cluster # 12430

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Oryza sativa
cluster # 12430 cluster # 12430 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12430#0 length = 2559 sequences # 9

consensus_12430#1 length = 410 sequences # 1

consensusID : consensus_12430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2559
fasta sequence

                              [CCTCATTATTCCTCCTCTTCCCCCCTCGCCGCTTACAACATCCATCCCCAAACCCGCATTCAAAACAAGCAACCCTCCTCCCGAATCGAACAAGGAAACAGATATCGCCTCTAAAACCCCCATCGTCTCGTCTCGTCTCGTTCCCCTCTCCATCTTCCGCGGCTTTCCGCGCGATCCACCGATCCGGTTTCCCCGCGCCGTGCCCGGAGTCGGCGCTCCATTCCCGCGCCGGGTTTTGGGGTGGTGTGTTGATGCGGCGGGATTCGAGCCCTGGCCTGTGAGTTGGGCGTCGGCTCGGCGGCTGCGGGGTCGGCGCGGG-CGCGGACGCGGCGGATGTCTGCTATGAGGCGGCGGCCGGTGCTGCCGACTCACCAGGACGACATGGAGAAGGTGGG-CGGGAAGCCGCCGCAGTCGCGCCTCTGCTTCCTCGCCACGCTCTGCGCCATGTTCTGGGTCCTCATCTTCTACTTCCACTTCTTCGTCATCGCCAACGAGCCTGGCTCCGCGGGGGCGGACACCGCCGCCGGCGCCGCGGCGAGCATTGCCCGCGCAGAACTTCCGCTCCCCGAACCCGAGCGCGTCTCCGATCCCGCGGTTCCCCTCCCTCCGCCTGCCCTCGTCTCGGAGCCGCCACCTACCACCGCTACTGTCGCCAAAGTGGAAGATGAGGAGAAGCCCACGGCCGTCGCCCACCAGGAGGCGGCGCCCAGGGATTACGCGTTCCAGCGAGCGCTCAAGACCGCGGAGAACAAGAGCGACCCGTGCGGCGGCCGGTACATCTACGTGCACGAGCTGCCGCCGCGGTTCAACGACGACATGCTCCGGGAGTGCGAGAGGCTCAGCCTCTGGACCAATATGTGCAAGTTCATGAGCAACGAAGGGCTTGGTCCGCCGTTGGGCAACGAGGAAGGGGTGTTCTCCAACACCGGCTGGTACGCGACGAACCAGTTTATGGTGGATGTCATCTTCAGGAACCGGATGAAGCAGTACGAGTGCCTGACCAAGGACTCGTCCATCGCTGCCGCGGTGTTTGTGCCGTTCTACGCCGGGTTTGATGTGGCGAGGTATCTTTGGGGGCACAACATTTCGACGAGGGATGCCGCGTCGCTGGATTTGATAGATTGGCTGAGGAAGAGGCCTGAATGGAATGTGATGGGCGGGCGTGACCATTTCTTAGTTGGCGGCAGGATTGCGTGGGATTTCAGGCGCTTGACGGACGAAGAGTCGGATTGGGGCAACAAGCTGCTTTTCATGCCGGCTGCGAAGAATATGTCGATGTTGGTGGTGGAGTCAAGCCCATGGAATGCCAATGATTTTGCGATACCATATCCTACTTACTTCCACCCTGCCAAGGATGCTGATGTTTTGCTTTGGCAGGATAGAATGAGGAGCCTGGAACGACCATGGTTGTTCTCGTTTGCTGGGGCTCCTCGTCCTGATGATCCCAAGTCTATCAGAAGTCAGCTTATTGATCAATGCAGGACATCAAGTGTCTGTAAATTGCTGGAGTGTGATCTTGGGGAGAGCAAGTGCCATTCCCCTAGCGCAATCATGAATATGTTCCAGAACTCTTTGTTCTGCTTGCAGCCCCAAGGTGATTCGTATACGAGAAGATCTGCCTTCGACTCGATGCTGGCTGGTTGCATTCCTGTTTTCTTTCATCCTGGTTCAGCGTATGTCCAATATACGTGGCATCTTCCGAAGAACTATACACGGTACTCTGTCTTCATCCCTGAAGATGGCGTCCGTAAGGGAAATGTCAGCATTGAGGACAGGCTTAAAAGTATCCAT-CCAGATATGGT-CAAGAAGATGAGGGAAGAGGT-CATTAGTCTCATCCCAAGGGTGATATATGCTGATCCAAGGTCAAAGCTGGAGACCCTGAAGGATGCATTCGATGTTTCTGTAGAGGCAATAATTAACAAGGTGACACAGTTGAGAAGAGATATCATCGAAGATCATGAAGATAAAGATTTTGTTGAAGAGAATAGCTGGAAGTATGATCTGTTGGAAGAAGGGCAGAGGACAATTGGGCCTCATGAATGGGACCCGTTCTTCTCTAAGCCCAAGGACAAGGGTGGAGATTCTACTAATCCATCTACTAATGCTGCCAAGAACTCCTGGAAAAACGAACAAAGAGGTCAGAACTAAAATACAGGTAGTTAGATATG-TGATCGAGGAAAGGAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATACCTTGCCCATATGTCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGTTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATACTCACAATTAGTAAGCAATCAAAGAGATTTTTGTAGATAA]

