cluster # 12429

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12429 cluster # 12429 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12429#0 length = 594 sequences # 9

consensus_12429#1 length = 432 sequences # 1

consensusID : consensus_12429#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 594
fasta sequence

                              [GGCGGCGGAGCAGATGCCCGCGGCCGGCGAGTGGCCGCGGCGGTGCCCGGGGCAGTGCGACTGCTGCTTCCCGCCATACAGCCTCATCCCCTGGCCGCACCAGCACGACGTCGCCGCCGCCGACGGCCAGCCGCAGCAGTGACGGCGGCGCCGCCGCGATTCGTAGATTAGCGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCA-ATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCA-TTTAGCTCAGCTCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACA-CTAGTAGATGGCA-AGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCAAAAATGGCAATTATTAGATGAAGTCGACACACAAAGACAGATCTCGTTTCATTTGTACATTCTACAGTCTACGTCGATGAGGACATGACTGGATTTGTATAGCAAATTAGTACTAGCAGCTAATAAGTGTGGATTAATTATGAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CB659000             [GGCGGCGGAGCAGATGCCCGCGGCCGGCGAGTGGCCGCGGCGGTGCCCGGGGCAGTGCGACTGCTGCTTCCCGCCATACAGCCTCATCCCCTGGCCGCACCAGCACGACGTCGCCGCCGCCGACGGCCAGCCGCAGCAGTGACGGCGGCGCCGCCGCGATTCGTAGATTAGCGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCA ATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCA TTTAGCTCAGCTCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACA CTAGTAGATGGCA AGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCAAAAATGGCAATTATTAGATGAAGTCGACACAC                                                                                                                                                       ]
[-] EMBL CB648618             [GGCGGCGGAGCAGATGCCCGCGGCCGGCGAGTGGCCGCGGCGGTGCCCGGGGCAGTGCGACTGCTGCTTCCCGCCATACAGCCTCATCCCCTGGCCGCACCAGCACGACGTCGCCGCCGCCGACGGCCAGCCGCAGCAGTGACGGCGGCGCCGCCGCGATTCGTAGATTAGCGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCA ATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCA TTTAGCTCAGCTCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACA CTAGTAGATGGCA AGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCAAAAATGGCAATTATTAGATGAAGTCGACACACAAAGACAGATCTCGTTTCATTTGTACATTCTACAGTCTACGTCGATGAGGACATGACTGGATTTGAAGGGCAAATTAGTA                                                                       ]
[-] EMBL CB676754             [GGCGGCGGAGCAGATGCCCGCGGCCGGCGAGTGGCCGCGGCGGTGCCCGGGGCAGTGCGACTGCTGCTTCCCGCCATACAGCCTCATCCCCTGGCCGCACCAGCACGACGTCGCCGCCGCCGACGGCCAGCCGCAGCAGTGACGGCGGCGCCGCCGCGATTCGTAGATTAGCGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCA ATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCA TTTAGCTCAGCTCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACA CTAGTAGATGGCA AGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCAAAAATGGCAATTATTAGATGAAGTCGACACA                                                                                                                                                        ]
[+] EMBL AU174501             [       GAGCAGATGCCCGCGGCCGGCGAGTGGCCGCGGCGGTGCCCGGGGCAGTGCGACTGCTGCTTCCCGCCATACAGCCTCATCCCCTGGCCGCACCAGCACGACGTCGCCGCCGCCGACGGCCAGCCGCAGCAGTGACGGCGGCGCCGCCGCGATTCGTAGATTAGCGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCA ATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCA TTTAGCTCAGCTCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACA CTAGTAGATGGCA AGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCAAAAATGGCAATTATTAGATGAAGTCGACACACAAAGACAaaaaa                                                                                                                                           ]
[+] EMBL BI810211             [                         GGTGAGTGTCCGC GC GTGTCCCGGGCAGTGCGACT CTGCTTCCCGCCATACAGCCTCAT CCCT GCCGCACCAGCACGACGTCGCC CCGCCGACGGCCAGCCGCAGCAGTGACGGCGGCGCC CCGCGATTCGTAGATTAGCGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCACATGTCGCCCAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCACTTTAGCTCAGCTCAGCTCAGCTCTGC ATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACACCTAGTAGATGGCACAGCCAATGGAAACGATCGATGATGC GTAGATGTTACTGC AAAATGGC ATTATTAGATGAAGTCGACACAC AAGACAGATCTCGTTTCATTTGTACATTCTAC GTCTACGTCGATGAGGACATGACTGGATTTGTATAGCCAATTAGTACTAGCAGCTAATAAGTGTGGATTAATTATGAAAAAA                                   ]
[+] EMBL AU173879             [                                                                                                                                   CGCAGCAGTGACGGCGGCGCCGCCGCGATTNGTAGATTAGCGAATTNGTTTGGTTGCCATGGTACACCTACACGCATGCA ATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTNGTAGTGGCA TTTAGCTCAGCTCAGCTCAGCTNTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACN CTAGTAGATGGCA AGCAAATGGAAACGATCGATGATGCAGTAGATGTTNCTGCAAAAATGGCAATTATTAGATGAAGTCGACACNCAAAGACAGATCTCGTTTCATTTGTACATTTTACAGTNTACGTCGATGAGGACATGACTGGATTTGTATAGCAAATTAGTACTAGCAGCTAATAAGTGTGGATTAATTATGAAAAAAAAAAAA                             ]
[-] EMBL CB664636             [                                                                                                                                                            CGATTCGTAGATTACCGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCA ATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCA TTTAGCTCAGCTCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGCGTGGTGAGCTTGTAAATAGAAGACCA CTAGTAGATGGCA AGCAAATGGAAACGATCGACGATGCAGTAGATGTTACTGCAAAAATGGCAATTATTAGATGAAGTCGACACACAAAGACAGATCTCGTTTCATTTGTACATTCTACAGTCTAAGTCGATGAGGAAAGGGGTGGATTTGTATAGCAAATTta                                                                         ]
[+] EMBL C99568               [                                                                                                                                                                                                                                                                                                                          TTNGCTTTAGGG NTGAGTGTGGTGNGCTTGTAAATAGAAGAACN CTAGTNGATGGCA AGCAAATGGANACGATCGATGATGCNGTAGATGTTACTGCNAAAATGGCAATTATTAGATGAAGTCGACACACAAAGACAGATCTCGTTTCATTTGTACATTCTACAGTCTACGTCGATGAGGACATGACTGGATTTGTATAGCAAATTAGTNCTAGCNGCTNATAAGTGTGGATTAATTATGAAACACGATTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU056047             [                                                                                                                                                                                                                                                                                                                                                    GCTTGTAAATAGAAGNACA CTAGTAGATGGCA AGNAAATGGNNACGATCGATGATNCAGTAGATGTTACTGCNAAAATGGCAATTATTAGATGAAGTCGACACACAAAGACAGATCTCGTTTNATTTGTACATTCTACAGTCTACGTCGATGAGGACATGACTGGATTTGTATAGCAAATTAGTANTAGCAGNTAATAAGTGTGGNTTNATTNTGAAAAAAAAAAAA                             ]




