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Oryza sativa
cluster # 12370 cluster # 12370       Sequences # 10       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12370#0 length = 1278 sequences # 4  
consensus_12370#1 length = 734 sequences # 4  
consensus_12370#2 length = 693 sequences # 1  
consensus_12370#3 length = 304 sequences # 1  

consensusID : consensus_12370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1278
fasta sequence
                              [GACACTCGACTGGACTGAAGGAGTAGAAAGAGACGCGCCAAGAGTACGCAGAGGCTGAGCTGAGCCAGGACGACGTACGACGACGACGACTATGGCGGCGGCGGCGTTGCTGTTGGCGCCAGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGGAGGGTTCGGTGCGCGGCGACTGCTCCGGCGCCGATGGGGGATAAGACGGAGTACCGGGACGGGCCGGTGGATCGCGCCTTCATGGGGCTGTTCGCGCGCAAGATGGAGAAGTACGCCGTCGTCTCCAGCTCCGGCGGGAAGGGGAAGGAGAAGAAGAAGGAGAAGAGCTCGAGGTCGGTGTGGGAGTGGGACTACGAGAGCTTCGTGGACGTGTCGCGGCGGGTGATGGTGGGGCGGACGCGGGCGCAGCAGCAGGAGGCCGTCCGCGAGGTGCTCCTCTCCATGCTCCCCTCCGGCGCCCCCGAGCAGTTCAAGAAGCTCTTCCCGCCGACGAGGTGGGCCTGCGAGTTCAACGCTGCCCTCACCGTCCCCTTCTTCCACTGGCTCGTCGGCCCATCAGAGGTTGTGGAGGTTGAGGTCAATGGGGTGAAGCAGAAGAGTGGAGTGCTGGTAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAATTCCGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTCACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTA-CCTGTAATTAAAGATCCATCATGGTA-TTAATATAGTACAAATGCAATACTTCAAATATTAAAAAAAAAAAAAAAAAA]

[+] EMBL CF295308             [GACACTCGACTGGACTGAAGGAGTAGAAAGAGACGCGCCAAGAGTACGCAGAGGCTGAGCTGAGCCAGGACGACGTACGACGACGACGACTATGGCGGCGGCGGCGTTGCTGTTGGCGCCAGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGGAGGGTTCGGTGCGCGGCGACTGCTCCGGCGCCGATGGGGGATAAGACGGAGTACCGGGACGGGCCGGTGGATCGCGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK099560             [                                                         AGCTGAGCCAGGACGACGTACGACGACGACGACTATGGCGGCGGCGGCGTTGCTGTTGGCGCCAGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGGAGGGTTCGGTGCGCGGCGACTGCGCCGGCGCCGATGGGGGAGAAGACGGAGTACCGGGACGGGCCGGTGGAGCGCGCCTTCATGGGGCTGTTCGCGCGCAAGATGGAGAAGTACGCCGTCGTCTCCAGCTCCGGCGGGAAGGGGAAGGAGAAGAAGAAGGAGAAGAGCTCGAGGTCGGTGTGGGAGTGGGACTACGAGAGCTTCGTGGACGTGTCGCGGCGGGTGATGGTGGGGCGGACGCGGGCGCAGCAGCAGGAGGCCGTCCGCGAGGTGCTCCTCTCCATGCTCCCCTCCGGCGCCCCCGAGCAGTTCAAGAAGCTCTTCCCGCCGACGAGGTGGGCCTGCGAGTTCAACGCTGCCCTCACCGTCCCCTTCTTCCACTGGCTCGTCGGCCCATCAGAGGTTGTGGAGGTTGAGGTCAATGGGGTGAAGCAGAAGAGTGGAGTGCTGGTAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAATTCCGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTCACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGTTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTA CCTGTAATTAAAGATCCATCATGGTA TTAATATAGTACAAAT                                   ]
[+] EMBL CA766156             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGAGTGGAGTGCTGATAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAATTCCGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTCACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTACCCCGTAATTAAAGATCCATCATGGTATTTAATATAGTACAAATGCAATACTTCAAA                      ]
[+] EMBL AU076259             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccaAACGAGTTCGGACTCCCTCTCACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAG TACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTA CCTGTAATTAAAGATCCATCATGGTA TTAATATAGTACAAATGCAATACTTCAAATATTAAAAAAAAAAAAAAAAAA]