[+] EMBL AK103041             [CCTCATTATTCCTCCTCTTCCCCCCTCGCCGCTTACAACATCCATCCCCAAACCCGCATTCAAAACAAGCAACCCTCCTCCCGAATCGAACAAGGAAACAGATATCGCCTCTAAAACCCCCATCGTCTCGTCTCGTCTCGTTCCCCTCTCCATCTTCCGCGGCTTTCCGCGCGATCCACCGATCCGGTTTCCCCGCGCCGTGCCCGGAGTCGGCGCTCCATTCCCGCGCCGGGTTTTGGGGTGGTGTGTTGATGCGGCGGGATTCGAGCCCTGGCCTGTGAGTTGGGCGTCGGCTCGGCGGCTGCGGGGTCGGCGCGGG CGCGGACGCGGCGGATGTCTGCTATGAGGCGGCGGCCGGTGCTGCCGACTCACCAGGACGACATGGAGAAGGTGGG CGGGAAGCCGCCGCAGTCGCGCCTCTGCTTCCTCGCCACGCTCTGCGCCATGTTCTGGGTCCTCATCTTCTACTTCCACTTCTTCGTCATCGCCAACGAGCCTGGCTCCGCGGGGGCGGACACCGCCGCCGGCGCCGCGGCGAGCATTGCCCGCGCAGAACTTCCGCTCCCCGAACCCGAGCGCGTCTCCGATCCCGCGGTTCCCCTCCCTCCGCCTGCCCTCGTCTCGGAGCCGCCACCTACCACCGCTACTGTCGCCAAAGTGGAAGATGAGGAGAAGCCCACGGCCGTCGCCCACCAGGAGGCGGCGCCCAGGGATTACGCGTTCCAGCGAGCGCTCAAGACCGCGGAGAACAAGAGCGACCCGTGCGGCGGCCGGTACATCTACGTGCACGAGCTGCCGCCGCGGTTCAACGACGACATGCTCCGGGAGTGCGAGAGGCTCAGCCTCTGGACCAATATGTGCAAGTTCATGAGCAACGAAGGGCTTGGTCCGCCGTTGGGCAACGAGGAAGGGGTGTTCTCCAACACCGGCTGGTACGCGACGAACCAGTTTATGGTGGATGTCATCTTCAGGAACCGGATGAAGCAGTACGAGTGCCTGACCAAGGACTCGTCCATCGCTGCCGCGGTGTTTGTGCCGTTCTACGCCGGGTTTGATGTGGCGAGGTATCTTTGGGGGCACAACATTTCGACGAGGGATGCCGCGTCGCTGGATTTGATAGATTGGCTGAGGAAGAGGCCTGAATGGAATGTGATGGGCGGGCGTGACCATTTCTTAGTTGGCGGCAGGATTGCGTGGGATTTCAGGCGCTTGACGGACGAAGAGTCGGATTGGGGCAACAAGCTGCTTTTCATGCCGGCTGCGAAGAATATGTCGATGTTGGTGGTGGAGTCAAGCCCATGGAATGCCAATGATTTTGCGATACCATATCCTACTTACTTCCACCCTGCCAAGGATGCTGATGTTTTGCTTTGGCAGGATAGAATGAGGAGCCTGGAACGACCATGGTTGTTCTCGTTTGCTGGGGCTCCTCGTCCTGATGATCCCAAGTCTATCAGAAGTCAGCTTATTGATCAATGCAGGACATCAAGTGTCTGTAAATTGCTGGAGTGTGATCTTGGGGAGAGCAAGTGCCATTCCCCTAGCGCAATCATGAATATGTTCCAGAACTCTTTGTTCTGCTTGCAGCCCCAAGGTGATTCGTATACGAGAAGATCTGCCTTCGACTCGATGCTGGCTGGTTGCATTCCTGTTTTCTTTCATCCTGGTTCAGCGTATGTCCAATATACGTGGCATCTTCCGAAGAACTATACACGGTACTCTGTCTTCATCCCTGAAGATGGCGTCCGTAAGGGAAATGTCAGCATTGAGGACAGGCTTAAAAGTATCCAT CCAGATATGGT CAGGAAGATGAGGGAAGAGGT CATTAGTCTCATCCCAAGGGTGATATATGCTGATCCAAGGTCAAAGCTGGAGACCCTGAAGGATGCATTCGATGTTTCTGTAGAGGCAATAATTAACAAGGTGACACAGTTGAGAAGAGATATCATCGAAGATCATGAAGATAAAGATTTTGTTGAAGAGAATAGCTGGAAGTATGATCTGTTGGAAGAAGGGCAGAGGACAATTGGGCCTCATGAATGGGACCCGTTCTTCTCTAAGCCCAAGGACAAGGGTGGAGATTCTACTAATCCATCTACTAATGCTGCCAAGAACTCCTGGAAAAACGAACAAAGAGGTCAGAACTAAAATACAGGTAGTTAGATATG TGATCGAGGAAAGGAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATACCTTGCCCATATGTCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGTTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATACTCACAATTAGTAAGCAATCAAAG                ]
[+] EMBL AU100968             [                                                         ATTCAAAACAAGCAACCCTCCTCCCGAATCGAACAAGGAAACAGATATCGCCTCTAAAACCCCCATCGTCTCGTCTCGTCTCGTTCCCCTCTCCATCTTCCGCGGCTTTCCGCGCGATCCACCGATCCGGTTTCCCCGCGCCGTGCCCGGAGTCGGCGCTCCATTCCCGCGCCGGGTTTTGGGGTGGTGTGTTGATGCGGCGGGATTCGAGCCCTGGCCTGTGAGTTGGGCGTCGGCTCGGCGGCTGCGGGGTCGGCGCGGGCCGCGGACGCGGCGGATGTCTGCTATGAAGCGGCGGCCGGTGCTGCCGACTNACCAGGACGACATGGAGAAAGTGGGCCGGAAAGCCGCCGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU161329             [                                                         