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Oryza sativa
cluster # 12436 cluster # 12436       Sequences # 10       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12436#0 length = 1517 sequences # 10  

consensusID : consensus_12436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1517
fasta sequence
                              [TCCATTTCCGCGTCTCTCCGCGACCAGGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA-GACG-TTTCAAAGGTTTTGTCAGTAACTCTGGATGA-TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC-ACAAGATTTTTTG-AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATA-CGTTCTCTGCTGATGATATCAT-GGGGGAAGC-GGAGATAGATCTTCAACCAATGATCACA-G-CCGTCAT-GGCCTTT-GGAGA-TCCCTCGC-GTGTT-GGTGACATGCAAATT-GGAAGG-TGGTTCATGACCAAAGACAAT-GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACA-GGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCAAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA-CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT-TTCAACCCGTTGTCATAAAAAAAAAAAATTCATTGTGGTGATATNAAGTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK066163             [TCCATTTCCGCGTCTCTCCGCGACCAGGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATA CGTTCTCTGCTGATGATATCAT GGGGGAAGC GGAGATAGATCTTCAACCAATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCAAAGACAAT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACA GGAAGTGCACCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCAAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTA                                                                                                   ]
[+] EMBL AU197643             [                          GGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGNTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCAGGACGNTTTCAAAGGTTTTGNCAGTAANTCTGGATGATTTGGTCTGATAGTGATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA753709             [                             TCTGCCCCCCCAGCACGACGAACTGCCCGGTGGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGCCGGCGGCACCCCTCCCCCCACCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTATTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCAACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATCTCTTTGCTTAAAGTGTGGAGATGTACCTAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTTCCAAAGATCCCCCCAAACCCCAGATGGATTCCACTATGGAATATANGACTAAATTTATAAGAGCAAAGTATTAGACAACAGAATTTTTTGAAAGCCAg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA767596             [                                                                                                                                                                                                                                                                                           TTGAAGGATCTAATGTTAAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGCTAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA GACG TTTCAAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATGGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGNTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGGTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATACCGTTCTCTGCTGATGATATCATGGGGGGAAGCNGGAGATAGATCTTNAACCAATGATCACAGG CCGTCATGGGCCTTTGGGAGATTCCCTCGCGGGGTTGGGGGACATGCAAATTGGGAAGGNGGGTTCATGANCAAANACAATGGCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA999582             [                                                                                                                                                                                                                                                                                                                                                                                    ATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCA CACG TTTCGAAGGTTTTGTCAGTAACTCTGGATGA TTGGTCTGATAGTGATATAGATTCCATGCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGATCACCCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA999920             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCCAAGTATGAGAC ACAAGATTTTTTG AAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGATGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGTCGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCAGTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTTAACTTGAAGTATACGACCATGATA CGTTCTCTGCTGATGATATCAT GGGGGGAGC GGAGATAGATCTTCAACCAATGATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CA762974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTAAGAGGTATTCAGTTGGCCGTNAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCAGAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAAGATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCCTGATA CGTTCTCTGCTGATGATATCAT GGGGGAAGC GGAGATAGATCTTCAACCAATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCAAAGACAAT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAGAACA GGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCC AAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCAAAAAAAAAA                                                       ]
[+] EMBL BM421477             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGTTCTCTGCTGATGATATCAT GGGGGAACC GGAGATAGATCTTCAACCAATGATCACA GCCCGTCAT  GCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACCCAAGAC AT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACACGGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCNAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCACCCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACC ATTATATTATTCTTTAGTGAAGTGTGCTCTTCAACCCGTTGTCATAAAAAAAAAA                                                     ]
[+] EMBL BM421274             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCAT GGGGGAA C GGAGATAGATCTTCAACC ATGATCACA G CCGTCAT GGCCTTT GGAGA TCCCTCGC GTGTT GGTGACATGCAAATT GGAAGG TGGTTCATGACC AAGAC AT GCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACACGGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATGGGTTCC ATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCCAAAAAAATTACTCAAGAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTC AATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCA CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGCACTCACGACC ATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCATAAAAAAAAAA                                                     ]
[+] EMBL AU055973             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGAAGCGTCAGTTTTGTAATTTAAANGAATGGCTTCAAATCCCGTGTACTTACTGAATCTCTGTCTTCAACATTTTGGCCN CCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCATGTTGTAATCCGTCGGCTGNACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCT TTCAACCCGTTGTCATAAAAATGGCTAATTCATTGTGGTGATATNAAGTNCTAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_12436#0 TCCATTTCCGCGTCTCTCCGCGACCAGGCTCTGCCCCCCCAGCGCGACGAACTGCCCGGT GGGCGATCGCTCCACCGCCGCCGGCGACCTCACTCCCCCCCACCACCACCGCGAAGCCGC CGGCGGCACCCCTCCCCCCGCCCTCCCGCCCGCCGCGATCCATCCGGTACAAAGAGTTTA TTTGCTGTTGTGAGCTATCCGAGGTTCCAAATCCAAAATGAGTACCACTAATCACTATCA ACACATCAAGTCAAACAAGCCTGTTCTAGGCAAAGCAAGAAAATTGAAGGATCTAATGTT AAAAAGTGACAACCGGATATGTGCTGATTGTGGTGCACCTGATCCCAAATGGGCGTCTGC TAATATCGGAGTATTTCTTTGCTTAAAGTGTGGAGATGTACATAGAGCACTTGGACCAGA CGTTTCAAAGGTTTTGTCAGTAACTCTGGATGATTGGTCTGATAGTGATATAGATTCCAT GCTTGAGATTGGTGGAAACTCATATGCAAATTCCATTTATGAGTCTTTTCTTCCAAAAGA TCACCCAAAACCCAAGATGGATTCAACTATGGAATATAGGACTAAATTTATAAGAGCCAA GTATGAGACACAAGATTTTTTGAAGCCAAGTTTGCGCATTACATCAAAGGGTTCTTTTGA TGCGACCAATGCTGTGAAGAGTGTAACTAGCAGTATCTCTAGCGCTTCAGGGAAGCATGT CGCTGACGATACAAGAGAATTTGTTGGAGAGCTGAACATTACAGTGGTAAGAGGTATTCA GTTGGCCGTCAGAGACATGCTAACGAGCGATCCATATGTTGTTCTAACACTTGGGGAGCA GAAAGCTCAAACCACTGTTAAACCGAGTGACTTGAACCCAGTATGGAATGAGGTGCTTAA GATATCAATTCCTCGAAATTATGGACCTCTTAAACTTGAAGTATACGACCATGATACGTT CTCTGCTGATGATATCATGGGGGAAGCGGAGATAGATCTTCAACCAATGATCACAGCCGT CATGGCCTTTGGAGATCCCTCGCGTGTTGGTGACATGCAAATTGGAAGGTGGTTCATGAC CAAAGACAATGCCCTGGTGAAAGATAGCACTGTCAATGTTGTGTCGGGCAAGGTAAAACA GGAAGTGCATCTAAAGTTGCAGAATGTAGAATCAGGTGAGATGGAGTTAGAACTGGAATG GGTTCCAATACCCTAGATTAATAAAGCTCGATTGGTTCTCTGCCAAAAAAAATTACTCAA GAAGCGTCAGTTTTGTAATTTAAATGAATGGCTTCAAATCCCGTGTACTTACTGAATCTC TGTCTTCAACATTTTGGCCACCCGAACGAAATTCGTAAAAATGCCATTGTAAAATATCAT GTTGTAATCCGTCGGCTGCACTCACGACCAATTATATTATTCTTTAGTGAAGTGTGCTTT CAACCCGTTGTCATAAAAAAAAAAAATTCATTGTGGTGATATNAAGTNCTAAAAAAAAAA AAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)