>consensus_12429#0
GGCGGCGGAGCAGATGCCCGCGGCCGGCGAGTGGCCGCGGCGGTGCCCGGGGCAGTGCGA
CTGCTGCTTCCCGCCATACAGCCTCATCCCCTGGCCGCACCAGCACGACGTCGCCGCCGC
CGACGGCCAGCCGCAGCAGTGACGGCGGCGCCGCCGCGATTCGTAGATTAGCGAATTCGT
TTGGTTGCCATGGTACACCTACACGCATGCAATGTCGCCAAATGACGCTGCGTGCTTTGC
GTTAAATTCTTTAATTATTCGTAGTGGCATTTAGCTCAGCTCAGCTCAGCTCTGCAATTA
GCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACACTA
GTAGATGGCAAGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCAAAAATGGCA
ATTATTAGATGAAGTCGACACACAAAGACAGATCTCGTTTCATTTGTACATTCTACAGTC
TACGTCGATGAGGACATGACTGGATTTGTATAGCAAATTAGTACTAGCAGCTAATAAGTG
TGGATTAATTATGAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_12429#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [TAGATTAGCGAATTCGTTTGGTTCCCCATGGGTACACCTACACGCCATCAATGGTCCCCNAATGACGCTGCGTGGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGCACTTTAGCTCAGCTCAGCTCAGCTCTNCCCATTAGCACATATTTGATTAGCTTTAGGGAATGATTGGGTGAGCTTGTGAAATAGAAGAACACCTAGTAGATGGCAAGCAAATGGAAACGATCGATGATCCGTAGATGGTTACTGCAAAAATGNCAATTATTAGATGAAGTGCGACACNCCAAGACAGATCTGCGTGTTCATTTGGTACCTNTCTGACAGTGCTACGTCGATGAGGACNTGACTGGATTTGTATACCCAATTAGTACTACCNGCTAATAAGTGTGGATTAATTATGAAACCCGATTGGTTTAATTAAAAAAAAAA]