ATTCAAAACAAGCAACCCTCCTCCCGAATCGAACAAGGAAACAGATATCGCCTCTAAAACCCCCATCGTCTCGTCTCGTCTCGTTCCCCTCTCCATCTTCCGCGGCTTTCCGCGCGATCCACCGATCCGGTTTCCCCGCGCCGTGCCCGGAGTCGGCGCTCCATTCCCGCGCCGGGTTTTGGGGTGGTGTGTTGATGCGGCGGGATTCGAGCCCTGGCCTGTGAGTTGGGCGTCGGCTCGGCGGCTGCGGGGTCGGCGCGGG CGCGGACGCGGCGGATGTCTGCTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C72409               [                                                               AACAAGCAACCCTCCTCCCGAATCGAACAAGGAAACAGATATCGCCTCTAAAACCCCCATCGTCTCGTCTCGTCTCGTTCCCCTCTCCATCTTCCGCGGCTTTCCGCGCGATCCACCGATCCGGTTTCCCCGCGCCGTGCCCGGAGTCGGCGCTCCATTCCCGCGCCGACTTTTGGGGTGGTGTGTTGATGCGGCGGGATTCGAGCCCTGGCCTGTGAGTTGGGCGTCGGCTCGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSR22471A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTCCGAAGAACTATACACGGTACTCTGTCTTCATCCCTGAAGATGGCGTCCGTAAGGGAAATGTCAGCATTGAGGACAGGCTTAAAAGTATCCAT CCAGATATGGT CAAGAAGATGAGGGAAGAGGT CATTAGTCTCATCCCAAGGGTGATATATGCTGATCCAAGGTCAAAGCTGGAGACCCTGAAGGATGCATTCGATGTTTCTGTAGAGGCAATAATTAACAAGGTGACACAGTTGAGAAGAGATATCATCGAAGATCATGAAGATAAAGATTTTGTTGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU100969             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCATCCCAGATATGGT CAAGAAGATGAGGAAAGAGGT CATTAGTCTCATCCCAAGGGTGATATATGCTGATCCAAGGTCAAAGCTGGAGACCNTGAAGGATGCATTCGATGTTTCTGTAGAGGCAATAATTANCAAGGTGACACAGTTGAGAAGAGATATCATCGAAGATCATGAAGATAAAGATTTTGTTGAAGAGAATAGCTGGAAGTATGATCTGTTGGAAGAAGGGCAGAGGACAATTGGGCCTCATGAATGGGACCCGTTCTTCTCTAAGCCCAAGGACAAGGGTGGAGATTCTACTAATCCATCTACTAATGCTGCCAAGAACTCCTGGAAAAACGAACAAAGAGGTCAGAACTAAAATACAGGTAGTTAGATATG TGATCGAGGAAAGGAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATACCTTGCCCATATGTCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGTTTaaaaaaa                                                                                          ]
[+] EMBL AU161330             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AT CCAGATATGGTCCAAGAAGATGAGGAAAGAGGTCCATTAGTCTCATCCCAAGGGTGATATATGCTGATCCAAGGTCAAAGCTGGAGACCNTGAAGGATGCATTCGATGTTTCTGTAGAGGCAATAATTAACAAGGTGACACAGTTGAGAAGAGATATCATCGAAGATCATGAAGATAAAGATTTTGTTGAAGAGAATAGCTGGAAGTATGATCTGTTGGAAGAAGGGCAGAGGACAATTGGGCCTCATGAATGGGACCCGTTCTTCTCTAAGCCCAAGGACAAGGGTGGAGATTCTACTAATCCATCTACTAATGCTGCCAAGAACTCCTGGAAAAACGAACAAAGAGGTCAGAACTAAAATACAGGTAGTTAGATATG TGATCGAGGAAAGGAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATACCTTGCCCATATGTCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGTTTaaaaaaa                                                                                          ]
[+] EMBL BI797334             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGTAGTTAGATATGTTGATCGAGGAAAGGAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATACTGTGCCCATATGTCAAAGATCCTCCAACGTAGTAGCTCTGATGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACTGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTC                                                                                                                                                                                     ]
[+] EMBL AU165490             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGTAAGT CTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGTTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATACTCACAATTAGTAAGCAATCAAAGAGATTTTTGTAGATAA]




