cluster # 12411

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Oryza sativa
cluster # 12411 cluster # 12411 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12411#0 length = 1781 sequences # 7

consensus_12411#1 length = 817 sequences # 2
consensus_12411#2 length = 435 sequences # 1

consensusID : consensus_12411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1781
fasta sequence

                              [CTCCTCCCCCACCACTGCCTCCGGCGATTTCCTCCTCCTCCCCGTTCTCGAAGCTTCTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGAAGGCCAGGCACGGCGCCGCTGACCTCTGCCTCCGCGAGGTCGGC-CTCCTC-CTCCCCCGC-CGCTTCGCCCGC-CGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGAGTAAATCAGGACACTCTTCCAATATTCATCTTAATGCAATCACAATAGATCCGAGGAATCCAAATCTTCTTGCAGTTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTACTGTCCACCACATCTTATTGGCAATAGATTTGTTGGAATAACAGGCTTAGCATTCTCTCACCAGAGTGAGTTGCTTATATCTTACAACAATGAGAATATTTATCTCTTCCCTAAAAATGGAGGACTGGGACCAGACCCAAAGTCATCTGTCAAGATTGAAGCCAACAAAGGGTCCAAATCAACAATAGTTTCATCTGGAGAAGATGTTGATCGACCTGCACCACTGATGTATGCTGGACATCGCAATTGTGAGACTGTCAAGGGAGTGACATTCATTGGGCCAAATCATGAATATGTCGCCAGTGGGTCAGACTGTGGGCGATTATTTATTTGGAGAAAGAAAGATGGGAAGTTTTTGCGGGCAATGGAGGGTGATGAATGTGTTGTAAACTGTATTGAGCCCCATCCGCACACTATGACAATTGCAAGCAGCGGAATCGATAATGACGTAAAGATATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACAGCAAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGAGAGAGACGTGCTATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTTATCTATGGCTCAACCCTGGAAACATTGCTAAATTGTACATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGTTTTTCAGTTAGCGGTGTATGAGTG---------CCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTGAACAAACTAGCACGTACAGAGAATTCAGATTCTCTTCAAGCATATGTCAAGTGTAAATAAGTTCACATAAATAAGCAGACATACAATACATAC]