[+] EMBL BM418628             [TAGATTAGCGAATTCGTTTGGTTCCCCATGGGTACACCTACACGCCATCAATGGTCCCCNAATGACGCTGCGTGGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGCACTTTAGCTCAGCTCAGCTCAGCTCTNCCCATTAGCACATATTTGATTAGCTTTAGGGAATGATTGGGTGAGCTTGTGAAATAGAAGAACACCTAGTAGATGGCAAGCAAATGGAAACGATCGATGATCCGTAGATGGTTACTGCAAAAATGNCAATTATTAGATGAAGTGCGACACNCCAAGACAGATCTGCGTGTTCATTTGGTACCTNTCTGACAGTGCTACGTCGATGAGGACNTGACTGGATTTGTATACCCAATTAGTACTACCNGCTAATAAGTGTGGATTAATTATGAAACCCGATTGGTTTAATTAAAAAAAAAA]




>consensus_12429#1
TAGATTAGCGAATTCGTTTGGTTCCCCATGGGTACACCTACACGCCATCAATGGTCCCCN
AATGACGCTGCGTGGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGCACTTTAGCTCAG
CTCAGCTCAGCTCTNCCCATTAGCACATATTTGATTAGCTTTAGGGAATGATTGGGTGAG
CTTGTGAAATAGAAGAACACCTAGTAGATGGCAAGCAAATGGAAACGATCGATGATCCGT
AGATGGTTACTGCAAAAATGNCAATTATTAGATGAAGTGCGACACNCCAAGACAGATCTG
CGTGTTCATTTGGTACCTNTCTGACAGTGCTACGTCGATGAGGACNTGACTGGATTTGTA
TACCCAATTAGTACTACCNGCTAATAAGTGTGGATTAATTATGAAACCCGATTGGTTTAA
TTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12429#0      GGCGGCGGAGCAGATGCCCGCGGCCGGCGAGTGGCCGCGGCGGTGCCCGGGGCAGTGCGA 60
consensus_12429#1      ------------------------------------------------------------
                                                                                   

consensus_12429#0      CTGCTGCTTCCCGCCATACAGCCTCATCCCCTGGCCGCACCAGCACGACGTCGCCGCCGC 120
consensus_12429#1      ------------------------------------------------------------
                                                                                   

consensus_12429#0      CGACGGCCAGCCGCAGCAGTGACGGCGGCGCCGCCGCGATTCGTAGATTAGCGAATTCGT 180
consensus_12429#1      -------------------------------------------TAGATTAGCGAATTCGT 17
                                                                  *****************

consensus_12429#0      TTGGTTGCC-ATGG-TACACCTACACGCATGCAATG-TCGCCAAATGACGCTGCGTG-CT 236
consensus_12429#1      TTGGTTCCCCATGGGTACACCTACACGCCATCAATGGTCCCCNAATGACGCTGCGTGGCT 77
                       ****** ** **** *************   ***** ** ** ************** **

consensus_12429#0      TTGCGTTAAATTCTTTAATTATTCGTAGTGGCATTTAGCTCAGCTCAGCTCAGCTCTGCA 296
consensus_12429#1      TTGCGTTAAATTCTTTAATTATTCGTAGTGCACTTTAGCTCAGCTCAGCTCAGCTCTNCC 137
                       ******************************   ************************ * 

consensus_12429#0      -ATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGT-AAATAGAAGA 354
consensus_12429#1      CATTAGCACATATTTGATTAGCTTTAGGGAATGATTG-GGTGAGCTTGTGAAATAGAAGA 196
                        ********************************* ** *********** **********

consensus_12429#0      ACAC-TAGTAGATGGCAAGCAAATGGAAACGATCGATGATGCAGTAGATG-TTACTGCAA 412
consensus_12429#1      ACACCTAGTAGATGGCAAGCAAATGGAAACGATCGATGATCC-GTAGATGGTTACTGCAA 255
                       **** *********************************** * ******* *********

consensus_12429#0      AAATGGCAATTATTAGATGAAGT-CGACACACAAAGACAGATCT-CGT-TTCATTTG-TA 468
consensus_12429#1      AAATGNCAATTATTAGATGAAGTGCGACACNCCAAGACAGATCTGCGTGTTCATTTGGTA 315
                       ***** ***************** ****** * *********** *** ******** **

consensus_12429#0      CATTCT--ACAGT-CTACGTCGATGAGGACATGACTGGATTTGTATAGCAAATTAGTACT 525
consensus_12429#1      CCTNTCTGACAGTGCTACGTCGATGAGGACNTGACTGGATTTGTATACCCAATTAGTACT 375
                       * *     ***** **************** **************** * **********

consensus_12429#0      AGCAGCTAATAAGTGTGGATTAATTATGAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAA 585
consensus_12429#1      ACCNGCTAATAAGTGTGGATTAATTATGAAACCCGATTGGTTTAATTAAAAAAAAAA--- 432
                       * * ***************************    *    ** **  **********   

consensus_12429#0      AAAAAAAAA 594
consensus_12429#1      ---------