>consensus_12370#0 GACACTCGACTGGACTGAAGGAGTAGAAAGAGACGCGCCAAGAGTACGCAGAGGCTGAGC TGAGCCAGGACGACGTACGACGACGACGACTATGGCGGCGGCGGCGTTGCTGTTGGCGCC AGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGGAGGGTTCGGTGCGCGGCGAC TGCTCCGGCGCCGATGGGGGATAAGACGGAGTACCGGGACGGGCCGGTGGATCGCGCCTT CATGGGGCTGTTCGCGCGCAAGATGGAGAAGTACGCCGTCGTCTCCAGCTCCGGCGGGAA GGGGAAGGAGAAGAAGAAGGAGAAGAGCTCGAGGTCGGTGTGGGAGTGGGACTACGAGAG CTTCGTGGACGTGTCGCGGCGGGTGATGGTGGGGCGGACGCGGGCGCAGCAGCAGGAGGC CGTCCGCGAGGTGCTCCTCTCCATGCTCCCCTCCGGCGCCCCCGAGCAGTTCAAGAAGCT CTTCCCGCCGACGAGGTGGGCCTGCGAGTTCAACGCTGCCCTCACCGTCCCCTTCTTCCA CTGGCTCGTCGGCCCATCAGAGGTTGTGGAGGTTGAGGTCAATGGGGTGAAGCAGAAGAG TGGAGTGCTGGTAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGT CAACATGTGCAAAATTCCGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTCAC CATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCACC CTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAAC ACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAAT TCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCAT AGTAGCTACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA TAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCT TTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCC CTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACT ACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAATGCAATACTTCAAATATT AAAAAAAAAAAAAAAAAA



consensusID : consensus_12370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 734
fasta sequence
                              [GAAGAGTGGAGTGCTGATAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAATTCTGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTCACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTCGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAATGCAATACTTCAAATATTCATGNAATTGGTCTTGCTTCGATTTCGATGGNAACCGGTNAACCAAACTGCAGNGCATGGTNCATCAA]

[+] EMBL CB096367             [GAAGAGTGGAGTGCTGATAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGCGTCGGAATGTGCGTCAACATGTGCAAAATTCTGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTCACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTCGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAATGCAATACTTCAAATATTCATGNAATTGGTCTTGCTTCGATTTCGATGGNAACCGGTNAACCAAACTGCAGNGCATGGTNCATCAA]
[+] EMBL BI811517             [                                                                                                                                                                                                                                                                                                                                                                                                CAGTTCATAC TTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAAT CAGTGCTTGTATACAGAAATTCTTGTGCCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAAa                                                                                     ]
[-] EMBL CF295309             [                                                                                                                                                                                                                                                                                                                                                                                                   TTCATACGTTGTACCACTCTTTACCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGATAAATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAATGCAATAATTCAAATATTCATGTAAaa                                                           ]
[+] EMBL AA754210             [                                                                                                                                                                                                                                                                                                                                                                                                                                   cgagAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCTTTG CTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTGCCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAMATGCAATACTTC                                                                           ]


>consensus_12370#1 GAAGAGTGGAGTGCTGATAAAGAAATGCAGGTACCTGGAGAACAGCGGCTGCGTCGGAAT GTGCGTCAACATGTGCAAAATTCTGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCC TCTCACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCC CCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCAT CTCAACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATG CTGAATTCAGATGTCGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATA GCCCATAGTAGCTACGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTA TATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTAAGGCT TTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATAGTTTCCGCAA TAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGAAATTCTTGTG CCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAATGCAATACTTCA AATATTCATGNAATTGGTCTTGCTTCGATTTCGATGGNAACCGGTNAACCAAACTGCAGN GCATGGTNCATCAA



