These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1263 fasta sequence [TGTGAAACCGCCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA-CAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTCCAGGGTTATTGGGACAGGAACGTTT-GGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCT-GGGCAGGCAGTTGCTCTCCGAGTAAC-AGCAGA-TAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTT-GGCAAGACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAATCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTGTTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCTTGGGGACCGTTTGGAA-GGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGT-GGCTTGGTGTAGACAATTGCTTGATGTTGAAGT-GGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGGTATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTATTTGCTCTTTAAAAA] [+] EMBL OSC111231 [TGTGAAACCGCCACCGCCAACCCAAACCAAACAAAGCNGCGCCGCCGATCTCGCCATGGCGCA NAGCAGCCGCGGCGAGTTNTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCNACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACA ] [+] EMBL C72027 [ ttgAACCGCCACCGANAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA NAGCAGCCGCGGCGAGTTCTCCGCNTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGTTGTTCGCAACGNTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCNGACGGTGATCCGCCTCGCGCCGGGNACGTACAGGGA ] [+] EMBL AK101494 [ CCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCAGCAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTCCAGGGTTATTGGGACAGGAACGTTT GGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCT GGGCAGGCAGTTGCTCTCCGAGTAAC AGCAGA TAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTT GGCAAGACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAATCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTGTTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCTTGGGGACCGTTTGGAA GGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGT GGCTTGGTGTAGACAATTGCTTGATGTTGAAGT GGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGGTATTT ] [+] EMBL AU056649 [ CCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA CAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGA CGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGANGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTCCAGGGTTATTGGGACAGGAACGTTTGGGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCTNGGGCANGCAGTTGCTCTCCGAGTAACAAGCAGATTAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTTGGGCAAGACACATTATATTTACATTATGGANAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGANTTCATCTTCGGCAACTCTATTGCCCTGT ] [+] EMBL C72851 [ CCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGCGCA CAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCGGAGGCGGA CGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGACGCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGGGAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCGCCCGAGGCCACCGTCATCANCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCGTTCAGGGTTATTGGGACAGG ACGTTT TGATGCGGAACAATTATTTTTGAAGGGGAAGATTTCATCGCAGAGAATATCAC ] [+] EMBL CF323944 [ AACGTTT GGATGCGGAACAATTATTGTGGAGGGGGAGGATTTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCT GGGCAGGCAGTTGCTCTCCGAGTAAC AGCAGA TAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTT GGCAAGACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAACTGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAATCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTGTTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCTTGGGGACCGTTTGGAAGGGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCAT AAACCGAGTGGGCTTGGTGTAGACAATTGCTTGATTTTGAAGTGGGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGC ] [+] EMBL AU172440 [ TGGATCGTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGT GGCTTGGTGTAGACAATTGCTTGATGTTGAAGT GGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTATTTGCTCTTTAAAAA] consensusID : consensus_12385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 305 fasta sequence [TCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF312422 [TCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU056650 [ TGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTNATCCCAGGATTGTAGTTCATCCCTCNTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAA ] consensusID : consensus_12385#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [TCCAGCCCTTGAAAGGCCTTGGTTTATCCAAATGATGGCAATAAAAGTACCAGTTTCAGCATAGTTTAATCCCAGGATTGTAGTTCATCCCCCCCCCCTAGTTTATTTTAAAAAAAATTTTGGAGGGGGTATTATAAGGGTAACATTTGGTCAACTTGGGCCCCCGCAATTGTATTGAGGAAAAATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGGGGGTTATAAAGGAATTCGAAATTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF312421 [TCCAGCCCTTGAAAGGCCTTGGTTTATCCAAATGATGGCAATAAAAGTACCAGTTTCAGCATAGTTTAATCCCAGGATTGTAGTTCATCCCCCCCCCCTAGTTTATTTTAAAAAAAATTTTGGAGGGGGTATTATAAGGGTAACATTTGGTCAACTTGGGCCCCCGCAATTGTATTGAGGAAAAATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGGGGGTTATAAAGGAATTCGAAATTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 TGTGAAACCGCCACCGCCAACCCAAACCAAACAAAGCCGCGCCGCCGATCTCGCCATGGC 60 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 GCACAGCAGCCGCGGCGAGTTCTCCGCGTGGCGCCGCCGGGGCGAGGAGGGGCGCGCGCG 120 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 GAGGCGGAGCGGGGGGAGGAGGGGGAGGCGGTGTTCGCGACGGTGCAGGCGGCGGTGGAC 180 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 GCGGTGCCGGTGGGGAACAGGGTGCGGACGGTGATCCGCCTCGCGCCGGGGACGTACAGG 240 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 GAGCCCGTCTACGTCGCCAAGGCCAAGAACCTCGTCACCCTCTCCGGCGAGGCCGGCTCG 300 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 CCCGAGGCCACCGTCATCACCTGGGACAACACCGCCACCCGCATCAAGCACTCCCAGTCG 360 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 TCCAGGGTTATTGGGACAGGAACGTTTGGATGCGGAACAATTATTGTGGAGGGGGAGGAT 420 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 TTCATCGCAGAGAATATCACATTTGAGAACTCAGCTCCTCAGGGGTCTGGGCAGGCAGTT 480 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 GCTCTCCGAGTAACAGCAGATAGGTGTGCCTTCTACAATTGCAGGTTCCTTGGTTGGCAA 540 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 GACACATTATATTTACATTATGGAAAACAATACTTAAGGGACTGTTACATCGAAGGTAAC 600 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 TGTGACTTCATCTTCGGCAACTCTATTGCCCTGTTGGAACATTGCCATATTCATTGCAAA 660 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 TCAGCGGGTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTG 720 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 TTCTTGAGGTGTATTATTACTGGAAATGGAGAAGCTGGATATATGTTCCTGGGTCGGCCT 780 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 TGGGGACCGTTTGGAAGGGTTGTCTTTGCGCACACTTTTATGGATCGTTGTATTAAGCCT 840 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 GCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTAC 900 consensus_12385#1 ------------------------------------------------------------ consensus_12385#2 ------------------------------------------------------------ consensus_12385#0 AGGTGCTCAGGGCCAGGTTTCCGCCCATCAAACCGAGTGGCTTGGTGTAGACAATTGCTT 960 consensus_12385#1 ----------------------------------TCATTGATCCAGACCTTGATAGGCCT 26 consensus_12385#2 -----------------------------------------TCCAGCCCTTGAAAGGCCT 19 consensus_12385#0 GATGTTGAAGTGGAGAATTTCCTTTCTCACTCTTTCATTGATCCAGACCTTGATAGGCCT 1020 ***** ****** ****** consensus_12385#1 TGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATT 86 consensus_12385#2 TGGTTTATCCAAATGATGGCAATAAAAGTACCAGTTTCAGCATAGTTTAATCCCAGGATT 79 consensus_12385#0 TGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGTCTAATCCCAGGATT 1080 *** * ***** *********************** ********** ************* consensus_12385#1 GTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGT 146 consensus_12385#2 GTAGTTCATCCCCCCCCCCTAGTTTATTTTAAAAAAAATTTTGGAGGGGGTATTATAAGG 139 consensus_12385#0 GTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGT 1140 ************ ** ******* *** *** *** ************ ********** consensus_12385#1 GTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTC 206 consensus_12385#2 GTAACATTTGGTCAACTTGGGCCCCCGCAATTGTATTGAGGAAAAATATTTGTTGTTTTC 199 consensus_12385#0 GTAACATTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGGTATTTGTTGTTTTC 1200 ******************* **** ***************** * ************** consensus_12385#1 CATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTAAAAAAAAAAAAA 266 consensus_12385#2 CATGAGCCTTGTCCCTTGGGGGTTATAAAGGAATTCGAAATTTAATTTAAAAAAAAAAAA 259 consensus_12385#0 CATGAGCCTTGTCCCTTGAGGACTATAAAGGAATACGAAATTAAATTATTTGCTCTTTAA 1260 ****************** ** *********** ******* **** ** consensus_12385#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 305 consensus_12385#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 296 consensus_12385#0 AAA------------------------------------ 1263 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||