cluster # 1243

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Oryza sativa
cluster # 1243 cluster # 1243 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1243#0 length = 742 sequences # 1

consensus_1243#1 length = 540 sequences # 1

consensusID : consensus_1243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [TTGCTGTGTTCTATTGCCATTAAGAAAAACTTTTTTGCACACCGCGTTCAGAGTAAGAAGGTATTAAGTATTGCCAGTGGTTGATTAAGACTATTAGATTGAACTGAATATATTTATGTCTCTACTAAGGGATATTGTGTACTACCTCCGTCCCAAAATAATTGTATTTCTATGATTCAAACTTTGTCCCAAAATAATTGTAATTCTAGAGTACTAATTGCTCCATCAATCATCTCTCATTCAAATTTCTTCCTATTATATCCTCAACCATCTTCCCACTCACATAAACACCATTTAATGAGGGGCATCATTGTCTTTTTTCTCAAACCTTAATATATGCTAAACAATATAGAATTACAATTATTTTGGGACGGAGGTAGTATAGTTTATGCATGCTTTCAGTTTTTAAACATTGTCAGTGGTTTATGACTGTTAGATTGAATATATTTCTCTCTATCACACTATTATGTTCAGATTTTTTTAAAAAATATCCAGGTAATTACTGCCAATACCATCTTGTTAATAATGAATTAATTATGCAATATCATCTTGGTAAATAAGTTGTATTTCTTGCTCCTGCTACATGCATTTAATACGACAGTTTATGCAAATTACAATTGCTCCTAAAGTTATGAAAAAAAAACAAATCTAATTGTTAAAGGCTAAAGAATTACCTTCTGTAAATGCCGTAAACGCAGATGTATCACGTCCAACAGGAAATTGCTCGTTNTTTCAAAAAAAA]

[+] EMBL CA758157             [TTGCTGTGTTCTATTGCCATTAAGAAAAACTTTTTTGCACACCGCGTTCAGAGTAAGAAGGTATTAAGTATTGCCAGTGGTTGATTAAGACTATTAGATTGAACTGAATATATTTATGTCTCTACTAAGGGATATTGTGTACTACCTCCGTCCCAAAATAATTGTATTTCTATGATTCAAACTTTGTCCCAAAATAATTGTAATTCTAGAGTACTAATTGCTCCATCAATCATCTCTCATTCAAATTTCTTCCTATTATATCCTCAACCATCTTCCCACTCACATAAACACCATTTAATGAGGGGCATCATTGTCTTTTTTCTCAAACCTTAATATATGCTAAACAATATAGAATTACAATTATTTTGGGACGGAGGTAGTATAGTTTATGCATGCTTTCAGTTTTTAAACATTGTCAGTGGTTTATGACTGTTAGATTGAATATATTTCTCTCTATCACACTATTATGTTCAGATTTTTTTAAAAAATATCCAGGTAATTACTGCCAATACCATCTTGTTAATAATGAATTAATTATGCAATATCATCTTGGTAAATAAGTTGTATTTCTTGCTCCTGCTACATGCATTTAATACGACAGTTTATGCAAATTACAATTGCTCCTAAAGTTATGAAAAAAAAACAAATCTAATTGTTAAAGGCTAAAGAATTACCTTCTGTAAATGCCGTAAACGCAGATGTATCACGTCCAACAGGAAATTGCTCGTTNTTTCAAAAAAAA]




>consensus_1243#0
TTGCTGTGTTCTATTGCCATTAAGAAAAACTTTTTTGCACACCGCGTTCAGAGTAAGAAG
GTATTAAGTATTGCCAGTGGTTGATTAAGACTATTAGATTGAACTGAATATATTTATGTC
TCTACTAAGGGATATTGTGTACTACCTCCGTCCCAAAATAATTGTATTTCTATGATTCAA
ACTTTGTCCCAAAATAATTGTAATTCTAGAGTACTAATTGCTCCATCAATCATCTCTCAT
TCAAATTTCTTCCTATTATATCCTCAACCATCTTCCCACTCACATAAACACCATTTAATG
AGGGGCATCATTGTCTTTTTTCTCAAACCTTAATATATGCTAAACAATATAGAATTACAA
TTATTTTGGGACGGAGGTAGTATAGTTTATGCATGCTTTCAGTTTTTAAACATTGTCAGT
GGTTTATGACTGTTAGATTGAATATATTTCTCTCTATCACACTATTATGTTCAGATTTTT
TTAAAAAATATCCAGGTAATTACTGCCAATACCATCTTGTTAATAATGAATTAATTATGC
AATATCATCTTGGTAAATAAGTTGTATTTCTTGCTCCTGCTACATGCATTTAATACGACA
GTTTATGCAAATTACAATTGCTCCTAAAGTTATGAAAAAAAAACAAATCTAATTGTTAAA
GGCTAAAGAATTACCTTCTGTAAATGCCGTAAACGCAGATGTATCACGTCCAACAGGAAA
TTGCTCGTTNTTTCAAAAAAAA