>consensus_12430#0
CCTCATTATTCCTCCTCTTCCCCCCTCGCCGCTTACAACATCCATCCCCAAACCCGCATT
CAAAACAAGCAACCCTCCTCCCGAATCGAACAAGGAAACAGATATCGCCTCTAAAACCCC
CATCGTCTCGTCTCGTCTCGTTCCCCTCTCCATCTTCCGCGGCTTTCCGCGCGATCCACC
GATCCGGTTTCCCCGCGCCGTGCCCGGAGTCGGCGCTCCATTCCCGCGCCGGGTTTTGGG
GTGGTGTGTTGATGCGGCGGGATTCGAGCCCTGGCCTGTGAGTTGGGCGTCGGCTCGGCG
GCTGCGGGGTCGGCGCGGGCGCGGACGCGGCGGATGTCTGCTATGAGGCGGCGGCCGGTG
CTGCCGACTCACCAGGACGACATGGAGAAGGTGGGCGGGAAGCCGCCGCAGTCGCGCCTC
TGCTTCCTCGCCACGCTCTGCGCCATGTTCTGGGTCCTCATCTTCTACTTCCACTTCTTC
GTCATCGCCAACGAGCCTGGCTCCGCGGGGGCGGACACCGCCGCCGGCGCCGCGGCGAGC
ATTGCCCGCGCAGAACTTCCGCTCCCCGAACCCGAGCGCGTCTCCGATCCCGCGGTTCCC
CTCCCTCCGCCTGCCCTCGTCTCGGAGCCGCCACCTACCACCGCTACTGTCGCCAAAGTG
GAAGATGAGGAGAAGCCCACGGCCGTCGCCCACCAGGAGGCGGCGCCCAGGGATTACGCG
TTCCAGCGAGCGCTCAAGACCGCGGAGAACAAGAGCGACCCGTGCGGCGGCCGGTACATC
TACGTGCACGAGCTGCCGCCGCGGTTCAACGACGACATGCTCCGGGAGTGCGAGAGGCTC
AGCCTCTGGACCAATATGTGCAAGTTCATGAGCAACGAAGGGCTTGGTCCGCCGTTGGGC
AACGAGGAAGGGGTGTTCTCCAACACCGGCTGGTACGCGACGAACCAGTTTATGGTGGAT
GTCATCTTCAGGAACCGGATGAAGCAGTACGAGTGCCTGACCAAGGACTCGTCCATCGCT
GCCGCGGTGTTTGTGCCGTTCTACGCCGGGTTTGATGTGGCGAGGTATCTTTGGGGGCAC
AACATTTCGACGAGGGATGCCGCGTCGCTGGATTTGATAGATTGGCTGAGGAAGAGGCCT
GAATGGAATGTGATGGGCGGGCGTGACCATTTCTTAGTTGGCGGCAGGATTGCGTGGGAT
TTCAGGCGCTTGACGGACGAAGAGTCGGATTGGGGCAACAAGCTGCTTTTCATGCCGGCT
GCGAAGAATATGTCGATGTTGGTGGTGGAGTCAAGCCCATGGAATGCCAATGATTTTGCG
ATACCATATCCTACTTACTTCCACCCTGCCAAGGATGCTGATGTTTTGCTTTGGCAGGAT
AGAATGAGGAGCCTGGAACGACCATGGTTGTTCTCGTTTGCTGGGGCTCCTCGTCCTGAT
GATCCCAAGTCTATCAGAAGTCAGCTTATTGATCAATGCAGGACATCAAGTGTCTGTAAA
TTGCTGGAGTGTGATCTTGGGGAGAGCAAGTGCCATTCCCCTAGCGCAATCATGAATATG
TTCCAGAACTCTTTGTTCTGCTTGCAGCCCCAAGGTGATTCGTATACGAGAAGATCTGCC
TTCGACTCGATGCTGGCTGGTTGCATTCCTGTTTTCTTTCATCCTGGTTCAGCGTATGTC
CAATATACGTGGCATCTTCCGAAGAACTATACACGGTACTCTGTCTTCATCCCTGAAGAT
GGCGTCCGTAAGGGAAATGTCAGCATTGAGGACAGGCTTAAAAGTATCCATCCAGATATG
GTCAAGAAGATGAGGGAAGAGGTCATTAGTCTCATCCCAAGGGTGATATATGCTGATCCA
AGGTCAAAGCTGGAGACCCTGAAGGATGCATTCGATGTTTCTGTAGAGGCAATAATTAAC
AAGGTGACACAGTTGAGAAGAGATATCATCGAAGATCATGAAGATAAAGATTTTGTTGAA
GAGAATAGCTGGAAGTATGATCTGTTGGAAGAAGGGCAGAGGACAATTGGGCCTCATGAA
TGGGACCCGTTCTTCTCTAAGCCCAAGGACAAGGGTGGAGATTCTACTAATCCATCTACT
AATGCTGCCAAGAACTCCTGGAAAAACGAACAAAGAGGTCAGAACTAAAATACAGGTAGT
TAGATATGTGATCGAGGAAAGGAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATAC
CTTGCCCATATGTCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTGA
TGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCAC
GGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCA
ATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGT
TTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATAC
TCACAATTAGTAAGCAATCAAAGAGATTTTTGTAGATAA

