These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1953 fasta sequence [CGCGTGGGTTTTTTTTTAAATCGGATGTAGATCGGATAAGTAATTTGAGAGAAAACTTGTTTGAAGAGGAAAGGACGTACATGTATATATTAAAAAGCATGCATGTAGTACCATGTACTAGCTAGATTTCTCCATGTTTAGACGTCGCTAGATAAGGCAAAATTGAGAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGCGCCGCTGCTACCG-GTCTTTCCTAGCGGACGCCGCCGCCACCAACCCAGAGCTCTCCTTCCACCGCCTCCCGCAACCCACGCTCCCCTGCAACGTGCCCGCTGATGATTACGTGTCTCGCTCGGGTCTTCGAGTTTGCACGGGCTTCCGGCCCCGATCTATGTGACTTCCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTCGACGTTGGCGCCGAGCTCCGCATCCCGACGTACTTCTTCCTCACCACTTGCATCGCTAGCCTCGCTTTTCTGCTGTACCTTCCAGTCATCCAAGAGGAGAATACCATGAGCTTCAGAGATCTCAGTGGTGACCTCGTGCACGCGCCGGGTATCCCACCGATACCGGCAGATCACCTCCCCATGTCTCAGTTAGACCGCGACAGCGTGAGCAGCAGGCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACTCGCACGGTGTTATGGTAAATAGCTGCCACTCCCTCGAGCGGCGCGCGGCCGACGCCATCGTCGCCGGTCTCTGCACGTTCCCAGGGCGTCGAACGCCGCCGCTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGAGGACAGTACAGAGCGCCACGAGTGCCTCGCCTGGCTTGACGCGCAGCCCAAGGCCAGCGTGTTGTTCCTCTGTTTCGGCAGCTTGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTAGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCCCCCGCCTGGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGAGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGC-GGGTTCGTGACACA-CTGTGGATGGAACTCGGTGTTGGA-GCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGA-G-CA--GAGGATGAACA-AGGTGTTCTTGGTGG-AAGAGATGCGCTTGG-CCGTGGGGGTGGAAGGCTATGACA-AAGGAATCGTTACG-GCGGAGGAGATTCA-GGAGAAGGCGAGG-TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT-T-TGGCGGCCATGCGAGAGGTGA-AAGAGGCGCCAAGTGACAAAGGTGAGTCCAA-AA-TGACG-TTGTTAGAACTCGTAAG-CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG-TTAACGGG-CTAGCCTTCTGCACCG-TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAATAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTAC] [-] EMBL BI807672 [CGCGTGGGTTTTTTTTTAAATCGGATGTAGATCGGATAAGTAATTTGAGAGAAAACTTGTTTGAAGAGGAAAGGACGTACATGTATATATTAAAAAGCATGCATGTAGTACCATGTACTAGCTAGATTTCTCCATGTTTAGACGTCGCTAGATAAGGCAAAATTGAGAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGCGCCGCTGCTACCG GTCTTTCCTAGCGGACGCCG ] [+] EMBL AK108266 [ GCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGACATCTACCCGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGCGCCGCTGCTACCGCGTCTTTCCTAGCGGACGCCGCCGCCACCAACCCAGAGCTCTCCTTCCACCGCCTCCCGCAACCCACGCTCCCCTGCAACGTGCCCGCTGATGATTACGTGTCTCGCTCGGGTCTTCGAGTTTGCACGGGCTTCCGGCCCCGATCTATGTGACTTCCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTCGACGTTGGCGCCGAGCTCCGCATCCCGACGTACTTCTTCCTCACCACTTGCATCGCTAGCCTCGCTTTTCTGCTGTACCTTCCAGTCATCCAAGAGGAGAATACCATGAGCTTCAGAGATCTCAGTGGTGACCTCGTGCACGCGCCGGGTATCCCACCGATACCGGCAGATCACCTCCCCATGTCTCAGTTAGACCGCGACAGCGTGAGCAGCAGGCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACTCGCACGGTGTTATGGTAAATAGCTGCCACTCCCTCGAGCGGCGCGCGGCCGACGCCATCGTCGCCGGTCTCTGCACGTTCCCAGGGCGTCGAACGCCGCCGCTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGAGGACAGTACAGAGCGCCACGAGTGCCTCGCCTGGCTTGACGCGCAGCCCAAGGCCAGCGTGTTGTTCCTCTGTTTCGGCAGCTTGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTAGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCCCCCGCCTGGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGAGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGC GGGTTCGTGTCACA CTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGA G CA GAGGATGAACA AGGTGTTCTTGGTGG AAGAGATGCGTTTGG CCGTGGGGGTGGAAGGCTATGACA AAGGAATCGTTACG GCGGAGGAGATTCA GGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCCAA AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTAC] [+] EMBL BI812886 [ GCTTCCTAC CC GACCAA GGAAGGGGCCTC TGTCCAATCGTTGGCACC C AC CGA GT CTGGAGCCCGTTCCGGT GGC GGTTCGTGACACA CTGTGGATGGAACTC GTTTTGGA GCCGTCACA CGGGGGTGCCCATGCTGGCAT GCC TTGTACGCGGA G CA GAGGATGAACA AGGTGTTCTTGGTGG AAGAGATGCGCTTGG CCGTGGGGGTGGAAGGCTATGACA AAGGAATCGTTACG GCGGAGGAGATTCA GGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCC A AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCC AAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAA ] [+] EMBL BQ906313 [ GCGGTGGNCGGGGTTCGTGACACACCTGTGGATGGAACTCGGTGTTGGA GCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGA G CA GAGGATGAACA AGGTGTTCTTGGTGG AAGAGATGCGCTTGGCCCGTGGGGGTGGAAGGCTATGACA AAGGAATCGTTACG GCGGAGGAGATTCA GGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCCAA AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACAC ATATTTTCAACATTTAAaaa ] [+] EMBL BI812989 [ ACGCGGACGCCACTGAGGATGAACATAGGTGTTCTTGGTGGTAAGAGATGCGCTT G CCGTGGGGGTGGAAGGCTATGACACAAGGAATCGTTACG GCGGAGGAGATTCATGGAGAAGGCGAGG TGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACT T TGGCGGCCATGCGAGAGGTGA AAGAGGCGCCAAGTGACAAAGGTGAGTCC A AA TGACG TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAA ] [+] EMBL BI812844 [ GCTT G CCGT GGGGTGGAAGGCTATGACA AAGGAATCGTTACGCGCGGAGGAGATTCA GGAGAAGGCGAGGCTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTCTCTGGCGGCCATGCGAGAGGTGACAAGAGGCGCCAAGTGAC AAGGTGAGTCCAAGAACTGACGCTTGTTAGAACTCGTAAGTCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGCTTAACGGGACTA CCTTCTGCACCGCTTTGGTCCAACATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATC ATGTTGTAGCTTAGACTAGAGGTAACAC ATATTTTCAAAAAA ] [+] EMBL BI812852 [ aATGGATTCTGACGGTGGAAGAGAGCTCCGGGA CGGACT T T GCGGCCATGCGAGAGGTGA AAGAGGC CCCAGTGAC AAGGTGAGTCC A AA TGACT TTGTTAGAACTCGTAAG CCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATG TTAACGGG CTAGCCTTCTGCACCG TTTGGTCCCAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATC ATGTTGTAGCTTAGAATAGAGGTAACACAATATTTTCAAAAAA ] consensusID : consensus_12428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1639 fasta sequence [TGAGCGCCTGAGCCGTGAGGAGAGTCAACGCAAGCTGACAAGCTTTTCCCAATTCCATGAGCGCATCAGACTGCAGCCTCTCATCACAGTCGCGGAGTCCCATCCCCTGTTCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCCGCCGCCGGGGATGATCAGCCACTTGGTCTCCACGGTGGAGCTCGGAAAGCTGCTCGCGGCGCAAGGCCTCGACATCACCATCGTCCTCGGTGGTCATGACGAAAAGGAGGCCGCTGCTACTGCTACCACGTCTTTCCTGGCGGAAGCCGCGGCCGCCAACCCGGAGCTCTCCTTCCATCGCCTCCCTCAACCCACGCTCCAATGCGACGTGCCCGCCGATGATTACGTGTCTCGGATCTTCGAGTTCGCACGCTCTTCCGGCCCTGATCTACGTGACTTTCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTGAACATCGGCGCCGAGCTCGGCATTCCGACCTACTTCTTCCTCACCACTTGCATCGCCAGCGTCGCTTTCATGCTGTACCTTCCCGTCGTCCAGGGGGAGAATACCCTGAGCTTCAGAGATCTCGGTGGTGACCTCGTGCACGCGCCGGGGATCCCGCCGATACCAGCCGACCACCTCCCCAGGTCTCAGTTCGACCGCGACAGCATGAGCAGCAATCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACGCGCACGGTGTTATGGTGAACAGCTGCCGGTCCCTCGAGCGGCGCGCCGCTGACGCCGTCGTCGCCGGCCTCTGCACATTCCCAGGGCGTCGAACGCCGCCGTTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGACGACAGCGCAGAGCGCCATGAGTGCCTCGCCTGGCTGGACGCGCAGCCCAAGGACAGCGTGTTGTTCCTCTGTTTCGGCAGCATGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTGGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCGCCCGCCTGGCTTCGAGCACGTTACCGGGCCCGACCTCGAAGCCCTCATCTTCCCGGAAGGCTTCCTTCGCCGGACCAAGGGAAGGGGGCTCGTGGTCATGTCGTGGGCACCGCAACGCGAGGTGCTGGAGCATGGTGCGGTGGGTGGGTTCGTGACACACTGTGGATGGAACTCGGTGTTAGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTATACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTGGCCGTGGCGGTGGAAGGGTATGACAAAGGGGTCGTTACAGCAGAGGAGATTCAGGAGAAGGCGAGGTGGATTATGGATTCGGACGGTGGAAGAGAGCTCCGAGAGCGGACTTTGGCAGCCATGCGGGAGGTGAAAGAGGCGTTAAGTGACAAAGGAGAGTTCAAAATAGCGTTGTTACAACTCACAAGTCAGTGGAAAAACTACAATAACTCATAAGTCAGCAGAAAAGCTTCTGAGAGAGAAGGATGGAGATATGAACAGTGGTGTTCATGGGCTAGCCTCCTCCACCATTTGATTTAAGGGAAAATTGTAACCATGCCATT] [+] EMBL AK106947 [TGAGCGCCTGAGCCGTGAGGAGAGTCAACGCAAGCTGACAAGCTTTTCCCAATTCCATGAGCGCATCAGACTGCAGCCTCTCATCACAGTCGCGGAGTCCCATCCCCTGTTCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCCGCCGCCGGGGATGATCAGCCACTTGGTCTCCACGGTGGAGCTCGGAAAGCTGCTCGCGGCGCAAGGCCTCGACATCACCATCGTCCTCGGTGGTCATGACGAAAAGGAGGCCGCTGCTACTGCTACCACGTCTTTCCTGGCGGAAGCCGCGGCCGCCAACCCGGAGCTCTCCTTCCATCGCCTCCCTCAACCCACGCTCCAATGCGACGTGCCCGCCGATGATTACGTGTCTCGGATCTTCGAGTTCGCACGCTCTTCCGGCCCTGATCTACGTGACTTTCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTGAACATCGGCGCCGAGCTCGGCATTCCGACCTACTTCTTCCTCACCACTTGCATCGCCAGCGTCGCTTTCATGCTGTACCTTCCCGTCGTCCAGGGGGAGAATACCCTGAGCTTCAGAGATCTCGGTGGTGACCTCGTGCACGCGCCGGGGATCCCGCCGATACCAGCCGACCACCTCCCCAGGTCTCAGTTCGACCGCGACAGCATGAGCAGCAATCACTTCCTCGCCTTGTCCGAACAGGTGTGCAACGCGCACGGTGTTATGGTGAACAGCTGCCGGTCCCTCGAGCGGCGCGCCGCTGACGCCGTCGTCGCCGGCCTCTGCACATTCCCAGGGCGTCGAACGCCGCCGTTGCACTGCATAGGGCCACTGATAAAGCCGCGGGAGGACGACAGCGCAGAGCGCCATGAGTGCCTCGCCTGGCTGGACGCGCAGCCCAAGGACAGCGTGTTGTTCCTCTGTTTCGGCAGCATGGGCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTGGAGACGAGCGGCCACCGGTTCCTGTGGGTGGTGCGTCGCCCGCCTGGCTTCGAGCACGTTACCGGGCCCGACCTCGAAGCCCTCATCTTCCCGGAAGGCTTCCTTCGCCGGACCAAGGGAAGGGGGCTCGTGGTCATGTCGTGGGCACCGCAACGCGAGGTGCTGGAGCATGGTGCGGTGGGTGGGTTCGTGACACACTGTGGATGGAACTCGGTGTTAGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTATACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTGGCCGTGGCGGTGGAAGGGTATGACAAAGGGGTCGTTACAGCAGAGGAGATTCAGGAGAAGGCGAGGTGGATTATGGATTCGGACGGTGGAAGAGAGCTCCGAGAGCGGACTTTGGCAGCCATGCGGGAGGTGAAAGAGGCGTTAAGTGACAAAGGAGAGTTCAAAATAGCGTTGTTACAACTCACAAGTCAGTGGAAAAACTACAATAACTCATAAGTCAGCAGAAAAGCTTCTGAGAGAGAAGGATGGAGATATGAACAGTGGTGTTCATGGGCTAGCCTCCTCCACCATTTGATTTAAGGGAAAATTGTAACCATGCCATT] consensusID : consensus_12428#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [GGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGTGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGTCACACTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGTTTGGCCGTGGGGGTGGAAGGCTATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAGGCGAGGTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCCATGCGAGAGGTGAAAGAGGCGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAACTCGTAAGCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTTAACGGGCTAGCCTTCTGCACCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTAAAAAAAAGGGA] [-] EMBL CB672082 [GGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGTGGTCATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGTCACACTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGTTTGGCCGTGGGGGTGGAAGGCTATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAGGCGAGGTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCCATGCGAGAGGTGAAAGAGGCGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAACTCGTAAGCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTTAACGGGCTAGCCTTCTGCACCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTAAAAAAAAGGGA] consensusID : consensus_12428#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TTTTTTTTTTAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGACGGATCGATGTCACCATCGTCCTCGGGGCAGGACGACGGGGGCGCCGATTGCTACCGCGTCTTCTCCTAGCGGACGCCGCCGCACCAACCCAGAGCTCTCCTTCCACCGGCTCCCGCAACCCACGCTCCCTGAAGTGCCCGCT] [-] EMBL BI812369 [TTTTTTTTTTAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGCTGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCATCGCAGTCGCGGAGTCCACGCTCTTATCCCGAAATGAGTCCGAAGAAGCTGGCTGTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAGCTGCTCGTGCCGACGGATCGATGTCACCATCGTCCTCGGGGCAGGACGACGGGGGCGCCGATTGCTACCGCGTCTTCTCCTAGCGGACGCCGCCGCACCAACCCAGAGCTCTCCTTCCACCGGCTCCCGCAACCCACGCTCCCTGAAGTGCCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 TGAGCGCCTGAGCCGTGAGGAGAGTCAACGCAAGCTGACAAGCTTTTCCCAATTCCATGA 60 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GCGCATCAGACTGCAGCCTCTCATCACAGTCGCGGAGTCCCATCCCCTGTTCCGAAATGA 120 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GTCCGAAGAAGCTGGCTGTCATCTACCCGCCGCCGGGGATGATCAGCCACTTGGTCTCCA 180 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 CGGTGGAGCTCGGAAAGCTGCTCGCGGCGCAAGGCCTCGACATCACCATCGTCCTCGGTG 240 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GTCATGACGAAAAGGAGGCCGCTGCTACTGCTACCACGTCTTTCCTGGCGGAAGCCGCGG 