consensusID : consensus_1243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [TTTAGTTTACACAACTTTTTAAATCGTGTAGAATTTGCAACCTTAACACTCTTAATATCTAAATACCTTACGACATGTTAAGCCAGATGGCGCATAAAGTGTCATAGCCCAATGTCTTAGCATGATTTCTGACCATGGGATTACTGTAGCACCACATACATTATTACTACCTCCGTCCCATAATAATTTTATTTCTAGGATTCAAATTTGTTCCAAAATAGTTGTCACAATAGAGTACTAATTGTCCCATCAATCACTTCTTATTCAAATTTCTTCCTATTCTACCCTCAACCACCCTCCCGCTCTTGCATATACACCATTTAATGAGGGACACCATAGTCTTTCTCCTCAAACCTTAATATATGCTAAACAACTTAGAATTACAATTATTTTGGGACAGAGGTACTACATTTCATGCAGTTACTTTAACACCACGAGGACTACTCGACTTTAGAGATAAGATTATATTGGTCAATACCATCTCTTTCCGTAATATTGGAGATAAGTTTCTCATGTCTCTTTTCACAAAGATGGGACCAT]

[+] EMBL CF305046             [TTTAGTTTACACAACTTTTTAAATCGTGTAGAATTTGCAACCTTAACACTCTTAATATCTAAATACCTTACGACATGTTAAGCCAGATGGCGCATAAAGTGTCATAGCCCAATGTCTTAGCATGATTTCTGACCATGGGATTACTGTAGCACCACATACATTATTACTACCTCCGTCCCATAATAATTTTATTTCTAGGATTCAAATTTGTTCCAAAATAGTTGTCACAATAGAGTACTAATTGTCCCATCAATCACTTCTTATTCAAATTTCTTCCTATTCTACCCTCAACCACCCTCCCGCTCTTGCATATACACCATTTAATGAGGGACACCATAGTCTTTCTCCTCAAACCTTAATATATGCTAAACAACTTAGAATTACAATTATTTTGGGACAGAGGTACTACATTTCATGCAGTTACTTTAACACCACGAGGACTACTCGACTTTAGAGATAAGATTATATTGGTCAATACCATCTCTTTCCGTAATATTGGAGATAAGTTTCTCATGTCTCTTTTCACAAAGATGGGACCAT]




>consensus_1243#1
TTTAGTTTACACAACTTTTTAAATCGTGTAGAATTTGCAACCTTAACACTCTTAATATCT
AAATACCTTACGACATGTTAAGCCAGATGGCGCATAAAGTGTCATAGCCCAATGTCTTAG
CATGATTTCTGACCATGGGATTACTGTAGCACCACATACATTATTACTACCTCCGTCCCA
TAATAATTTTATTTCTAGGATTCAAATTTGTTCCAAAATAGTTGTCACAATAGAGTACTA
ATTGTCCCATCAATCACTTCTTATTCAAATTTCTTCCTATTCTACCCTCAACCACCCTCC
CGCTCTTGCATATACACCATTTAATGAGGGACACCATAGTCTTTCTCCTCAAACCTTAAT
ATATGCTAAACAACTTAGAATTACAATTATTTTGGGACAGAGGTACTACATTTCATGCAG
TTACTTTAACACCACGAGGACTACTCGACTTTAGAGATAAGATTATATTGGTCAATACCA
TCTCTTTCCGTAATATTGGAGATAAGTTTCTCATGTCTCTTTTCACAAAGATGGGACCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1243#0      -TTGCTGTGTTCTATTGCC---ATTAAGAAAAACTTTTTTGCACACCGCGTTCAGAGTAA 56
consensus_1243#1      TTTAGTTTACACAACTTTTTAAATCGTGTAGAATTTGCAACCTTAACACTCTTAATATCT 60
                       **  * *   * * *      **   * * ** **     *  * * *  * *   *  

