715 [ AAGCCTTAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGCCGGTGTCGGCGGCGGCTTCCACACGCTGGTGCTGTTCATCGTGCTCGGAACGAT ] [+] EMBL AU070384 [ AGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGCGGGCCGTGCTCCCGGCGCCGAAGCCGACGAAGC G CGGCCATCGGCGAGGCTCTTCGTGCA GGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGANGGTCGGCGGGCA AGCGTTNCGGTCTGCGCCAAGGTCCGCGCCACGGCCGTC ] [+] EMBL AU057048 [ AGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGNGCCGAAGCCGACGAGGCGGNCGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGNGCTCTCGCCTGTCGACGATGGCCATGGNGGCCAAGTCCGGCGGGAGG ] [+] EMBL CA754137 [ AATCGAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGC GGCCGTGCTCCCGGCGCCGAAGCCGACGAGGCGG CGGCCATCGGCGAGGCTC TCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTCTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTCGAGGA CGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGGCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACAACNATGATTACTGAATTAATTACTGTGTTGCTGATACTGGTAGGGACGATGTCATCAG ] [-] EMBL CB643781 [ CAATGAGGCGCCGTCGACGCGGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGCTCGCGCTTTCGCCTGTCGACGAT GCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGCA GGCGTTCCGGTTTGCGCCACGGTCCGCGCCACGGCCGTTTGGTCCACGGATAAACAATTCGAGGA GGAACATTTACATCAACCCCCCGGTGGCGCCGCCTTTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTTTCGTTTTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTTGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTTTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTA TTTTTTTTCATGTCAATTTTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGAGCAACCTGTATGTATAATTTTGTTCTTGTGGAGTAAAGGGAGAGTAGATTTGTAAAAAAAAAAAAAAAAAATTAAAAG] [-] EMBL CB685716 [ GCCAAGTCCGGCGGGAGGGTCGGCTGGCAGGGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATTGGAGGAGCGAGCATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAAGGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATCCCGTGTGTAATGTGATATAGCGAGGCTA TTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGA ] [+] EMBL AU057049 [ TCGGNACGATCGTTGGCGCTNTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTAATGTGATATAGCGAGGCTATTTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATTGGTGCATGAGGANCAACCTGTATGTATAATTTTGTTCTTGTGGAGTAAAACGAGAGTAGATTTGTAAAAAA ] consensusID : consensus_12366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGNGGGCAGCACGGCGGCCGTGCTCCCGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACAATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGACCGATGTCATCAGATCATANCCGTGTGTAAATGTGATATAGCGAGGGCTAATTTTTTTTCAATGTCAATTCTAAGGG] [+] EMBL OSC8851 [GAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTGTGCAGTGNGGGCAGCACGGCGGCCGTGCTCCCGGCGCCGCCTCTGGTCGGCGGTTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACAATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGACCGATGTCATCAGATCATANCCGTGTGTAAATGTGATATAGCGAGGGCTAATTTTTTTTCAATGTCAATTCTAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12366#0 AATCCAAGACGAAGCTGAGAGAAAGAAGACGAATCGAGAGCAAAAGCTCAATCTAAGCTC 60 consensus_12366#1 ------------------------------------------------------------ consensus_12366#0 GCAAGAAAGCTCGAGTAGCAGCCATGGCTTTAGCACCCACGTCTCTCCGGTGCTTCCTCA 120 consensus_12366#1 ------------------------------------------------------------ consensus_12366#0 CCGGAAGGCCACTGTGCAGTGCGGGCAGCACGGCGGCCGTGCTCCCGGCGCCGAAGCCGA 180 consensus_12366#1 ------------------------------------------------------------ consensus_12366#0 CGAGGCGGCGGCCATCGGCGAGGCTCTCGTGCAGGGCGGCCAATGAGGCGCCGTCGACGC 240 consensus_12366#1 ------------------------------------------------------------ consensus_12366#0 GGGGTGATCTTCCGGTGAAGCTTGGCAAGCTGGCGATGGTCGCGCTGGCCGCCGGCGTGC 300 consensus_12366#1 ------------------------------------------------------------ consensus_12366#0 TCGCGCTCTCGCCTGTCGACGATGCCATGGCGGCCAAGTCCGGCGGGAGGGTCGGCGGGC 360 consensus_12366#1 -----------------GAGAGCAAAAGCTCAATCTAAGCTCGCAAGAAAGCT--CGAGT 41 ** * * * * * ** ** * ** * consensus_12366#0 AGGCGTTCCGGTCTGCGCCACGGTCCGCGCCACGGCCGTCTGGTCCACGGATAAACAATT 420 consensus_12366#1 AGCAGCCATGGCTTTAGCACCCA--CGTCTCTCCGGTGCTTCCTCACCGGAAGGCCACTG 99 ** * ** * ** * ** * * * * * ** **** ** * consensus_12366#0 CG-AGGACGAACATCTACATCAACC-CACCGGTGGCGCCGCCTCTGGTCGGCGGTTACGG 478 consensus_12366#1 TGCAGTGNGGGCAGC-ACGGCGGCCGTGCTCCCGGCGCCGCCTCTGGTCGGCGGTTACGG 158 * ** * ** * ** * ** * *************************** consensus_12366#0 CTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGC 538 consensus_12366#1 CTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGC 218 ************************************************************ consensus_12366#0 CGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGT 598 consensus_12366#1 CGTCGGTGTCGGCGGCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGT 278 ************************************************************ consensus_12366#0 TGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACGATGATTACTGAATTAA 658 consensus_12366#1 TGGCGCTGTCAGGCGGTTTCTCAACAGGAACGACGACGACTACAATGATTACTGAATTAA 338 ******************************************* **************** consensus_12366#0 TTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACC-GTGTGTAA-TGT 716 consensus_12366#1 TTACTGTGTTGCTGATACTGTTAGGACCGATGTCATCAGATCATANCCGTGTGTAAATGT 398 ************************** ****************** * ******** *** consensus_12366#0 GATATAGCGAGGCT--ATTTTTTTTCA-TGTCAATTCTAAGGGAACAGATCGGTAAGCTA 773 consensus_12366#1 GATATAGCGAGGGCTAATTTTTTTTCAATGTCAATTCTAAGGG----------------- 441 ************ *********** *************** consensus_12366#0 GAAGTGAAATACATTAATTGGTGCATGAGGAGCAACCTGTATGTATAATTTTGTTCTTGT 833 consensus_12366#1 ------------------------------------------------------------ consensus_12366#0 GGAGTAAAGGGAGAGTAGATTTGTAAAAAAAAAAAAAAAAAATTAAAAG 882 consensus_12366#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||