[+] EMBL AK073941             [CTCCTCCCCCACCACTGCCTCCGGCGATTTCCTCCTCCTCCCCGTTCTCGAAGCTTCTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGAAGGCCAGGCACGGCGCCGCTGACCTCTGCCTCCGCGAGGTCGGC CTCCTC CTCCCCCGC CGCTTCGCCCGC CGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGAGTAAATCAGGACACTCTTCCAATATTCATCTTAATGCAATCACAATAGATCCGAGGAATCCAAATCTTCTTGCAGTTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTACTGTCCACCACATCTTATTGGCAATAGATTTGTTGGAATAACAGGCTTAGCATTCTCTCACCAGAGTGAGTTGCTTATATCTTACAACAATGAGAATATTTATCTCTTCCCTAAAAATGGAGGACTGGGACCAGACCCAAAGTCATCTGTCAAGATTGAAGCCAACAAAGGGTCCAAATCAACAATAGTTTCATCTGGAGAAGATGTTGATCGACCTGCACCACTGATGTATGCTGGACATCGCAATTGTGAGACTGTCAAGGGAGTGACATTCATTGGGCCAAATCATGAATATGTCGCCAGTGGGTCAGACTGTGGGCGATTATTTATTTGGAGAAAGAAAGATGGGAAGTTTTTGCGGGCAATGGAGGGTGATGAATGTGTTGTAAACTGTATTGAGCCCCATCCGCACACTATGACAATTGCAAGCAGCGGAATCGATAATGACGTAAAGATATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACAGCAAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGAGAGAGACGTGCTATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTTATCTATGGCTCAACCCTGGAAACATTGCTAAATTGTACATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGT                                                                                                                                                                           ]
[+] EMBL CB653213             [                               CTCCTCCCCCCCGTTCTCGAAGCTTCTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGAAGGCCAGGCACGGCGCCGCTGACCTCTGCCTCCGCGAGGTCGGC CTCCTC CTCCCCCGC CGCTTCGCCCGC CGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGACACTCTTTGAGTAAATCAGGACACTCTTCCAATATTCATCTTAATGCAATCACAATAGATCCGAGGAATCCAAATCTTCTTGCAGTTGGAGGAAGCAATTGTTATGCTCCTGTCTATGACATCCGCAAATACCAATGGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB652444             [                                                        CTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGAAGGCCAGGCACGGCGCCGCTGACCTCTGCCTCCGCGAGGTCGGC CTCCTC CTCCCCCGC CGCTTCGCCCGC CGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGAGTAAATCAGGACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB652443             [                                                                                                                                          GTCGGCACTCCTCGCTCCCCCGCGCGCTTCGCCCGCTCGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGAGTAAATCAGGACACTCTTCCAATATTCATCTTAATGCAATCACAATAGATCCGAGGAATCCAAATCTTCTTGCAGTTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTACTGTCCACCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK060182             [                                                                                                                                                                                                                                                                                                                                                                                             CCAAGCTCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGAGTAAATCAGGACACTCTTCCAATATTCATCTTAATGCAATCACAATAGATCCGAGGAATCCAAATCTTCTTGCAGTTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTACTGTCCACCACATCTTATTGGCAATAGATTTGTTGGAATAACAGGCTTAGCATTCTCTCACCAGAGTGAGTTGCTTATATCTTACAACAATGAGAATATTTATCTCTTCCCTAAAAATGGAGGACTGGGACCAGACCCAAAGTCATCTGTCAAGATTGAAGCCAACAAAGGGTCCAAATCAACAATAGTTTCATCTGGAGAAGATGTTGATCGACCTGCACCACTGATGTATGCTGGACATCGCAATTGTGAGACTGTCAAGGGAGTGACATTCATTGGGCCAAATCATGAATATGTCGCCAGTGGGTCAGACTGTGGGCGATTATTTATTTGGAGAAAGAAAGATGGGAAGTTTTTGCGGGCAATGGAGGGTGATGAATGTGTTGTAAACTGTATTGAGCCCCATCCGCACACTATGACAATTGCAAGCAGCGGAATCGATAATGACGCAAAGATATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACAGCAAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGAGAGAGACGTGCTATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTTATCTATGGCTCAACCCTGGAAACATTGCTAAATTGTACATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGTTTTTCAGTTAGCGGTGTATGAGTGCCAGATGTTCCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTGAACAAACTAGCACGTACAGAGAATTCAGATTCTCTTCAAGCATATGTCAAGTGTAAATAAGTTCACATAAATAAGCAGACA            ]
[-] EMBL CB623148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTCCAAATCAACAATAGTTTCATCTGGAGAAGATGTTGATCGACCTGCACCACTGATGTATGCTGGACATCGCAATTGTGAGACTGTCAAGGGAGTGACATTCATTGGGCCAAATCATGAATATGTCGCCAGTGGGTCAGACTGTGGGCGATTATTTATTTGGAGAAAGAAAGATGGGAAGTTTTTGCGGGCAATGGAGGGTGATGAATGTGTTGTAAACTGTATTGAGCCCCATCCGCACACTATGACAATTGCAAGCAGCGGAATCGATAATGACGTAAAGATATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACGGCAAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGAGAGAGACGTGCTATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTGATCTATGGCTCAACCCTGGAAACATTGCTAAATTGTACATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGTTTTTCAGTTAGCGGTGTATGAGTG         CCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTGAACAAACTAGCACGTACAGAGAATTCAGATTCTCTTCAAGCATATGTCAAGTGTAAATAAGTTCACATAAATAAGCAGACATACAA       ]
[-] EMBL CB623146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TAGTTTCATCTGGAGAAGATGTTGATCGACCTGCACCACTGATGTATGCTGGACATCGCAATTGTGAGACTGTCAAGGGAGTGACATTCATTGGGCCAAATCATGAATATGTCGCCAGTGGGTCAGACTGTGGGCGATTATTTATTTGGAGAAAGAAAGATGGGAAGTTTTTGCGGGCAATGGAGGGTGATGAATGTGTTGTAAACTGTATTGAGCCCCATCCGCACACTATGACAATTGCAAGCAGCGGAATCGATAATGACGTAAAGATATGGACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGTTGAAGCCTCGTAAAAGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCATCACGACGCAGACGGCAAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGAGAGAGACGTGCTATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTGATCTATGGCTCAACCCTGGAAACATTGCTAAATTGTACATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGTTTTTCAGTTAGCGGTGTATGAGTG         CCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTGAACAAACTAGCACGTACAGAGAATTCAGATTCTCTTCAAGCATATGTCAAGTGTAAATAAGTTCACATAAATAAGCAGACATACAATACATAC]




