|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1077 fasta sequence
[GCCATCCAGCACTTTGCGAGGTCGCTTTCGTTTCGCCTCCTTCGTCGGCCCCGGACCGGACCGGACAGAGGCATGTCCTGATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGGGAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCGCGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCGCGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACGCCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACGACGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCGCGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTACCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGAGTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCGGAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCAGTAGCCATGGGAGGAGACAAGCATTTGGTTAATGGTTTGGTAAATCCCCACCTCATTATTTTTATACGCCCAAGACATGAGGAGACGGGTTAAACAACGCAACGGAAGTGAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTCTTCATTTGGCCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCTTGATTCTAGCCTT]
[+] EMBL AK111350 [GCCATCCAGCACTTTGCGAGGTCGCTTTCGTTTCGCCTCCTTCGTCGGCCCCGGACCGGACCGGACAGAGGCATGTCCTGATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGGGAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCGCGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCGCGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACGCCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACGACGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCGCGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTACCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGAGTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCGGAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCAGTAGCCATGGGAGGAGACAAGCATTTGGTTAATGGTTTGGTAAATCCCCACCTCATTATTTTTATACGCCCAAGACATGAGGAGACGGGTTAAACAACGCAACGGAAGTGAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTCTTCATTTGGCCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCTTGATTCTAGCCTT]
consensusID : consensus_1242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[GGCGGCCACGTCGTGGATGGTGCGGCGAGTTCATGCCGGCGTACACCGAGGAGCCGCTCGCNTGCGCGGCATGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCTTCGGGCCGCGCGGGCGCAGCACGACTGCCGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACTCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAGTAGGCAGGATGCCATGTATGGGAGGAGACAAAGGTTCGATCGAAATGAGCGGGGAAGGTAGAGCCCC]
[-] EMBL CA754243 [GGCGGCCACGTCGTGGATGGTGCGGCGAGTTCATGCCGGCGTACACCGAGGAGCCGCTCGCNTGCGCGGCATGCGGCTGCCACCGCAGCTTCCACCGCCGGGACCCTTCTTCGGGCCGCGCGGGCGCAGCACGACTGCCGCAGCTGCACCTGCCGGCGTCCATCAACTCGCGCGCACCACTCGCGCTGCTGCTGCCGCCTGCAGCGGCCGCCAGCAAGCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGCGTCCTCCAGCGACGAGCGGCTGCGGCCCTCGCCGGTGCAGCCACGGAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCAGGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCAAGCAGAAACAGCAGCAGGAGAACAGGCAGGAACAGCAGCAGTAGGCAGGATGCCATGTATGGGAGGAGACAAAGGTTCGATCGAAATGAGCGGGGAAGGTAGAGCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1242#0 GCCATCCAGCACTTTGCGAGGTCGCTTTCGTTTCGCCTCCTTCGTCGGCCCCGGACCGGA 60
consensus_1242#1 ------------------------------------------------------------
consensus_1242#0 CCGGACAGAGGCATGTCCTGATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGG 120
consensus_1242#1 ------------------------------------------------------------
consensus_1242#0 GAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCG 180
consensus_1242#1 ------------------------------------------------------------
consensus_1242#0 CGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCG 240
consensus_1242#1 ------------------------------------------------------------
consensus_1242#0 CGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACG 300
consensus_1242#1 --------GGCGGCCACGTCGTGGATGG-TGCGGCGAGTTCATGCCGGCGT------ACA 45
***************** ** *** * ************ * **
consensus_1242#0 CCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACG 360
consensus_1242#1 CCGAGGAGCCGCTCGCNTGCGCGGCATGCGGCTGCCACCGCAGCTTCCACCGCCGGGACC 105
*** ** * *** ***** ** *************************** ****
consensus_1242#0 A-----CGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCG 415
consensus_1242#1 CTTCTTCGGGCCGC-GCGGGCGCAGC-ACGACTGCCGCAGCTGCACCTGCCGGCGTC--- 160
***** ** ** * ***** ** **** * * ** *** ** *
consensus_1242#0 CGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTA 475
consensus_1242#1 CATCAACTCGCGCGCACCACTCGCGCTGCTGCTGCCGC--CTGCAGCGGCCGC-CAGCAA 217
* ** ** * ** * *** ** ** ***** * *** * ** * * * *
consensus_1242#0 CCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGA 535
consensus_1242#1 GCAAGGTTTGCCGTTCCCTGGCTACGGCACGCCCAGCGGCGGCACTGGCACCACGACCGC 277
* ********* * ** *** ** ****** ** ***** *******
consensus_1242#0 GTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCG 595
consensus_1242#1 GTCCTCCAGCGACGAGCGGCTGCGGCCCTC------------GCCGGTGCAG---CCACG 322
*** ******** ****** ** ***** * *** **** * **
consensus_1242#0 GAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGA 655
consensus_1242#1 GAGGCGGTCACGCACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGA 382
** ***** ** ** * ******** *********************************
consensus_1242#0 GCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCA 715
consensus_1242#1 GCGCGTGGGGTGGAGGATCCAGCGGCAGGAGGAGGCGACGGTGGAGCACTTCTGCGCGCA 442
*** ********* **** *** ****** ***** ** ** ** ***********
consensus_1242#0 GGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGG 775
consensus_1242#1 GGTCGGCGTCCGGAGGCAAGCGCTCAAGGTGTGGATGCACAACAACAAGCATAGCTTCA- 501
********* *** * ** * * ************************** *** **
consensus_1242#0 CAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCA 835
consensus_1242#1 ----AGCAGAAACAGCAGCAGGAGAA--CAG--GCAGGA---------ACAGCAGCAGTA 544
***** * ** **** ** * *** ****** *** ****** *
consensus_1242#0 GCAGCAGCAGTAGCCATGGGAGGAGACAAGCATTTGGTT--AATGGTTTGGTAAATCCCC 893
consensus_1242#1 GGCAGGATGCCATGTATGGGAGGAGACAAAGGTTCGATCGAAATGAGCGGGGAAGGTAGA 604
* * ************** ** * * **** ** **
consensus_1242#0 ACCTCATTATTTTTATACGCCCAAGACATGAGGAGACGGGTTAAACAACGCAACGGAAGT 953
consensus_1242#1 GCCCC------------------------------------------------------- 609
** *
consensus_1242#0 GAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTCTTCATTTGG 1013
consensus_1242#1 ------------------------------------------------------------
consensus_1242#0 CCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCTTGATTCTAG 1073
consensus_1242#1 ------------------------------------------------------------
consensus_1242#0 CCTT 1077
consensus_1242#1 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||