consensusID : consensus_12430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TAAAATNCAGGTAGTTAGATATGTGNTCGAGGAAAGGAACTAGATATCCTCTCTAGAGANGCTCCTTGCAAATACCTTGCCCATATGTCCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGTTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATACTCACAATTAGTAAGCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU031863             [TAAAATNCAGGTAGTTAGATATGTGNTCGAGGAAAGGAACTAGATATCCTCTCTAGAGANGCTCCTTGCAAATACCTTGCCCATATGTCCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTCAATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTGTTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATACTCACAATTAGTAAGCAAAAAAAAAAAAAAAAAAA]




>consensus_12430#1
TAAAATNCAGGTAGTTAGATATGTGNTCGAGGAAAGGAACTAGATATCCTCTCTAGAGAN
GCTCCTTGCAAATACCTTGCCCATATGTCCAAAGATCCTCCAACGCAGTAGCTCTGATGA
TCATGTATGTTCTTGATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTT
GGGGAAAAAAATGCACGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTT
TGTTTTGCTTTGCTCAATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATT
TTGCTGTTGTTTCTGTTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTA
TACTACCTTTTTATACTCACAATTAGTAAGCAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12430#0      CCTCATTATTCCTCCTCTTCCCCCCTCGCCGCTTACAACATCCATCCCCAAACCCGCATT 60
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      CAAAACAAGCAACCCTCCTCCCGAATCGAACAAGGAAACAGATATCGCCTCTAAAACCCC 120
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      CATCGTCTCGTCTCGTCTCGTTCCCCTCTCCATCTTCCGCGGCTTTCCGCGCGATCCACC 180
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GATCCGGTTTCCCCGCGCCGTGCCCGGAGTCGGCGCTCCATTCCCGCGCCGGGTTTTGGG 240
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GTGGTGTGTTGATGCGGCGGGATTCGAGCCCTGGCCTGTGAGTTGGGCGTCGGCTCGGCG 300
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GCTGCGGGGTCGGCGCGGGCGCGGACGCGGCGGATGTCTGCTATGAGGCGGCGGCCGGTG 360
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      CTGCCGACTCACCAGGACGACATGGAGAAGGTGGGCGGGAAGCCGCCGCAGTCGCGCCTC 420
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TGCTTCCTCGCCACGCTCTGCGCCATGTTCTGGGTCCTCATCTTCTACTTCCACTTCTTC 480
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GTCATCGCCAACGAGCCTGGCTCCGCGGGGGCGGACACCGCCGCCGGCGCCGCGGCGAGC 540
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      ATTGCCCGCGCAGAACTTCCGCTCCCCGAACCCGAGCGCGTCTCCGATCCCGCGGTTCCC 600
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      CTCCCTCCGCCTGCCCTCGTCTCGGAGCCGCCACCTACCACCGCTACTGTCGCCAAAGTG 660
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GAAGATGAGGAGAAGCCCACGGCCGTCGCCCACCAGGAGGCGGCGCCCAGGGATTACGCG 720
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TTCCAGCGAGCGCTCAAGACCGCGGAGAACAAGAGCGACCCGTGCGGCGGCCGGTACATC 780
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TACGTGCACGAGCTGCCGCCGCGGTTCAACGACGACATGCTCCGGGAGTGCGAGAGGCTC 840
