cluster # 12432

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Oryza sativa
cluster # 12432 cluster # 12432 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12432#0 length = 796 sequences # 8

consensus_12432#1 length = 596 sequences # 2

consensusID : consensus_12432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 796
fasta sequence

                              [TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG-A-TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCTCGTCG]

[+] EMBL CB682631             [TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCTCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGT              ]
[+] EMBL CB682665             [cCTTTT TTTTACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTC                         ]
[+] EMBL CB620719             [                       AACTAAATCAGTACTCCTCACCATGCAAACACATCACCTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAAGCCGCTGAACCCGCCGCCGCCGCCGGCGCTGTCCCAGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCT     ]
[-] EMBL AU173499             [                                                                                           TTTTTTGTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAANAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGG                                                                                                                                                                                                                                                                              ]
[+] EMBL CB666902             [                                                                                                 GTCAACTTTGCTAAGGCAAATTAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGAGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAAGCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGATGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTCGTCATCCTCCTCGTCG]
[+] EMBL CB965105             [                                                                                                                      TAGCACATATACTAACG A TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BU673035             [                                                                                                                       AGCACATATACTAACGTA TAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL C28743               [                                                                                                                                     CG ATTAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTGAACATACTAGGAGACACCCCCTNACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTT                                                                                                                                                                                                                                                                                                                        ]




>consensus_12432#0
TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCAC
CTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTA
GCACATATACTAACGATAAGTACAGCCTGATAAATACATCCTGCTACTGAATGCATCCTG
AACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTG
CAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCC
GTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGTG
GCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATC
GATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATC
CCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGG
TGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGG
GACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGG
CGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGAT
GCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTTC
GTCATCCTCCTCGTCG

consensusID : consensus_12432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 596
fasta sequence

                              [GCCTCCTCCCCAAGATTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC]

[+] EMBL CB682664             [GCCTCCTCCCCAAGATTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC]
[+] EMBL CB682630             [GCCTCCTCCCCAAAACTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGACTGAGAGGATGGCGCAGGAGGCGGCGTCGGTGAAGATCCCGCTCGCTCGCCATCACACCACCAAATTAGGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAACTGCTGGTTTGTTACGAACCGTCTCCGCCGGGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCGGCGGTGGGCAAGGGGC                    ]




>consensus_12432#1
GCCTCCTCCCCAAGATTATTGCCCCCCAGATCTAGATCTGAATCGACGCCGCAGCCGTGA
CTGAGAGGATGGCGCAGGAGGCGGCGTCTGCGAAACACCCCCTCACTCACCATCACACCA
CCAAATTAAGCTAAGCAGCTGCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGT
TTGTTACGAGCCGTCTCCGCCGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGC
GGCAAGAGCCTCGTGGAGGTGGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTC
GGTTTCCTTCCACCCACGATCGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCG
CATGATCCCCTGGCCGAAATCCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCC
GGGGCGGGTTGCTACCGGAGGTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTT
GGCTTGAAATGCCTCGTAGGGGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAA
GGATGGCGGCGGCTGCTGCGGCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12432#0      TCTTTTAAGTAACCAAATTAGCAAACTAAATCAGTACTCCCCCCCATGCAAACACATCAC 60
consensus_12432#1      ------------------------------------------------------------
                                                                                   

consensus_12432#0      CTGGACAGAGTGCATAGGCATCACAGATATTTTTTTTGTCAACTTTGCTAAGGCAAATTA 120
consensus_12432#1      --------------------------GCCTCCTCCCCAAGATTATTGCCCCC-CAGATCT 33
                                                    *  *       *   ****     ** **  

consensus_12432#0      GCACATATACTAACGATAAGTACAGCC-TGATAAATACATCCTGCTACTGAATGCATCCT 179
consensus_12432#1      AGATCTGAATCGACGCCG----CAGCCGTGACTGAGAGGA--TGGCGCAGGAGGCGGCGT 87
                         *  *  *   ***       ***** ***   * *     **   * * * **  * *

consensus_12432#0      GAACATACTAGGAGACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCT 239
consensus_12432#1      -------CTGCGAAACACCCCCTCACTCACCATCACACCACCAAATTAAGCTAAGCAGCT 140
                              **  ** **********************************************

consensus_12432#0      GCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGC 299
consensus_12432#1      GCAAGTCCGCAACAATCAGCTGCAACAATCAGCTGCTGGTTTGTTACGAGCCGTCTCCGC 200
                       ************************************************************

consensus_12432#0      CGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCGAGAGCCTCGTGGAGGT 359
consensus_12432#1      CGTGCTCCCTCCTGGCCTTCTTGAGGGGCGGCGGCGTGGCGGCAAGAGCCTCGTGGAGGT 260
                       ******************************************* ****************

consensus_12432#0      GGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGAT 419
consensus_12432#1      GGCGCTGAGCATCAAGAAGCATCCTGTTGTGGCGGGCCTCGGTTTCCTTCCACCCACGAT 320
                       ************************************************************

consensus_12432#0      CGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAAT 479
consensus_12432#1      CGATCTCCCACTGCATCTCCATGCGCCGCCTCTCGAGCCGCATGATCCCCTGGCCGAAAT 380
                       ************************************************************

consensus_12432#0      CCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAG 539
consensus_12432#1      CCCTTAGCACAGCGGAGAGCTGCTCGTTGGTACCCCCCCCGGGGCGGGTTGCTACCGGAG 440
                       ************************************************************

consensus_12432#0      GTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGG 599
consensus_12432#1      GTGGCTCCTCTTCCTTCACCTTGTCTGCCATGGCGACCTTGGCTTGAAATGCCTCGTAGG 500
                       ************************************************************

consensus_12432#0      GGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCG 659
consensus_12432#1      GGACCCTCTTCCGGGGAGGCGCGGTGGAGAGCATCGCGAAGGATGGCGGCGGCTGCTGCG 560
                       ************************************************************

consensus_12432#0      GCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGCCGCCGCCGCCGCTGTCCCGGAGGA 719
consensus_12432#1      GCGGTGGGCGAGGGGCGAANCCGCTGAACCCGCCGC------------------------ 596
                       ************************************                        

consensus_12432#0      TGCCGTTGATGCTCCTGGTGTTGTTCCGGGGGATGGGCTCTTCCACTTCCTCTTCTTCTT 779
consensus_12432#1      ------------------------------------------------------------
                                                                                   

consensus_12432#0      CGTCATCCTCCTCGTCG 796
consensus_12432#1      -----------------