These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 866 fasta sequence [CCAGCGCGAGCCACATGGCGTCCACCACCACCACCACGGCGGCGGCCGCGGCCCGCTTCACCTGCCTCGCGCCGGCCACGCGCCCCGCCTCCGCCTCCGCCTCCGCGGGCCGCTTCCTCCTCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG-CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTCACCGGTTATATATATGTCCACGTATATAGTTGTAACAAAAAA] [+] EMBL CB666846 [CCAGCGCGAGCCACATGGCGTCCACCACCACCACCACGGCGGCGGCCGCGGCCCGCTTCACCTGCCTCGCGCCGGCCACGCGCCCCGCCTCCGCCTCCGCCTCCGCGGGCCGCTTCCTCCTCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAAGTTTACTTGATTAT ] [+] EMBL CB680780 [ TTCCTCCTCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGAGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACAACTTCACCGCCCAGGACATTGATGGAAAAGATGTTGCGCTTAACAAGCTCAAGGGAACGGC ] [-] EMBL CB666847 [ GCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTC ] [-] EMBL CB663116 [ TGCCCGTCGTCGCGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTTGCCTACGCCCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTC ] [-] EMBL CB680781 [ CAGGGGTCGCCTACG CCACCGCCGCCACCGGGAAGAGCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTC ] [+] EMBL BP184751 [ ACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCAAGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATTACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCATTTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTGCTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTAACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTGGAGGATTTTTGGGTGATCTTGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTTCACCATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGGGTAAAATTACT ] [-] EMBL CF299139 [ ATTCCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTCACCGGTTATATATATGTCCACGTATATAGTTGTAACAAAAAA] consensusID : consensus_12427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [AAGATGTGCCGCTTATCAAGTCAAAGGCAGGGGCGCTTCTAATTGTTAATGTTGCATCTCAGGGTGGGGTGACAACAGCAAATTACACGGAACTATCTCATCTCTCTGAGAAGTCCGACACTCAAGGGTTTAAGATTCTCGCATTTCCTTGCAATCAGTTTGGTGCACAAGAAAGTGGGTCGAACCCGCAGATTAAGCAGTTTGCTCGGACAAGGTTTAAAGCTTAATTTCCCATTTTTGACAAGGTTGAGGTCATCGGGCCTAACCCAGGCCCTATTTATAAGTTTTTTAAGTCGAGTGCTGGAGTATTTTTGGGTGATCTTGTTAAATGGAATTTTGACAAGTTCTTGGTGGACAAAACTGGAAAAGTTTTTGAAAAATACCCACCTACAAATTTGCCCTTTCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTAATAGAGGTCCCCCTTTAGCTAAGCTTTTCTGTACATAAGCCTTGCCTAAAAACAAGAGTTTTACTTGGGTAAAAAACATTTTTTTCGTGTGTAAAATAACTCATAGGTTAAATATATGGGCCCGTGTATAGTTGTAACATGAGACTTATAGGATATCAAATTTGTAGGCTTATTTGGCCCCTGTAACTGTTTTTGTTGCAGCATCCTTTTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760010 [AAGATGTGCCGCTTATCAAGTCAAAGGCAGGGGCGCTTCTAATTGTTAATGTTGCATCTCAGGGTGGGGTGACAACAGCAAATTACACGGAACTATCTCATCTCTCTGAGAAGTCCGACACTCAAGGGTTTAAGATTCTCGCATTTCCTTGCAATCAGTTTGGTGCACAAGAAAGTGGGTCGAACCCGCAGATTAAGCAGTTTGCTCGGACAAGGTTTAAAGCTTAATTTCCCATTTTTGACAAGGTTGAGGTCATCGGGCCTAACCCAGGCCCTATTTATAAGTTTTTTAAGTCGAGTGCTGGAGTATTTTTGGGTGATCTTGTTAAATGGAATTTTGACAAGTTCTTGGTGGACAAAACTGGAAAAGTTTTTGAAAAATACCCACCTACAAATTTGCCCTTTCAGATTGAGAAGGACATCCAGAAACTCCTTGCGGCATAAGTAATAGAGGTCCCCCTTTAGCTAAGCTTTTCTGTACATAAGCCTTGCCTAAAAACAAGAGTTTTACTTGGGTAAAAAACATTTTTTTCGTGTGTAAAATAACTCATAGGTTAAATATATGGGCCCGTGTATAGTTGTAACATGAGACTTATAGGATATCAAATTTGTAGGCTTATTTGGCCCCTGTAACTGTTTTTGTTGCAGCATCCTTTTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_12427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TCTTATTATTGAATCGATTCACTATTTTACTTTCGGCCAATTTTCATGCTATATTTTAGTGTCATGAAGATAGCTTTGCTAAATGTACTAATTACCTTTGAATTATTTCAAGTGCTTTCCATATAAAAGTTTATGCATTTGGTTGAGATGCACATCCCTGAACCCTCTTTTGGTTATAATATTCCAAATCACTTGTGCCGCATTATTCTGTTTAATGCATTGTGCCATTCCCCGTTGCTCACAGTCTTCTTTATATACATCTCTTGCAGRAGGACATCCAGAAACTCCTTGCGGCATAAGBACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATKAGAGTTTTACTTGATTAAAAAAATMTATATATWAT] [+] EMBL AA754320 [TCTTATTATTGAATCGATTCACTATTTTACTTTCGGCCAATTTTCATGCTATATTTTAGTGTCATGAAGATAGCTTTGCTAAATGTACTAATTACCTTTGAATTATTTCAAGTGCTTTCCATATAAAAGTTTATGCATTTGGTTGAGATGCACATCCCTGAACCCTCTTTTGGTTATAATATTCCAAATCACTTGTGCCGCATTATTCTGTTTAATGCATTGTGCCATTCCCCGTTGCTCACAGTCTTCTTTATATACATCTCTTGCAGRAGGACATCCAGAAACTCCTTGCGGCATAAGBACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATKAGAGTTTTACTTGATTAAAAAAATMTATATATWAT] consensusID : consensus_12427#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [GCCGAATTCGGCACNAGGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTNCACCATTCCAGATTGAAAAAGACATCCAGAAACTCCTTGCGGCATAAGTACTAAANGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACT] [+] EMBL AA753209 [GCCGAATTCGGCACNAGGTGAAATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATACCCACCTACAACTNCACCATTCCAGATTGAAAAAGACATCCAGAAACTCCTTGCGGCATAAGTACTAAANGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12427#0 CCAGCGCGAGCCACATGGCGTCCACCACCACCACCACGGCGGCGGCCGCGGCCCGCTTCA 60 consensus_12427#1 ------------------------------------------------------------ consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 CCTGCCTCGCGCCGGCCACGCGCCCCGCCTCCGCCTCCGCCTCCGCGGGCCGCTTCCTCC 120 consensus_12427#1 ------------------------------------------------------------ consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 TCCCGGCGCGGCAGTGGGGGGCGGCGACGACGCACGGGAGCGCGGCGGTGCCCGTCGTCG 180 consensus_12427#1 ------------------------------------------------------------ consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 CGGCGCCGTCGCGGAGGTGGGCGCCAGGGGTCGCCTACGCCACCGCCGCCACCGGGAAGA 240 consensus_12427#1 ------------------------------------------------------------ consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 GCGTCCACGACTTCACCGTCAAGGACATTGATGGAAAAGATGTTGCGCTTAGCAAGTTCA 300 consensus_12427#1 ------------------------------------AAGATGTGCCGCTTATCAAGTCAA 24 consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 AGGGAAGGGCGCTGCTAATTGTTAATGTTGCATCTCAGTGTGGGCTGACAACAGCAAATT 360 consensus_12427#1 AGGCAGGGGCGCTTCTAATTGTTAATGTTGCATCTCAGGGTGGGGTGACAACAGCAAATT 84 consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 ACACGGAACTATCTCATCTTTATGAGAAGTACAAGACTCAAGGATTTGAGATTCTTGCAT 420 consensus_12427#1 ACACGGAACTATCTCATCTCTCTGAGAAGTCCGACACTCAAGGGTTTAAGATTCTCGCAT 144 consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 TTCCTTGCAATCAGTTTGGTGCACAAGAACCTGGGTCAAACCCGCAGATTAAGCAGTTTG 480 