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      AGCCTCTGGACCAATATGTGCAAGTTCATGAGCAACGAAGGGCTTGGTCCGCCGTTGGGC 900
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      AACGAGGAAGGGGTGTTCTCCAACACCGGCTGGTACGCGACGAACCAGTTTATGGTGGAT 960
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GTCATCTTCAGGAACCGGATGAAGCAGTACGAGTGCCTGACCAAGGACTCGTCCATCGCT 1020
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GCCGCGGTGTTTGTGCCGTTCTACGCCGGGTTTGATGTGGCGAGGTATCTTTGGGGGCAC 1080
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      AACATTTCGACGAGGGATGCCGCGTCGCTGGATTTGATAGATTGGCTGAGGAAGAGGCCT 1140
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GAATGGAATGTGATGGGCGGGCGTGACCATTTCTTAGTTGGCGGCAGGATTGCGTGGGAT 1200
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TTCAGGCGCTTGACGGACGAAGAGTCGGATTGGGGCAACAAGCTGCTTTTCATGCCGGCT 1260
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GCGAAGAATATGTCGATGTTGGTGGTGGAGTCAAGCCCATGGAATGCCAATGATTTTGCG 1320
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      ATACCATATCCTACTTACTTCCACCCTGCCAAGGATGCTGATGTTTTGCTTTGGCAGGAT 1380
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      AGAATGAGGAGCCTGGAACGACCATGGTTGTTCTCGTTTGCTGGGGCTCCTCGTCCTGAT 1440
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GATCCCAAGTCTATCAGAAGTCAGCTTATTGATCAATGCAGGACATCAAGTGTCTGTAAA 1500
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TTGCTGGAGTGTGATCTTGGGGAGAGCAAGTGCCATTCCCCTAGCGCAATCATGAATATG 1560
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TTCCAGAACTCTTTGTTCTGCTTGCAGCCCCAAGGTGATTCGTATACGAGAAGATCTGCC 1620
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TTCGACTCGATGCTGGCTGGTTGCATTCCTGTTTTCTTTCATCCTGGTTCAGCGTATGTC 1680
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      CAATATACGTGGCATCTTCCGAAGAACTATACACGGTACTCTGTCTTCATCCCTGAAGAT 1740
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GGCGTCCGTAAGGGAAATGTCAGCATTGAGGACAGGCTTAAAAGTATCCATCCAGATATG 1800
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GTCAAGAAGATGAGGGAAGAGGTCATTAGTCTCATCCCAAGGGTGATATATGCTGATCCA 1860
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      AGGTCAAAGCTGGAGACCCTGAAGGATGCATTCGATGTTTCTGTAGAGGCAATAATTAAC 1920
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      AAGGTGACACAGTTGAGAAGAGATATCATCGAAGATCATGAAGATAAAGATTTTGTTGAA 1980
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      GAGAATAGCTGGAAGTATGATCTGTTGGAAGAAGGGCAGAGGACAATTGGGCCTCATGAA 2040
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      TGGGACCCGTTCTTCTCTAAGCCCAAGGACAAGGGTGGAGATTCTACTAATCCATCTACT 2100
consensus_12430#1      ------------------------------------------------------------
                                                                                   

