These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1077 fasta sequence [GCCATCCAGCACTTTGCGAGGTCGCTTTCGTTTCGCCTCCTTCGTCGGCCCCGGACCGGACCGGACAGAGGCATGTCCTGATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGGGAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCGCGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCGCGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACGCCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACGACGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCGCGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTACCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGAGTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCGGAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCAGTAGCCATGGGAGGAGACAAGCATTTGGTTAATGGTTTGGTAAATCCCCACCTCATTATTTTTATACGCCCAAGACATGAGGAGACGGGTTAAACAACGCAACGGAAGTGAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTCTTCATTTGGCCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCTTGATTCTAGCCTT] [+] EMBL AK111350 [GCCATCCAGCACTTTGCGAGGTCGCTTTCGTTTCGCCTCCTTCGTCGGCCCCGGACCGGACCGGACAGAGGCATGTCCTGATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGGGAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCGCGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCGCGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACGCCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACGACGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCGCGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTACCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGAGTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCGGAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCAGTAGCCATGGGAGGAGACAAGCATTTGGTTAATGGTTTGGTAAATCCCCACCTCATTATTTTTATACGCCCAAGACATGAGGAGACGGGTTAAACAACGCAACGGAAGTGAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTCTTCATTTGGCCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCTTGATTCTAGCCTT] consensusID : consensus_1242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [GGCGGCCACGTCGTGGATGGTGCGGCGAGTTCATGCCGGCGTACACCGAGGAGCCGCTCGCNTGCGCGGCATGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCTTCGGGCCGCGCGGGCGCAGCACGACTGCCGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACTCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAGTAGGCAGGATGCCATGTATGGGAGGAGACAAAGGTTCGATCGAAATGAGCGGGGAAGGTAGAGCCCC] [-] EMBL CA754243 [GGCGGCCACGTCGTGGATGGTGCGGCGAGTTCATGCCGGCGTACACCGAGGAGCCGCTCGCNTGCGCGGCATGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCTTCGGGCCGCGCGGGCGCAGCACGACTGCCGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACTCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAGTAGGCAGGATGCCATGTATGGGAGGAGACAAAGGTTCGATCGAAATGAGCGGGGAAGGTAGAGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1242#0 GCCATCCAGCACTTTGCGAGGTCGCTTTCGTTTCGCCTCCTTCGTCGGCCCCGGACCGGA 60 consensus_1242#1 ------------------------------------------------------------ consensus_1242#0 CCGGACAGAGGCATGTCCTGATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGG 120 consensus_1242#1 ------------------------------------------------------------ consensus_1242#0 GAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCG 180 consensus_1242#1 ------------------------------------------------------------ consensus_1242#0 CGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCG 240 consensus_1242#1 ------------------------------------------------------------ consensus_1242#0 CGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACG 300 consensus_1242#1 --------GGCGGCCACGTCGTGGATGG-TGCGGCGAGTTCATGCCGGCGT------ACA 45 ***************** ** *** * ************ * ** consensus_1242#0 CCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACG 360 consensus_1242#1 CCGAGGAGCCGCTCGCNTGCGCGGCATGCGGCTGCCACCGCAGCTTCCACCGCCGGGACC 105 *** ** * *** ***** ** *************************** **** consensus_1242#0 A-----CGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCG 415 consensus_1242#1 CTTCTTCGGGCCGC-GCGGGCGCAGC-ACGACTGCCGCAGCTGCACCTGCCGGCGTC--- 160 ***** ** ** * ***** ** **** * * ** *** ** * consensus_1242#0 CGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTA 475 consensus_1242#1 CATCAACTCGCGCGCACCACTCGCGCTGCTGCTGCCGC--CTGCAGCGGCCGC-CAGCAA 217 * ** ** * ** * *** ** ** ***** * *** * ** * * * * consensus_1242#0 CCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGA 535 consensus_1242#1 GCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGC 277 * ********* * ** *** ** ****** ** ***** ******* consensus_1242#0 GTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCG 595 consensus_1242#1 GTCCTCCAGCGACGAGCGGCTGCGGCCCTC------------GCCGGTGCAG---CCACG 322 *** ******** ****** ** ***** * *** **** * ** consensus_1242#0 GAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGA 655 consensus_1242#1 GAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGA 382 ** ***** ** ** * ******** ********************************* consensus_1242#0 GCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCA 715 consensus_1242#1 GCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCA 442 *** ********* **** *** ****** ***** ** ** ** *********** consensus_1242#0 GGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGG 775 consensus_1242#1 GGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCA- 501 ********* *** * ** * * ************************** *** ** consensus_1242#0 CAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCA 835 consensus_1242#1 ----AGCAGAAACAGCAGCAGGAGAA--CAG--GCAGGA---------ACAGCAGCAGTA 544 ***** * ** **** ** * *** ****** *** ****** * consensus_1242#0 GCAGCAGCAGTAGCCATGGGAGGAGACAAGCATTTGGTT--AATGGTTTGGTAAATCCCC 893 consensus_1242#1 GGCAGGATGCCATGTATGGGAGGAGACAAAGGTTCGATCGAAATGAGCGGGGAAGGTAGA 604 * * ************** ** * * **** ** ** consensus_1242#0 ACCTCATTATTTTTATACGCCCAAGACATGAGGAGACGGGTTAAACAACGCAACGGAAGT 953 consensus_1242#1 GCCCC------------------------------------------------------- 609 ** * consensus_1242#0 GAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTCTTCATTTGG 1013 consensus_1242#1 ------------------------------------------------------------ consensus_1242#0 CCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCTTGATTCTAG 1073 consensus_1242#1 ------------------------------------------------------------ consensus_1242#0 CCTT 1077 consensus_1242#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||