>consensus_12411#0
CTCCTCCCCCACCACTGCCTCCGGCGATTTCCTCCTCCTCCCCGTTCTCGAAGCTTCTTC
GCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGAAGGCCAGGCACGGCGCCGCT
GACCTCTGCCTCCGCGAGGTCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCC
GCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC
TGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGGGGTCCGATGAC
CAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGC
CATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTC
ACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCT
ACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGT
CCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACA
AATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGAGTAAATCAGGACACTCTTCC
AATATTCATCTTAATGCAATCACAATAGATCCGAGGAATCCAAATCTTCTTGCAGTTGGA
GGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCT
GATTACCCATCTGACTGCTACTGTCCACCACATCTTATTGGCAATAGATTTGTTGGAATA
ACAGGCTTAGCATTCTCTCACCAGAGTGAGTTGCTTATATCTTACAACAATGAGAATATT
TATCTCTTCCCTAAAAATGGAGGACTGGGACCAGACCCAAAGTCATCTGTCAAGATTGAA
GCCAACAAAGGGTCCAAATCAACAATAGTTTCATCTGGAGAAGATGTTGATCGACCTGCA
CCACTGATGTATGCTGGACATCGCAATTGTGAGACTGTCAAGGGAGTGACATTCATTGGG
CCAAATCATGAATATGTCGCCAGTGGGTCAGACTGTGGGCGATTATTTATTTGGAGAAAG
AAAGATGGGAAGTTTTTGCGGGCAATGGAGGGTGATGAATGTGTTGTAAACTGTATTGAG
CCCCATCCGCACACTATGACAATTGCAAGCAGCGGAATCGATAATGACGTAAAGATATGG
ACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGTTGAAGCCTCGTAAA
AGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGCA
TCACGACGCAGACAGCAAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGC
ACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGAGAGAGACGTGCTATCTGATGAGGAT
GAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTTATCTATGGCTCAACCCTGG
AAACATTGCTAAATTGTACATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGTT
TTTCAGTTAGCGGTGTATGAGTGCCTGATCTATCTCCATCATCTCCACTCCCGCCCATTG
ATCCAGTGAACAAACTAGCACGTACAGAGAATTCAGATTCTCTTCAAGCATATGTCAAGT
GTAAATAAGTTCACATAAATAAGCAGACATACAATACATAC

consensusID : consensus_12411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 817
fasta sequence

                              [TTTCCTCCCCTTCCCCCTTCTCGAAGCTTCTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGACGGCCAGGCACGGCGCCGCCGACCTCTGCCTCCGCGAGGTCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCAGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATGTAGGGAACCACGGACCCCCTCCCTCCTTCACAAATGCTCATTTTCAGCTATGTATAAAATGCAAATGAATTTCTTACTGTATAACTAGCCACTTCCCTTCTTGTGCAGTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGATTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTACTGTCCACCA]