300 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 CCGCCAACCCGGAGCTCTCCTTCCATCGCCTCCCTCAACCCACGCTCCAATGCGACGTGC 360 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 CCGCCGATGATTACGTGTCTCGGATCTTCGAGTTCGCACGCTCTTCCGGCCCTGATCTAC 420 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GTGACTTTCTCCGGTCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCG 480 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 CCCTGAACATCGGCGCCGAGCTCGGCATTCCGACCTACTTCTTCCTCACCACTTGCATCG 540 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 CCAGCGTCGCTTTCATGCTGTACCTTCCCGTCGTCCAGGGGGAGAATACCCTGAGCTTCA 600 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GAGATCTCGGTGGTGACCTCGTGCACGCGCCGGGGATCCCGCCGATACCAGCCGACCACC 660 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 TCCCCAGGTCTCAGTTCGACCGCGACAGCATGAGCAGCAATCACTTCCTCGCCTTGTCCG 720 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 AACAGGTGTGCAACGCGCACGGTGTTATGGTGAACAGCTGCCGGTCCCTCGAGCGGCGCG 780 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 CCGCTGACGCCGTCGTCGCCGGCCTCTGCACATTCCCAGGGCGTCGAACGCCGCCGTTGC 840 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ------------------------------------------------------------ consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ACTGCATAGGGCCACTGATAAAGCCGCGGGAGGACGACAGCGCAGAGCGCCATGAGTGCC 900 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 --------------------------------CGCGTGGGTTTTTTTTTAAATCGGATGT 28 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 TCGCCTGGCTGGACGCGCAGCCCAAGGACAGCGTGTTGTTCCTCTGTTTCGGCAGCATGG 960 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 AGATCGGATAAGTAATTTGAGAGAAAACTTGTTTGAAGAGGAAAGGACGTACATGTATAT 88 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GCGTGTTCAGCGTGGAGCAGATCAAGCAGGTGGCCGTCGGCCTGGAGACGAGCGGCCACC 1020 consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ATTAAAAAGCATGCATGTAGTACCATGTACTAGCTAGATTTCTCCATGTTTAGACGTCGC 148 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GGTTCCTGTGGGTGGTGCGTCGCCCGCCTGGCTTCGAGCACGTTACCGGGCCCGACCTCG 1080 consensus_12428#2 -----------------------------GGCTTGGAGCACGTAACCGGGCCTGACCTCG 31 consensus_12428#0 TAGATAAGGCAAAATTGAGAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGC 208 consensus_12428#3 ---------TTTTTTTTTTAGGCCTCTCCAAATAGATTTTATATAAAAAAAACACTAGGC 51 consensus_12428#1 AAGCCCTCATCTTCCCGGAAGGCTTCCTTCGCCGGACC--AAGGGAAGGGGGCTCGTGGT 1138 consensus_12428#2 ACGCGCTCATCTTCCCGGAAGGCTTCCTACGCCGGACC--AAGGGAAGGGGGCTCGTGGT 89 **** ** ** * ** * * ** consensus_12428#0 TGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCAT 268 consensus_12428#3 TGAAATTAAGTGCGCTGAGCCGCTGAGTGATGGACTAGTGAGGAGACTGCAGCCTCTCAT 111 consensus_12428#1 C-ATGTCGTGGGCACCGCAACGCGAGGTGCTGGAGCATGGTGCGGTGGGTGGGTTCGTGA 1197 consensus_12428#2 C-ATATCGTGTTCACCGCAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGT 148 * * * * * * *** *** **** * * * * * * ** consensus_12428#0 CGCAGTC---GCGGAGTCCACGCTCTTATCC---CGAAATGAGTCCGAAGAAGCTGGC-T 321 consensus_12428#3 CGCAGTC---GCGGAGTCCACGCTCTTATCC---CGAAATGAGTCCGAAGAAGCTGGC-T 164 consensus_12428#1 CACACTGTGGATGGAACTCGGTGTTAGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCAT 1257 consensus_12428#2 CACACTGTGGATGGAACTCGGTGTTGGAGGCGGTCACAGCGGGGGTGCCCATGCTGGCAT 208 * ** * *** * * * * * * * * * * ****** * consensus_12428#0 GTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAG 381 consensus_12428#3 GTCATCTACCTGCCGCCGGGGATGATCGGCCACCTGGTCTCCACGGTGGAGCTCGGCAAG 224 consensus_12428#1 GGCCGTTATACGC-GGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTG 1316 consensus_12428#2 GGCCGTTGTACGC-GGAGCAGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGTTTG 267 * * * ** * * ** *** * * ** *** ** *** * * * consensus_12428#0 CTGCTCGTGCCGCACGGCATCGATGTCACCATCGTCCTCGGCGGCCAGGACGACGGGGGC 441 consensus_12428#3 CTGCTCGTGCCG-ACGG-ATCGATGTCACCATCGTCCTCG--GGGCAGGACGACGGGGGC 280 consensus_12428#1 GCCGTGGCGGTGGAAGGGTATGACAAAGGGGTCGTTACAGCAGAGGAGATTCAGGAGAAG 1376 consensus_12428#2 GCCGTGGGGGTGGAAGGCTATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAG 327 * * * * * ** ** **** * * ** * * * consensus_12428#0 GCCG-CTG--CTACCG-GTCTT-TCCTAGCGGACGCCGCCGCCACCAACCCAGAGCTCTC 496 consensus_12428#3 GCCGATTG--CTACCGCGTCTTCTCCTAGCGGACGCCGCCGC-ACCAACCCAGAGCTCTC 337 consensus_12428#1 GCGAGGTGGATTATGGATTCGGACGGTGGAAGAGAGCTCCGAGAGCGGACTTTGGCAGCC 1436 consensus_12428#2 GCGAGGTGGCTCATGGATTCTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCC 387 ** ** * * ** * * ** * *** * * * ** * consensus_12428#0 CTTCCACCGCCTCCCGCAAC-CCACGCTCCCCTGCAACGTGCCCGCTGATGATTACGTGT 555 consensus_12428#3 CTTCCACCGGCTCCCGCAAC-CCACGCTCCC---TGAAGTGCCCGCT------------- 380 consensus_12428#1 ATGCGGGAGGTGAAAGAGGCGTTAAGTGACAAAGGAGAGTTCAAAATAGCGTTGTTACAA 1496 consensus_12428#2 ATGCGAGAGGTGAAAGAGGCGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAA 447 * * * * * * * * ** * * consensus_12428#0 CTCGCTCGGGTCTTCGAGTTTGCACGGGCTTCCGGCCCCGATCTATGTGACTTCCTCCGG 615 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 CTCACAAGTCAGTGGAAAAACTAC-AATAACTCATAAGTCAGCAGAAAAGCTTCTGAGAG 1555 consensus_12428#2 CTCGTAAGCCAGTGGAAAAGTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTT 507 consensus_12428#0 TCCACCTCCCCGGCCGTCCTCATCATCGACTTCTTCTGCTACAGCGCCCTCGACGTTGGC 675 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 AGAAGGATGGAGATATGAACAGTGGTGTTCA---TGGGCTAGCC---TCCTCCACCATTT 1609 consensus_12428#2 AACGGGCTAGCCTTCTGCACCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTA 567 consensus_12428#0 GCCGAGCTCCGCATCCCGACGTACTTCTTCCTCACCACTTGCATCGCTAGCCTCGCTTTT 735 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 GATTTAAGGGAAAATTGTAACCATGCCATT------------------------------ 1639 consensus_12428#2 TATTTCCGCCAGAGTAGTAAAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGC 627 consensus_12428#0 