consensus_1243#0      GAAGGTATTAAG---TATT--GCCAG-TGGTTGATTAAGACTATTAGATTGAA--CTGAA 108
consensus_1243#1      AAATACCTTACGACATGTTAAGCCAGATGGCGCATAAAGTGTCATAGCCCAATGTCTTAG 120
                       **    *** *   * **  ***** ***   ** ***  *  ***    *   ** * 

consensus_1243#0      TAT-ATTTATGTCT------CTACTAAGGGATATTGTG------TACTACCTCCGTCCCA 155
consensus_1243#1      CATGATTTCTGACCATGGGATTACTGTAGCACCACATACATTATTACTACCTCCGTCCCA 180
                       ** **** ** *        ****   * *     *       ****************

consensus_1243#0      AAATAATTGTATTTCTATGATTCAAACTTTGTCCCAAAATAATTGTAATTCTAGAGTACT 215
consensus_1243#1      TAATAATTTTATTTCTAGGATTCAAA-TTTGTTCCAAAATAGTTGTCACAATAGAGTACT 239
                       ******* ******** ******** ***** ******** **** *   *********

consensus_1243#0      AATTGCTCCATCAATCATCTCTCATTCAAATTTCTTCCTATTATATCCTCAACCATCTTC 275
consensus_1243#1      AATTGTCCCATCAATCACTTCTTATTCAAATTTCTTCCTATTCTACCCTCAACCACCCTC 299
                      *****  **********  *** ******************* ** ********* * **

consensus_1243#0      CCACTC--ACATAAACACCATTTAATGAGGGGCATCATTGTCTTTTTTCTCAAACCTTAA 333
consensus_1243#1      CCGCTCTTGCATATACACCATTTAATGAGGGACACCATAGTCTTTCTCCTCAAACCTTAA 359
                      ** ***   **** ***************** ** *** ****** * ************

consensus_1243#0      TATATGCTAAACAATATAGAATTACAATTATTTTGGGACGGAGGTAGTATAGTTTATGCA 393
consensus_1243#1      TATATGCTAAACAACTTAGAATTACAATTATTTTGGGACAGAGGTACTACATTTCATGCA 419
                      **************  *********************** ****** ** * ** *****

consensus_1243#0      TGCTTTCAGTTTTTAAACATTGTCAGTGGTTTATGACTGTTAGATTGAATATATTTCTCT 453
consensus_1243#1      -------GTTACTTTAACACCACGAGGACTACTCGACTTTAGAGATAAGATTATATTGGT 472
                               *  ** ****     **   *    **** *     * *   *** *   *

consensus_1243#0      CTATCACACTATTATGTTCAGATTTTTTTAAAAAATATCCAGGTAATTACTGCCAATACC 513
consensus_1243#1      CAAT---ACCATC---------TCTTTCCGTAATAT-TGGAGATAAGT-TTCTCATGTCT 518
                      * **   ** **          * ***    ** ** *  ** *** *  *  **   * 

consensus_1243#0      ATCTTGTTAATAATGAATTAATTATGCAATATCATCTTGGTAAATAAGTTGTATTTCTTG 573
consensus_1243#1      CTTTTCACAAAGATGGGACCAT-------------------------------------- 540
                       * **   **  ***     **                                      

consensus_1243#0      CTCCTGCTACATGCATTTAATACGACAGTTTATGCAAATTACAATTGCTCCTAAAGTTAT 633
consensus_1243#1      ------------------------------------------------------------
                                                                                  

consensus_1243#0      GAAAAAAAAACAAATCTAATTGTTAAAGGCTAAAGAATTACCTTCTGTAAATGCCGTAAA 693
consensus_1243#1      ------------------------------------------------------------
                                                                                  

consensus_1243#0      CGCAGATGTATCACGTCCAACAGGAAATTGCTCGTTNTTTCAAAAAAAA 742
consensus_1243#1      -------------------------------------------------