consensusID : consensus_12370#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [ACGACGCAACGCCAATGCCAAGAACCACCACCACCGCCCATGAAACCTGGAGACGCGCCAAGAGTACGCAGAGGCTGAGCTGAGCCAGGACGANGTACGACGACGACGACTATGGCGGCGGCGGCGTTGCTGTTGGCGCCAGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGGAGGGTTCGGTGCGCGGCGACTGCGCCGGCGCCGATGGGGGAGAAGACGGAGTACCGGGACGGGCCGGTGGAGCGCGCCTTCATGGGGCTGTTCGCGCGCAAGATGGAGAAGTACGCCGTCGTCTCCAGCTCCGGCGGGAAGGGGAAGGAGAAGAAGAAGGAGAAGAGCTCGAGGTCGGTGTGGGAGTGGGACTACGAGAGCTTCGTGGACGTGTCGCGGCGGGTGATGGTGGGGCGGACGCGGGCGCACAGCAGGAGGCCGTCCGCGAGGTGCTCCTCTCCATGCTCCCCCCCGGCNCCCCCGAGCAGTTCAAGAAGCTCTTCCCGCCGACGAGGTGGGCCTGCGAGTTCAACGCTGCCCTCAACGTCCCCTTCTTCCACTGGCTCGTCGGCCCATCAGAGGTTGTTGGAGGTTNAGGTCAATGGGGTTAAACAGAAGAGTGGAGTTCTTATAAAGAAATGCAGGGTACCTTGAAGAACAAGCGGCTTGCGTCGGAATTGTGCGTTAACATGT]

[+] EMBL AU076258             [ACGACGCAACGCCAATGCCAAGAACCACCACCACCGCCCATGAAACCTGGAGACGCGCCAAGAGTACGCAGAGGCTGAGCTGAGCCAGGACGANGTACGACGACGACGACTATGGCGGCGGCGGCGTTGCTGTTGGCGCCAGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGGAGGGTTCGGTGCGCGGCGACTGCGCCGGCGCCGATGGGGGAGAAGACGGAGTACCGGGACGGGCCGGTGGAGCGCGCCTTCATGGGGCTGTTCGCGCGCAAGATGGAGAAGTACGCCGTCGTCTCCAGCTCCGGCGGGAAGGGGAAGGAGAAGAAGAAGGAGAAGAGCTCGAGGTCGGTGTGGGAGTGGGACTACGAGAGCTTCGTGGACGTGTCGCGGCGGGTGATGGTGGGGCGGACGCGGGCGCACAGCAGGAGGCCGTCCGCGAGGTGCTCCTCTCCATGCTCCCCCCCGGCNCCCCCGAGCAGTTCAAGAAGCTCTTCCCGCCGACGAGGTGGGCCTGCGAGTTCAACGCTGCCCTCAACGTCCCCTTCTTCCACTGGCTCGTCGGCCCATCAGAGGTTGTTGGAGGTTNAGGTCAATGGGGTTAAACAGAAGAGTGGAGTTCTTATAAAGAAATGCAGGGTACCTTGAAGAACAAGCGGCTTGCGTCGGAATTGTGCGTTAACATGT]


>consensus_12370#2 ACGACGCAACGCCAATGCCAAGAACCACCACCACCGCCCATGAAACCTGGAGACGCGCCA AGAGTACGCAGAGGCTGAGCTGAGCCAGGACGANGTACGACGACGACGACTATGGCGGCG GCGGCGTTGCTGTTGGCGCCAGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGG AGGGTTCGGTGCGCGGCGACTGCGCCGGCGCCGATGGGGGAGAAGACGGAGTACCGGGAC GGGCCGGTGGAGCGCGCCTTCATGGGGCTGTTCGCGCGCAAGATGGAGAAGTACGCCGTC GTCTCCAGCTCCGGCGGGAAGGGGAAGGAGAAGAAGAAGGAGAAGAGCTCGAGGTCGGTG TGGGAGTGGGACTACGAGAGCTTCGTGGACGTGTCGCGGCGGGTGATGGTGGGGCGGACG CGGGCGCACAGCAGGAGGCCGTCCGCGAGGTGCTCCTCTCCATGCTCCCCCCCGGCNCCC CCGAGCAGTTCAAGAAGCTCTTCCCGCCGACGAGGTGGGCCTGCGAGTTCAACGCTGCCC TCAACGTCCCCTTCTTCCACTGGCTCGTCGGCCCATCAGAGGTTGTTGGAGGTTNAGGTC AATGGGGTTAAACAGAAGAGTGGAGTTCTTATAAAGAAATGCAGGGTACCTTGAAGAACA AGCGGCTTGCGTCGGAATTGTGCGTTAACATGT



consensusID : consensus_12370#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence
                              [GACGAGACAAGGGGAGCTGTGAAATGATNTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTAAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGTAAGAATCGGTTAACCAATTGTGTGGTACGATCTTGTTCTTGCTGCGTATGACTAATTATTAGTT]

