These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1350 fasta sequence [GCATAGCCCTCCACAGTGCACACAGAGTATATCAGTAACCAATTAATCAACCTAGCTTAATTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTGGCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTCGACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACCATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTGCCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTGCCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCGCCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTG-CCCGCCGTGCCGGGAGTCCCGCTGCCGGAGGTG-CCCGGC-GTCCCTCTGCCGCCGGTGC-CGTCCGTCGTCCCGCCC-GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC-GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC-GCCA-TGCATTGGCC-GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA-GAGAGAGTACAAATTAAGATGACTTGCATGTA-CGTTGTTACGT-CAAGTTGGTATAGTATTTGTGTAATGAACGT-GTGTGTGTGCAGACCA-GGTGCAGTATGT-GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA-TTATACGTGTCATGTTAACAAATATAAAAATCTATCACCGTTTTAATTGTGTATAAAAATGTTGGCAAATTACCACGCATGCATCTTAGTAAAAGTGCCCCTTAAAAAAAAAA] [+] EMBL AK069119 [GCATAGCCCTCCACAGTGCACACAGAGTATATCAGTAACCAATTAATCAACCTAGCTTAATTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTGGCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTCGACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACCATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTGCCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTGCCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCGCCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTG CCCGCCGTGCCGGGAGTCCCGCTGCCGGAGGTG CCCGGC GTCCCTCTGCCGCCGGTGC CGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTACAAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGT ] [+] EMBL CB682514 [ atGCTCAATTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTGGCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTCGACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACCATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGCGTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTGCCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTGCCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCGCCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTG CCCGCCGTGCCGGGAGTCCCTCTGCCGGAAGTG CCCGGC TTC ] [+] EMBL BM038200 [ tccGGGTTTCTT GACCCT CCGGT CC CC TTG CCCCCCGT CC GGAGTCCCCTTGCCGGA GTGCCCCGGC GTCCCTCT CCGCCGGT C CGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTAC AATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGAC AATGCGTCACGCTCTGTATACGTACGTGTGC AAAGCTTAACGTGTTGCTTAAANCTATACGTGTCATGTTAAC AATATAAAAAa ] [+] EMBL BM418922 [ GACCCTGCCGGTGCC CCGTTGTCCCCCCGTGCCGGGAGTCCCGCT CCGGAGGTG CCCGGCTGTCCCTCTGCCGCCGGTGC CGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCCGCTGACGTGTACGTGGCCTTGACCGTGTGC GCCANTGCCTTGGCCNNCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCNCCATATAAATCCTTCTAGCCTTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTNCCTTGTAAACCC GAGAGAGTCCCAATTAACCTGACTTGCATGTACCGTTGTTACGTCCCAGTTGGTATAGTATTTGTGTAAa ] [+] EMBL BQ906534 [ GGAGTCCCGCTGCCGGAGGTG CCCGGC GTCCCTCTGCCGCCGGTGCACGTCCGTCGTCCCGCCC GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCCAGGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTACAAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATAAAAAAA ] [+] EMBL BI808357 [ GTCCCGCCCGGTGCCTTAGGTCAACTCC GCGAGCCCCGTGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGC GCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACCTTGTAAAACACGAGAGAGTACCAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGAC AATGCGTCACGCTCTGTATACGTACGTGTGC AAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATATATATTTCTATCACCGTTTTAATTGTGTATAAAAA ] [+] EMBL BI809172 [ TGCCGTCGTTAATTAATTACTCC GGCCAGCTGACGTGTACGTGGCATTGACCGTGTGCGGCCA TGCATTGGCC GCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTAC AATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGAC AATGCGTCACGCTCTGTATACGTACGTGTGC AAAGCTTAACGTGTTGCTTAAA TTAaaaaaaaaa ] [+] EMBL CB681721 [ ACTTCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGTGGGAAATGCTAAAATGACTTACATTGTAAAACA GAGAGAGTACAAATTAAGATGACTTGCATGTA CGTTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGT GTGTGTGTGCAGACCA GGTGCAGTATGT GTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATATA ] [+] EMBL BI809612 [ TTGTTACGT CAAGTTGGTATAGTATTTGTGTAATGAACGTGGTGTGTGTGCAGACCACGGTGCAGTATGTGGTTTGTGGCGAGTGGCGACCAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAA TTATACGTGTCATGTTAACAAATATATATTTCTATCACCGTTTTAATTGTGTATATCTTTGTTGGCAAATTACCACGCATGCATCTTAGTAAAAGTGCCCCTTAAAAAAAAAA] consensusID : consensus_12367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [TTCCCTCCGTGTTCACNATATAATCATTTCTAGCATTGTTTCATNATGTCATATTGATGTTAAAGAATTCTAGATAAATAATAATATGTGGGGAAATGCTATAAATGACTTACNTTGTGNAAACCAGAGAGAGTACACAATTAAGATGTACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTAATGAACGTGTGTGTGTCCAGACCAGGTCCCGTACTGTGTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGGTGTGTGCTTAAATTAAACGGTGTCATGTTAAAAAAAAAA] [+] EMBL BM421153 [TTCCCTCCGTGTTCACNATATAATCATTTCTAGCATTGTTTCATNATGTCATATTGATGTTAAAGAATTCTAGATAAATAATAATATGTGGGGAAATGCTATAAATGACTTACNTTGTGNAAACCAGAGAGAGTACACAATTAAGATGTACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTAATGAACGTGTGTGTGTCCAGACCAGGTCCCGTACTGTGTTTGTGGCGAGTGGCGACAAATGCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGGTGTGTGCTTAAATTAAACGGTGTCATGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12367#0 GCATAGCCCTCCACAGTGCACACAGAGTATATCAGTAACCAATTAATCAACCTAGCTTAA 60 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 TTACATAGACGAGCTAGCTTAGCACACATGGCGTCTTCAACCTCGAGCTCGCTCGCCGTG 120 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 GCAACAATGGTGGCCGTCGTCCTCCTCCTGGGTGCCACCACCCAGGCGGCGCGCCTCCTC 180 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 GACGAACTCGTCCCCGGCATTCCGATGCCGACGATCCCCGGTGTACCGGCGGTCGGCCCC 240 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 ACCATCCCGGCCATCCCGACGATCCCCGGCGTTCCGGCGGTCGGCCCCACCATCCCGACC 300 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 ATCCCCACCGTTCCGACGATCCCCGGAGTTCCGGCGGTCGGTCCCACCATCCCGGCCATC 360 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 CCGACGATCCCCGGCGTGCCGGCGGTCGGCCCCACCATCCCGACCATCCCGACCATCCCG 420 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 ACGATCCCCGGCGTGCCGGCGGTCGGTTCCACCATTCCGACCATCCCGACGATCCCCGGC 480 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 GTGCCGGCGGTCGGCCCGACTATCCCGACCATCCCCGGCGTGCCGACGATCCCGACGGTG 540 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 CCGGGAGTGCCGGAGCTGCCGGTAAATCCCGGAGGCGTGGTGCCGACGATCCCGAAGGTG 600 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 CCATTGCCGCCGGTGAATCCCGGAGCCGTCGTGCCCGCCGTGCCAGCTCTGCCGGTGCCG 660 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 CCGATCCCCGGAGCCGCGGGGGGTGTCGTGCCGACCCTGCCGGTGCCGCCGTTGCCCGCC 720 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 GTGCCGGGAGTCCCGCTGCCGGAGGTGCCCGGCGTCCCTCTGCCGCCGGTGCCGTCCGTC 780 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 GTCCCGCCCGTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTC 840 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 CGGCCAGCTGACGTGTACGTGGCATTGACCGTGTGCGCCATGCATTGGCCGCCGGCGCCG 900 consensus_12367#1 ------------------------------------------------------------ consensus_12367#0 GCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACTTCCTCCGT-TTC 959 consensus_12367#1 ----------------------------------------------TTCCCTCCGTGTTC 14 * ******* *** consensus_12367#0 ACAATATAAATCATTCTAGCATT-TTTCATATT--CATATTGATGTTAAAGAAT-CTAGA 1015 consensus_12367#1 ACNATATAATCATTTCTAGCATTGTTTCATNATGTCATATTGATGTTAAAGAATTCTAGA 74 ** ****** ********** ****** * ******************* ***** consensus_12367#0 TAAATAT--ATATGTGGG-AAATGCTA-AAATGACTTACATTGTAAAA--CAGAGAGAGT 1069 consensus_12367#1 TAAATAATAATATGTGGGGAAATGCTATAAATGACTTACNTTGTGNAAACCAGAGAGAGT 134 ****** ********* ******** *********** **** ** ********** consensus_12367#0 ACA-AATTAAGATG-ACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTA 1127 consensus_12367#1 ACACAATTAAGATGTACTTGCATGTACGTTGTTACGTCAAGTTGGTATAGTATTTGTGTA 194 *** ********** ********************************************* consensus_12367#0 ATGAACGTGTGTGTGTGCAGACCAGGTGCAGTA-TGTGTTTGTGGCGAGTGGCGACAAAT 1186 consensus_12367#1 ATGAACGTGTGTGTGTCCAGACCAGGTCCCGTACTGTGTTTGTGGCGAGTGGCGACAAAT 254 **************** ********** * *** ************************** consensus_12367#0 GCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACG-TGT-TGCTTAAATTATACG 1244 consensus_12367#1 GCGTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGGTGTGTGCTTAAATTAAACG 314 **************************************** *** *********** *** consensus_12367#0 -TGTCATGTTAACAAATATAAAAATCTATCACCGTTTTAATTGTGTATAAAAATGTTGGC 1303 consensus_12367#1 GTGTCATGTTAAAAAAAAAA---------------------------------------- 334 *********** *** * * consensus_12367#0 AAATTACCACGCATGCATCTTAGTAAAAGTGCCCCTTAAAAAAAAAA 1350 consensus_12367#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||