CTGCTGTACCTTCCAGTCATCCAAGAGGAGAATACCATGAGCTTCAGAGATCTCAGTGGT 795 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 TGGATCATTTATTTTAAAAAAAAGGGA--------------------------------- 654 consensus_12428#0 GACCTCGTGCACGCGCCGGGTATCCCACCGATACCGGCAGATCACCTCCCCATGTCTCAG 855 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 TTAGACCGCGACAGCGTGAGCAGCAGGCACTTCCTCGCCTTGTCCGAACAGGTGTGCAAC 915 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 TCGCACGGTGTTATGGTAAATAGCTGCCACTCCCTCGAGCGGCGCGCGGCCGACGCCATC 975 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 GTCGCCGGTCTCTGCACGTTCCCAGGGCGTCGAACGCCGCCGCTGCACTGCATAGGGCCA 1035 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 CTGATAAAGCCGCGGGAGGAGGACAGTACAGAGCGCCACGAGTGCCTCGCCTGGCTTGAC 1095 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 GCGCAGCCCAAGGCCAGCGTGTTGTTCCTCTGTTTCGGCAGCTTGGGCGTGTTCAGCGTG 1155 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 GAGCAGATCAAGCAGGTGGCCGTCGGCCTAGAGACGAGCGGCCACCGGTTCCTGTGGGTG 1215 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 GTGCGTCCCCCGCCTGGCTTGGAGCACGTAACCGGGCCTGACCTCGACGCGCTCATCTTC 1275 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 CCGGAAGGCTTCCTACGCCGGACCAAGGGAAGGGGGCTCGAGGTCATATCGTGTTCACCG 1335 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 CAACGCGAGGTGCTGGAGCACGGTGCGGTGGGCGGGTTCGTGACACACTGTGGATGGAAC 1395 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 TCGGTGTTGGAGCGGTCACAGCGGGGGTGCCCATGCTGGCATGGCCGTTGTACGCGGAGC 1455 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 AGAGGATGAACAAGGTGTTCTTGGTGGAAGAGATGCGCTTGGCCGTGGGGGTGGAAGGCT 1515 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 ATGACAAAGGAATCGTTACGGCGGAGGAGATTCAGGAGAAGGCGAGGTGGCTCATGGATT 1575 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 CTGACGGTGGAAGAGAGCTCCGGGAGCGGACTTTGGCGGCCATGCGAGAGGTGAAAGAGG 1635 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 CGCCAAGTGACAAAGGTGAGTCCAAAATGACGTTGTTAGAACTCGTAAGCCAGTGGAAAA 1695 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 GTGACTGAAAGGAGACGGATAGGGAGATGAACAGTAATGTTAACGGGCTAGCCTTCTGCA 1755 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 CCGTTTGGTCCAAAATAAACATACCAGGTCATACTATAGTATATTTCCGCCATAGTAGTA 1815 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 AAAATCCTTGTAGAATATTTAAGTTGGAGTGAATTGCATGCTGGATCATTTATTTTTATC 1875 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 AATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAAAAAATAACCGGGTAAGCTTG 1935 consensus_12428#3 ------------------------------------------------------------ consensus_12428#1 ------------------------------------------------------------ consensus_12428#2 ------------------------------------------------------------ consensus_12428#0 CAAAAGGTTTCTGCTTAC 1953 consensus_12428#3 ------------------ consensus_12428#1 ------------------ consensus_12428#2 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||