[+] EMBL CB623145             [TTTCCTCCCCTTCCCCCTTCTCGAAGCTTCTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGACGGCCAGGCACGGCGCCGCCGACCTCTGCCTCCGCGAGGTCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCAGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATGTAGGGAACCACGGACCCCCTCCCTCCTTCACAAATGCTCATTTTCAGCTATGTATAAAATGCAAATGAATTTCTTACTGTATAACTAGCCACTTCCCTTCTTGTGCAGTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGATTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTACTGTCCACCA]
[+] EMBL CB623147             [TTTCCTCCCCTTCCCGCTTCTCGAAGCTTCTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGACGGCCAGGCACGGCGCCGCCGACCTCTGCCTCCGCGAGGTCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCAGATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATGTAGGGAACCACGGACCCCCTCCCTCCTTCACAAATGCTCATTTTCAGCTATGTATAAAATGCAAATGAATTTCTTACTGTATAACTAGCCACTTCCCTTCTTGTGCAGTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGATACTCTTTGATTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTACTGT      ]




>consensus_12411#1
TTTCCTCCCCTTCCCCCTTCTCGAAGCTTCTTCGCCCTCGCCGCCATGCGCCGCCCGTGG
AAGCACCCGACGACGGCCAGGCACGGCGCCGCCGACCTCTGCCTCCGCGAGGTCGGCCTC
CTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCCGCCTCCGAGGATCTTGTAATGCGCCTG
CAGGTTCACAGGAAGCTCAACAGGCATACAGGCTGCGTGAACACGGTAGGCTTCAACGCA
GATGGCGATACCCTCATATCGGGGTCCGATGACCAGATGGTGATGCTGTGGGACTGGGAC
ACTGGTGCAATCAAATTACAGTTTCCTTCAGGCCATAGCAACAATGTGTTCCAAGCCCGT
TTCATGCCATACACGAACGATCAAACCATTGTCACTTGTGCTGCTGATGGAGAGGTGAGA
CTTGCCAAGATAGGGGATGGTGGAGATGTACCTACTACATTGCTAGGCGATCATGATGGA
AGGGCTCACAAGTTGGCCATTGAGCCTGGCAGTCCTTATATTTTCTATAGCTGCGGCGAA
GATGGGCTTGTTCAACATGTAGGGAACCACGGACCCCCTCCCTCCTTCACAAATGCTCAT
TTTCAGCTATGTATAAAATGCAAATGAATTTCTTACTGTATAACTAGCCACTTCCCTTCT
TGTGCAGTTTGATTTGAGGACAAATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTT
GATTGGAGGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGG
ATCTTCTGATTACCCATCTGACTGCTACTGTCCACCA

consensusID : consensus_12411#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [GGATTCGGCACGAGAAAATCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGNATCACGACGCNGACGGCNAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGANAGAGACGTGCTATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTGATCTATGGCTCAACTCTTGAAACATNGNNGNATTGTNCATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGTTTTTCAGTTAGCGGTGTNTGAGTGCCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTGAACAAACTAGCACGTNCNGAGAATTCAGATTCTCTTCNNGCATATGTCAAGTGTNAATAAGT]

[+] EMBL BE228312             [GGATTCGGCACGAGAAAATCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTCTGGNATCACGACGCNGACGGCNAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGGACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGANAGAGACGTGCTATCTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTGATCTATGGCTCAACTCTTGAAACATNGNNGNATTGTNCATATACAGTGATGTTTTATCCTGTTTTCATGGACGTGTGTTTTTCAGTTAGCGGTGTNTGAGTGCCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTGAACAAACTAGCACGTNCNGAGAATTCAGATTCTCTTCNNGCATATGTCAAGTGTNAATAAGT]