[-] EMBL CA762551             [GACGAGACAAGGGGAGCTGTGAAATGATNTACGGCCAAGTGCCCCCACCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTAAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGTAAGAATCGGTTAACCAATTGTGTGGTACGATCTTGTTCTTGCTGCGTATGACTAATTATTAGTT]


>consensus_12370#3 GACGAGACAAGGGGAGCTGTGAAATGATNTACGGCCAAGTGCCCCCACCCTTGGAAGAAG ACCCAGCATCAAAACAGCCCTGCTATGCCAATCTATGTTCCATCTCAACACCCTAAGCGC CAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTGAATTCAGATGTTGG ACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACGT AAGAATCGGTTAACCAATTGTGTGGTACGATCTTGTTCTTGCTGCGTATGACTAATTATT AGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      GACACTCGACTGGACTGAAGGAGTAGAAAGAGACGCGCCAAGAGTACGCAGAGGCTGAGC 60
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      TGAGCCAGGACGACGTACGACGACGACGACTATGGCGGCGGCGGCGTTGCTGTTGGCGCC 120
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      AGTGGCGGCGCCATGGTCGCGTGTACCGTCTGCAGGGAGGAGGGTTCGGTGCGCGGCGAC 180
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      TGCTCCGGCGCCGATGGGGGATAAGACGGAGTACCGGGACGGGCCGGTGGATCGCGCCTT 240
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      CATGGGGCTGTTCGCGCGCAAGATGGAGAAGTACGCCGTCGTCTCCAGCTCCGGCGGGAA 300
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      GGGGAAGGAGAAGAAGAAGGAGAAGAGCTCGAGGTCGGTGTGGGAGTGGGACTACGAGAG 360
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      CTTCGTGGACGTGTCGCGGCGGGTGATGGTGGGGCGGACGCGGGCGCAGCAGCAGGAGGC 420
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      CGTCCGCGAGGTGCTCCTCTCCATGCTCCCCTCCGGCGCCCCCGAGCAGTTCAAGAAGCT 480
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------------
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      CTTCCCGCCGACGAGGTGGGCCTGCGAGTTCAACGCTGCCCTCACCGTCCCCTTCTTCCA 540
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      ------------------------------------------------------GAAGAG 6
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      CTGGCTCGTCGGCCCATCAGAGGTTGTGGAGGTTGAGGTCAATGGGGTGAAGCAGAAGAG 600
consensus_12370#2      ------------------------------------------------------------
                                                                                   

consensus_12370#1      TGGAGTGCTGATAAAGAAATGCAGGTACCTGGAG--AACAGCGGCTGCGTCGGAATGTGC 64
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      TGGAGTGCTGGTAAAGAAATGCAGGTACCTGGAG--AACAGCGGCTGCGTCGGAATGTGC 658
consensus_12370#2      ----------ACGACGCAACGCCAATGCCAAGAACCACCACCACCGCCCATGAAACCTGG 50
                                                                                   

consensus_12370#1      GTCAACATGTGCAAAATTCTGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTC 124
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      GTCAACATGTGCAAAATTCCGACGCAAAACTTCTTCACCAACGAGTTCGGACTCCCTCTC 718
consensus_12370#2      AGACGCGCCAAGAGTACGCAGAGGCTGAGCTGAGCCAG-GACGANGTACGACGACGACGA 109
                                                                                   

consensus_12370#1      ACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCA 184
consensus_12370#3      -------------GACGAGACAAGGGGAGCTGTGAAATGATNTACGGCCAAGTGCCCCCA 47
consensus_12370#0      ACCATGAATCCAAATTTTGAAGATATGAGCTGTGAAATGATTTACGGCCAAGTGCCCCCA 778
consensus_12370#2      CTATGGCGGCGGCGGCGTTGCTGTTGGCGCCAGTGGCGGCGCCATGGTCGCGTGTACCGT 169
                                                 * **        *    * ** *  ***  **  

consensus_12370#1      CCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTA-TGCCAATCTATGTTCCATCTC 243
consensus_12370#3      CCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTA-TGCCAATCTATGTTCCATCTC 106
consensus_12370#0      CCCTTGGAAGAAGACCCAGCATCAAAACAGCCCTGCTA-TGCCAATCTATGTTCCATCTC 837
consensus_12370#2      CTGCAGGGAGGAGGGTTCGGTGCGCGGCGACTGCGCCGGCGCCGATGGGGGAGAAGACGG 229
                       *    ** ** **     *   *    *  *   **    *** **    *      *  