consensus_12430#0      AATGCTGCCAAGAACTCCTGGAAAAACGAACAAAGAGGTCAGAACTAAAATACAGGTAGT 2160
consensus_12430#1      ---------------------------------------------TAAAATNCAGGTAGT 15
                                                                    ****** ********

consensus_12430#0      TAGATATGTGATCGAGGAAAGGAACTAGATATCCTCTCTAGAGAAGCTCCTTGCAAATAC 2220
consensus_12430#1      TAGATATGTGNTCGAGGAAAGGAACTAGATATCCTCTCTAGAGANGCTCCTTGCAAATAC 75
                       ********** ********************************* ***************

consensus_12430#0      CTTGCCCATATGTC-AAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTG 2279
consensus_12430#1      CTTGCCCATATGTCCAAAGATCCTCCAACGCAGTAGCTCTGATGATCATGTATGTTCTTG 135
                       ************** *********************************************

consensus_12430#0      ATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCA 2339
consensus_12430#1      ATGATCTAGCCCCTACAGGTGTAAGTGGTGGTAGAAAAGATGCTTGGGGAAAAAAATGCA 195
                       ************************************************************

consensus_12430#0      CGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTC 2399
consensus_12430#1      CGGCCTTCGAGTTGCCCTTATAAATACCATTTCACACTCTATTTTTGTTTTGCTTTGCTC 255
                       ************************************************************

consensus_12430#0      AATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTG 2459
consensus_12430#1      AATAATCCTTTGTAAGTCCTTACGGGATTTATAGGTATATCAATTTTGCTGTTGTTTCTG 315
                       ************************************************************

consensus_12430#0      TTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATA 2519
consensus_12430#1      TTTTGTTTGCTTTGATCTGTATGTGTATGGTTTAGAATTTGTGTATACTACCTTTTTATA 375
                       ************************************************************

consensus_12430#0      CTCACAATTAGTAAGCAATCAAAGAGATTTTTGTAGATAA 2559
consensus_12430#1      CTCACAATTAGTAAGCAAAAAAAAAAA-----AAAAAAAA 410
                       ******************  *** * *       * * **