These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1517 fasta sequence [TCCATTTCCGCGTCTCTCCGCGACCAGGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA-GACG-TTTCAAAGGTTTTGTCAGTAACTCTGGATGA-TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC-ACAAGATTTTTTG-AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATA-CGTTCTCTGCTGATGATATCAT-GGGGGAAGC-GGAGATAGATCTTCAACCAATGATCACA-G-CCGTCAT-GGCCTTT-GGAGA-TCCCTCGC-GTGTT-GGTGACATGCAAATT-GGAAGG-TGGTTCATGACCAAAGACAAT-GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACA-GGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCAAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA-CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT-TTCAACCCGTTGTCATAAAAAAAAAAAATTCATTGTGGTGATATNAAGTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066163 [TCCATTTCCGCGTCTCTCCGCGACCAGGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATA CGTTCTCTGCTGATGATATCAT GGGGGAAGC GGAGATAGATCTTCAACCAATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCAAAGACAAT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACA GGAAGTGCACCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCAAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTA ] [+] EMBL AU197643 [ GGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGNTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCAGGACGNTTTCAAAGGTTTTGNCAGTAANTCTGGATGATTTGGTCTGATAGTGATAT ] [+] EMBL CA753709 [ TCTGCCCCCCCAGCACGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCACCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATCTCTTTGCTTAAAGTGTGGAGATGTACCTAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTTCCAAAGATCCCCCCAAACCCCAGATGGATTCCACTATGGAATATANGACTAAATTTATAAGAGCAAAGTATTAGACAACAGAATTTTTTGAAAGCCAg ] [+] EMBL CA767596 [ TTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATGGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGNTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGGTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATACCGTTCTCTGCTGATGATATCATGGGGGGAAGCNGGAGATAGATCTTNAACCAATGATCACAGG CCGTCATGGGCCTTTGGGAGATTCCCTCGCGGGGTTGGGGGACATGCAAATTGGGAAGGNGGGTTCATGANCAAANACAATGGCCCT ] [+] EMBL CA999582 [ ATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA CACG TTTCGAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCCAA ] [+] EMBL CA999920 [ AGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTTAACTTGAAGTATACGACCATGATA CGTTCTCTGCTGATGATATCAT GGGGGGAGC GGAGATAGATCTTCAACCAATGATCA ] [-] EMBL CA762974 [ GTAAGAGGTATTCAGTTGGCCGTNAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCCTGATA CGTTCTCTGCTGATGATATCAT GGGGGAAGC GGAGATAGATCTTCAACCAATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCAAAGACAAT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAGAACA GGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCC AAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCAAAAAAAAAA ] [+] EMBL BM421477 [ CGTTCTCTGCTGATGATATCAT GGGGGAACC GGAGATAGATCTTCAACCAATGATCACA GCCCGTCAT GCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCCAAGAC AT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACACGGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCNAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCACCCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACC ATTATATTATTCTTTAGTGAAGTGTGCTCTTCAACCCGTTGTCATAAAAAAAAAA ] [+] EMBL BM421274 [ TCAT GGGGGAA C GGAGATAGATCTTCAACC ATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACC AAGAC AT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACACGGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCC ATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCCAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTC AATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACC ATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCATAAAAAAAAAA ] [+] EMBL AU055973 [ AGAAGCGTCAGTTTTGTAATTTAAANGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCN CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGNACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCATAAAAATGGCTAATTCATTGTGGTGATATNAAGTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||