consensus_12370#1      AACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTG 303
consensus_12370#3      AACACCCTAAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTG 166
consensus_12370#0      AACACCCTCAGCGCCAATTTGTCCCAAACTTCAGACTTAGAGCACATCACATCAATGCTG 897
consensus_12370#2      AGTACCGGGACGGGCCGGTGGAGCGCGCCTTCA----TGGGGCTGTTCGCGCGCAAGATG 285
                       *  ***   *  * *   * *  *    *****    * * **   ** *    * * **

consensus_12370#1      AATTCAGATGTCGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACA-----GCTCA 358
consensus_12370#3      AATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACA-----GCTCA 221
consensus_12370#0      AATTCAGATGTTGGACGTTTTCAGTTTCTTATGAAAACGCTCGCACCACA-----GCTCA 952
consensus_12370#2      GAGAAGTACGCCGT-CGTCTCCAGCTCCGGCGGGAAGGGGAAGGAGAAGAAGAAGGAGAA 344
                        *     * *  *  *** * *** * *    * **  *   * *  * *     *   *

consensus_12370#1      TAGCCCATAGTAGCTACGCCAAT-------CGACAGTTCATACGTTGTACCACTCTTTAT 411
consensus_12370#3      TAGCCCATAGTAGCTACGT-AAG-------AATCGGTTAACCAATTGTGTGGTACGATCT 273
consensus_12370#0      TAGCCCATAGTAGCTACGCCAAT-------CGACAGTTCATACGTTGTACCACTCTTTAT 1005
consensus_12370#2      GAGCTCGAGGTCGGTGTGGGAGTGGGACTACGAGAGCTTCGTGGACGTGTCGCGGCGGGT 404
                        *** *   ** * *  *  *              * *        **           *

consensus_12370#1      CATT-TGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAA 470
consensus_12370#3      TGTT-CTTGCTGCGTAT-GACTAATTATTAGTT--------------------------- 304
consensus_12370#0      CATT-TGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAA 1064
consensus_12370#2      GATGGTGGGGCGGACGCGGGCGCACAGCAGGAGGCCGTCCGCGAGGTGCTCCTCTCCATG 464
                         *               * *  *                                    

consensus_12370#1      AATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATA 530
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      AATTAAGGCTTTGCCTTTGAGCTCGAGAAATTTCCACATAAATATTTTACTAGTTAGATA 1124
consensus_12370#2      CTCCCCCCCGGCNCCCCCGAGCAGTTCAAGAAGCTCTTCCCGCCGACGAGGTGGGCCTGC 524
                                                                                   

consensus_12370#1      GTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGA 590
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      GTTTCCGCAATAATCCCTTATTTATTCCTCATGTAAAAAAATGCAGTGCTTGTATACAGA 1184
consensus_12370#2      GAGTTCAACGCTGCCCTCAACGTCCCCTTCTTCCACTGGCTCGTCGGCCCATCAGAGGTT 584
                                                                                   

consensus_12370#1      AATTCTTGTGCCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAATG 650
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      AATTCTTGTGCCCACTACCTGTAATTAAAGATCCATCATGGTATTAATATAGTACAAATG 1244
consensus_12370#2      GTTGGAGGTTNAGGTCAATGGGGTTAAACAGAAGAGTGGAGTTCTTATAAAGAAATGCAG 644
                                                                                   

consensus_12370#1      CAATACTTCAAATATTCATGNAATTGGTCTTGCTTCGATTTCGATGGNAACCGGTNAACC 710
consensus_12370#3      ------------------------------------------------------------
consensus_12370#0      CAATACTTCAAATATTAAAAAAAAAAAAAAAAAA-------------------------- 1278
consensus_12370#2      GGTACCTTGAAGAACAAGCGGCTTGCGTCGGAATTGTGCGTTAACATGT----------- 693
                                                                                   

consensus_12370#1      AAACTGCAGNGCATGGTNCATCAA 734
consensus_12370#3      ------------------------
consensus_12370#0      ------------------------
consensus_12370#2      ------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)