consensus_12427#1 TTCCTTGCAATCAGTTTGGTGCACAAGAAAGTGGGTCGAACCCGCAGATTAAGCAGTTTG 204 consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 --TCTTATTATTGAATCGATTCACTA---TTTTACTTTCGGCCAATTTTCATGCTATATT 55 consensus_12427#0 CTTGTACAAGGTTTAAAGCTGAATTTCCTATTTTTGACAAGGTTGATGTCAACGGGCCTA 540 consensus_12427#1 CTCGGACAAGGTTTAAAGCTTAATTTCCCATTTTTGACAAGGTTGAGGTCATCGGGCCTA 264 consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 TTAGTGTCA----TGAAGATAGCTTTGCTAAATGTACTAA--TTACCTTTGAATTATTTC 109 consensus_12427#0 ACACAGCCCCTATTTATAAGTTTCTTAAGTCGAGTGCTG-GAGGATTTTTGGGTGATCTT 599 consensus_12427#1 ACCCAGGCCCTATTTATAAGTTTTTTAAGTCGAGTGCTG-GAGTATTTTTGGGTGATCTT 323 consensus_12427#3 -----------------------------------GCCG-AA------TTCGGC-ACNAG 17 consensus_12427#2 AAGTGCTTTCCATATAAAAGTTTATGCATTTGGTTGAGATGCACATCCCTGAACCCTCTT 169 * * consensus_12427#0 GTGAA-ATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATA 658 consensus_12427#1 GTTAA-ATGGAATTTTGACAAGTTCTTGGTGGACAAAACTGGAAAAGTTTTTGAAAAATA 382 consensus_12427#3 GTGAA-ATGGAATTTTGAGAAGTTCTTGGTGGACAAAACTGGAAAAGTTGTTGAGAGATA 76 consensus_12427#2 TTGGTTATAATATTCCAAATCACTTGTGCCGCATTATTCTGTTTAATGCATTGTGCCATT 229 * ** *** * * ** * * * *** ** *** ** consensus_12427#0 CCC----ACCTACAACTTCACCATTCCAGATTG-----AGAAGGACATCCAGAAACTCCT 709 consensus_12427#1 CCC----ACCTACAAATTTGCCCTTTCAGATTG-----AGAAGGACATCCAGAAACTCCT 433 consensus_12427#3 CCC----ACCTACAACTNCACCATTCCAGATTG-----AAAAAGACATCCAGAAACTCCT 127 consensus_12427#2 CCCCGTTGCTCACAGTCTTCTTTATATACATCTCTTGCAGRAGGACATCCAGAAACTCCT 289 *** * *** * * ** * * ***************** consensus_12427#0 TGCGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCT 769 consensus_12427#1 TGCGGCATAAGTAATAGAGGTCCCCCTTTAGCTAAGCTTTTCTGTACATAAGCCTTGCCT 493 consensus_12427#3 TGCGGCATAAGTACTAAANGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCT 187 consensus_12427#2 TGCGGCATAAGBACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCT 349 *********** * ** * *** * *** ********* *********** ********* consensus_12427#0 CATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACTCACCGG 829 consensus_12427#1 AAAAACAAGAGTTTTACTTGGGTAAAAAACATTTTTTTCGTGTGTAAAATAACTCATAGG 553 consensus_12427#3 CATAATTAGAGTTTTACTTGATTATATATCATTTTTTTCTTGTGTAAAATTACT------ 241 consensus_12427#2 CATAATKAGAGTTTTACTTGATTAAAAAA-ATMTATATATWAT----------------- 391 * ** ************* ** * * ** * * * * consensus_12427#0 TTATATATATGTCCACGTATATAGTTGTAACAAAAAA----------------------- 866 consensus_12427#1 TTAAATATATGGGCCCGTGTATAGTTGTAACATGAGACTTATAGGATATCAAATTTGTAG 613 consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 ------------------------------------------------------------ consensus_12427#1 GCTTATTTGGCCCCTGTAACTGTTTTTGTTGCAGCATCCTTTTTGTTCCAAAAAAAAAAA 673 consensus_12427#3 ------------------------------------------------------------ consensus_12427#2 ------------------------------------------------------------ consensus_12427#0 -------------------- consensus_12427#1 AAAAAAAAAAAAAAAAAAAA 693 consensus_12427#3 -------------------- consensus_12427#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||