>consensus_12411#2
GGATTCGGCACGAGAAAATCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCATGTTC
TGGNATCACGACGCNGACGGCNAGCAGCTGGAGATGATGATTCATCTGAGGATCTTGAGG
ACAGCACAGGATTGCTTAATCTTGTACTCCGAGCTGCGGANAGAGACGTGCTATCTGATG
AGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTCTCAACTGATCTATGGCTCAAC
TCTTGAAACATNGNNGNATTGTNCATATACAGTGATGTTTTATCCTGTTTTCATGGACGT
GTGTTTTTCAGTTAGCGGTGTNTGAGTGCCTGATCTATCTCCATCATCTCCACTCCCGCC
CATTGATCCAGTGAACAAACTAGCACGTNCNGAGAATTCAGATTCTCTTCNNGCATATGT
CAAGTGTNAATAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12411#0      CTCCTCCCCCACCACTGCCTCCGGCGATTTCCTCCTCCTCCCCGTTCTCGAAGCTTCTTC 60
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      GCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGAAGGCCAGGCACGGCGCCGCT 120
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      GACCTCTGCCTCCGCGAGGTCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCGCGGCC 180
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      GCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATACAGGC 240
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      TGCGTGAACACGGTAGGCTTCAACGCGGATGGCGATACCCTCATATCGGGGTCCGATGAC 300
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      CAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTTCAGGC 360
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      CATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCATTGTC 420
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      ACTTGTGCTGCTGATGGAGAGGTGAGACTTGCCAAGATAGGGGATGGTGGAGATGTACCT 480
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      ACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCTGGCAGT 540
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      CCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATTTTGATTTGAGGACA 600
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      AATACAGCCACAAAATTATTTCAGTGCAGAAACTCTTTGAGTAAATCAGGACACTCTTCC 660
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      AATATTCATCTTAATGCAATCACAATAGATCCGAGGAATCCAAATCTTCTTGCAGTTGGA 720
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      GGAAGCAATTGTTATGCTCGTGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCT 780
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      GATTACCCATCTGACTGCTACTGTCCACCACATCTTATTGGCAATAGATTTGTTGGAATA 840
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      ACAGGCTTAGCATTCTCTCACCAGAGTGAGTTGCTTATATCTTACAACAATGAGAATATT 900
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      TATCTCTTCCCTAAAAATGGAGGACTGGGACCAGACCCAAAGTCATCTGTCAAGATTGAA 960
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      GCCAACAAAGGGTCCAAATCAACAATAGTTTCATCTGGAGAAGATGTTGATCGACCTGCA 1020
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      CCACTGATGTATGCTGGACATCGCAATTGTGAGACTGTCAAGGGAGTGACATTCATTGGG 1080
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      ------------------------------------------------------------
                                                                                   

consensus_12411#0      CCAAATCATGAATATGTCGCCAGTGGGTCAGACTGTGGGCGATTATTTATTTGGAGAAAG 1140
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      --------------------------------TTTCCTCCCCTTCCCCCTTCTCGAAGCT 28
                                                                                   

consensus_12411#0      AAAGATGGGAAGTTTTTGCGGGCAATGGAGGGTGATGAATGTGTTGTAAACTGTATTGAG 1200
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      TCTTCGCCCTCGCCGCCATGCGCCGCCCGTGGAAGCACCCGACGACGGCCAGGCACGGCG 88
                                                                                   

consensus_12411#0      CCCCATCCGCACACTATGACAATTGCAAGCAGCGGAATCGATAATGACGTAAAGATATGG 1260
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      CCGCCGACCTCTGCCTCCGCGAGGTCGGCCTCCTCCTCCCCCGCCGCTTCGCCCGCCGCG 148
                                                                                   

consensus_12411#0      ACTCCCTCTGCCACTGAGCGAGCACCAGTGGTAAACATTGAGGAGTTGAAGCCTCGTAAA 1320
consensus_12411#2      -------------------------------------------------------GGATT 5
consensus_12411#1      CGGCCGCCTCCGAGGATCTTGTAATGCGCCTGCAGGTTCACAGGAAGCTCAACAGGCATA 208
                                                                              * *  

consensus_12411#0      AGAAGAACAAAACTCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCAT---GTTCTG 1377
consensus_12411#2      CGGCACGAGAAAATCTGGCACTTTTCTCTACCAGAGGAATTGATCTTTCAT---GTTCTG 62
consensus_12411#1      CAGGCTGCGTGAACACGGTAGGCTTCAACGCAGATGGCGATACCCTCATATCGGGGTCCG 268
                                  *    ** *   ***    *    **   *   **   **   * ** *

