These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [TTTTTTTTTTTTTTTTTAAAACCGGCCGGAGAGGGAGGGAAAAGATTATTACATATGTGTTAAAAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGCTCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGG] [+] EMBL CF281593 [TTTTTTTTTTTTTTTTTAAAACCGGCCGGAGAGGGAGGGAAAAGATTATTACATATGTGTTAAAAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCATCGGGGGTAGGCTCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGG] consensusID : consensus_1241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GATACGCTACTAACGGCATGATGTTGTTTTTTTTTTTTTTTTTAAAAACCCGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACTTTTAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTTTTTTTAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA] [+] EMBL CF299597 [GATACGCTACTAACGGCATGATGTTGTTTTTTTTTTTTTTTTTAAAAACCCGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACTTTTAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTTTTTTTAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1241#0 ------------------------------------------------------------ consensus_1241#1 GATACGCTACTAACGGCATGATGTTGTTTTTTTTTTTTTTTTTAAAAACCCGATACCATC 60 consensus_1241#0 ------------------------------------------------------------ consensus_1241#1 CATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTAT 120 consensus_1241#0 -------------------------------------------TTTTTTTTTTTTTTTTT 17 consensus_1241#1 ATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACTTT 180 * * * * ** *** consensus_1241#0 AAAACCGGCCGGAGAGGGAGGGAAAAGATTATTACATATGTGTTAAAAGCAGAGGCCATT 77 consensus_1241#1 TAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTTTTTTTAGCAGAGGCCATT 240 *********************** **************** ** ************* consensus_1241#0 GAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATAT 137 consensus_1241#1 GAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATAT 300 ************************************************************ consensus_1241#0 CATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGC 197 consensus_1241#1 CATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGC 360 ************************************************************ consensus_1241#0 GATGCTTGATCTTAGCTTAGTTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGA 257 consensus_1241#1 GATGCTTGATCTTAGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGA 420 ***************************** ****************************** consensus_1241#0 TGAAGCTAATCAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATACGGACAAAGGCAT 317 consensus_1241#1 TGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGA--------------- 465 ********************************** ********** consensus_1241#0 CGGGGGTAGGCTCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCA 377 consensus_1241#1 ------------------------------------------------------------ consensus_1241#0 GCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCT 437 consensus_1241#1 ------------------------------------------------------------ consensus_1241#0 GTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGA 497 consensus_1241#1 ------------------------------------------------------------ consensus_1241#0 TCGAAGCAGG 507 consensus_1241#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||