consensus_12411#0      GCATCACGACGCAGACAGCAAGCAGCTGGAGA--TGATG-ATTCATCTGAGGAT---CTT 1431
consensus_12411#2      GNATCACGACGCNGACGGCNAGCAGCTGGAGA--TGATG-ATTCATCTGAGGAT---CTT 116
consensus_12411#1      ATGACCAGATGGTGATGCTGTGGGACTGGGACACTGGTGCAATCAAATTACAGTTTCCTT 328
                           *  ** *  **      *   ****     ** ** * ***  * *   *   ***

consensus_12411#0      GAGG--ACAGCA-----------CAGGATTGCTTAATCTTGTACTC---CGAGCTGCGGA 1475
consensus_12411#2      GAGG--ACAGCA-----------CAGGATTGCTTAATCTTGTACTC---CGAGCTGCGGA 160
consensus_12411#1      CAGGCCATAGCAACAATGTGTTCCAAGCCCGTTTCATGCCATACACGAACGATCAAACCA 388
                        ***  * ****           ** *   * ** **    *** *   *** *     *

consensus_12411#0      GAGAGACGTGCTAT-CTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTC 1534
consensus_12411#2      NAGAGACGTGCTAT-CTGATGAGGATGAAGAATCCTCCGAGGACTCTGGAGATTGTAGTC 219
consensus_12411#1      TTGTCACTTGTGCTGCTGATGGAGA-GGTGAGACTTGCCAAGATAGGGGATGGTGGAGAT 447
                         *  ** **   * ******  ** *  **  * * * * **    ***   ** **  

consensus_12411#0      TCAACTTATCTATGGCTCAACCCTG------GAAACATTGCTAAATTGTACATATA---- 1584
consensus_12411#2      TCAACTGATCTATGGCTCAACTCTT------GAAACATNGNNGNATTGTNCATATA---- 269
consensus_12411#1      GTACCTACTACATTGCTAGGCGATCATGATGGAAGGGCTCACAAGTTGGCCATTGAGCCT 507
                         * **  *  ** ***   *  *       ***           ***  ***  *    

consensus_12411#0      --CAGTG---ATGTTTTATCCTGTTTTCATGGACGTGTGTTT-TTCAGT---TAGCGGTG 1635
consensus_12411#2      --CAGTG---ATGTTTTATCCTGTTTTCATGGACGTGTGTTT-TTCAGT---TAGCGGTG 320
consensus_12411#1      GGCAGTCCTTATATTTTCTATAGCTGCGGCGAAGATGGGCTTGTTCAACATGTAGGGAAC 567
                         ****    ** **** *   * *     * *  ** * ** ****     *** *   

consensus_12411#0      TATGAGTGCCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTG--AACAA 1693
consensus_12411#2      TNTGAGTGCCTGATCTATCTCCATCATCTCCACTCCCGCCCATTGATCCAGTG--AACAA 378
consensus_12411#1      CACGGACCCCCTCCCTCCTTCACAAATGCTCATTTTCAGCTATGTATAAAATGCAAATGA 627
                          *    **    **   **    **   ** *  *  * **  **  * **  **  *

consensus_12411#0      ACTAGCACGTACAGAGAATTCAGATTCTCTTCAAGCATATGTCAAGT-GTAAATAAGTTC 1752
consensus_12411#2      ACTAGCACGTNCNGAGAATTCAGATTCTCTTCNNGCATATGTCAAGT-GTNAATAAGT-- 435
consensus_12411#1      ATTTCTTACTGTATAACTAGCCACTTCCCTTCTTGTGCAGTTTGATTTGAGGACAAATAC 687
                       * *      *    *     *   *** ****  *   *  *  * * *   * ** *  

consensus_12411#0      ACATAAATAAGCAGACATACAATACATAC------------------------------- 1781
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      AGCCACAAAATTATTTCAGTGCAGAAACTCTTTGATTGGAGGAAGCAATTGTTATGCTCG 747
                                                                                   

consensus_12411#0      ------------------------------------------------------------
consensus_12411#2      ------------------------------------------------------------
consensus_12411#1      TGTCTATGACATCCGCAAATACAAATGGGATGGATCTTCTGATTACCCATCTGACTGCTA 807
                                                                                   

consensus_12411#0      ----------
consensus_12411#2      ----------
consensus_12411#1      CTGTCCACCA 817