These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1404 fasta sequence [GCGGCTATTTCATTTCCTCTTAGAGTATAGTTGCCGTCCATACTCCAAATACGTACTGCCTGATGGGATCGTCAGGGGCACCAGAGTTGACACATGAAATGAGCAGCAATCCTTGTGCCGGCGGGAGAGCAACAATCCTGGGAATCGGCACGGCCGTGCCGGTTCATGTTTATGAGCAGAAGTCATTCCCTGATTATTACTTTGAGATTACCGATAGCAATCACTTGGTCGACCTAAAAGCCAAGTTTGCAAACATCTGCGAGAAGACATCGACGGAGAAGCGGCACATGTACATCTCTGATGAGTGGCTGAGGGCCAACCCGTCGGTGACGGCGTACATGTCCACCTCGCTCAACGTACGGCAGCAGGTCGCCGAGGAGGGCATCCCTCGGCTCGGTGCGGAGGCGGCGCGCAAGGCCATTGACGACTGGGGGAAGCCGGCGTCGAGCATCACCCACATCGTCTTCGCCACCACCAGCACCGGCTGCCTGCCCAGCGCCGACGTCGTGCTCATCAAGCTCCTCGGCCTCCCGCTGTCGACCAAGCGTGTCATGCTCTACCAGGCTGGCTGCTTCGGAGGCACCACGGCGCTGCGTGTGGCCAAGGACATCGCCGAGAGCAACCACGGTGCCAGGGTGCTCGTGGTGACATCCGAGGTGATGTCGCTGGTCATCCGTGGCCCCTCCGAATCCCACATCGGCAACCTCGTCGGCCAAGCCGTGTTCGGCGACGCCGCGGGCGCCGTCGTGGTGGGGTGCTGCCCCACCGCCGACGAGCGTCGTCCCGTGTTCGAGTTGGTCCGGGCATCGCAGGACGTGATACCGGGGACGGACGACGCCGTGGTGGTGAAGGTGCGGCAGGAAGGGGTGGTGATCACCATGCACCGCGACGTGCCGCTCCACGTATCCAACGCCATCGGCGGCGTGGTCAAGAGCACGTTCCACGAGATAGACATGAAGATCACCAGCTACAACGAGGCATTCTGGCTGCTGCACGCCGGTGGGAGGGGGATCGTGGATGGCGTGGAGGAGAGGCTGGGCCTCGGCGGGGAGAAGCTGGCTGCGACGAGGGAGGTGATGAGGCAGTATGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGAAGAGGAGGTCGGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTTGGCCCCGGACTCACCTTGGAGACCATGCTGCTCCGTGCAGTGCCACGTAACAGCTAGCTATACATACGCCAACATGTGATATCGATCGACCGGTAACACGAATAAATTAAGCAGGGCAATCTACAAGTTATATTTTCCAGTGCGTACATGTTATATTTTCCAGTGTGTGACACCAGTAAAAATAAGTCTACATGTTATA] [+] EMBL AK061132 [GCGGCTATTTCATTTCCTCTTAGAGTATAGTTGCCGTCCATACTCCAAATACGTACTGCCTGATGGGATCGTCAGGGGCACCAGAGTTGACACATGAAATGAGCAGCAATCCTTGTGCCGGCGGGAGAGCAACAATCCTGGGAATCGGCACGGCCGTGCCGGTTCATGTTTATGAGCAGAAGTCATTCCCTGATTATTACTTTGAGATTACCGATAGCAATCACTTGGTCGACCTAAAAGCCAAGTTTGCAAACATCTGCGAGAAGACATCGACGGAGAAGCGGCACATGTACATCTCTGATGAGTGGCTGAGGGCCAACCCGTCGGTGACGGCGTACATGTCCACCTCGCTCAACGTACGGCAGCAGGTCGCCGAGGAGGGCATCCCTCGGCTCGGTGCGGAGGCGGCGCGCAAGGCCATTGACGACTGGGGGAAGCCGGCGTCGAGCATCACCCACATCGTCTTCGCCACCACCAGCACCGGCTGCCTGCCCAGCGCCGACGTCGTGCTCATCAAGCTCCTCGGCCTCCCGCTGTCGACCAAGCGTGTCATGCTCTACCAGGCTGGCTGCTTCGGAGGCACCACGGCGCTGCGTGTGGCCAAGGACATCGCCGAGAGCAACCACGGTGCCAGGGTGCTCGTGGTGACATCCGAGGTGATGTCGCTGGTCATCCGTGGCCCCTCCGAATCCCACATCGGCAACCTCGTCGGCCAAGCCGTGTTCGGCGACGCCGCGGGCGCCGTCGTGGTGGGGTGCTGCCCCACCGCCGACGAGCGTCGTCCCGTGTTCGAGTTGGTCCGGGCATCGCAGGACGTGATACCGGGGACGGACGACGCCGTGGTGGTGAAGGTGCGGCAGGAAGGGGTGGTGATCACCATGCACCGCGACGTGCCGCTCCACGTATCCAACGCCATCGGCGGCGTGGTCAAGAGCACGTTCCACGAGATAGACATGAAGATCACCAGCTACAACGAGGCATTCTGGCTGCTGCACGCCGGTGGGAGGGGGATCGTGGATGGCGTGGAGGAGAGGCTGGGCCTCGGCGGGGAGAAGCTGGCTGCGACGAGGGAGGTGATGAGGCAGTATGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGAAGAGGAGGTCGGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTTGGCCCCGGACTCACCTTGGAGACCATGCTGCTCCGTGCAGTGCCACGTAACAGCTAGCTATACATACGCCAACATGTGATATCGATCGACCGGTAACACGAATAAATTAAGCAGGGCAATCTACAAGTTATATTTTCCAGTGCGTACATGTTATATTTTCCAGTGTGTGACACCAGTAAAAATAAGTCTACATGTTATA] consensusID : consensus_1244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CAGCTACAACGAGGCGTTCTGCTGCTGCACGCCGCGGGAGGGGGATCGTGGATGGCGTGGAGGAGAAGCTGGATCTCGGGGAGGAGAAGCTGGCGGCGACGAGGGAGGTGATGAGCGCAGTACGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGCGGAGGAGGTCAGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTCGGCCCCGGACTCACCCTTGGAGACCATGCTGCTCCGCGCGCTGCCACGCAACAATTAGCTATGCACATACGCCAAAATGTGATATTGATCGACCAGTACTACACGAATAAATTAAGTAGGGATGTGTTATATTTCCAGCATTACGTGACACCAGTAAATAAATACCAAGATCGTCGTGTTAATTGCTGCTTGTTAGTTGTTACTCGNCGGTTAATTTAGTTGGTTTCGGAACCAACTGAAGTATTGTGGACGCCTGGATCATTGTAATAATTATCCTATTTGGAATAAAGTTATGTGTGATCAAAAAAAA] [+] EMBL BM419391 [CAGCTACAACGAGGCGTTCTGCTGCTGCACGCCGCGGGAGGGGGATCGTGGATGGCGTGGAGGAGAAGCTGGATCTCGGGGAGGAGAAGCTGGCGGCGACGAGGGAGGTGATGAGCGCAGTACGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGCGGAGGAGGTCAGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATCGCCTTCGGCCCCGGACTCACCCTTGGAGACCATGCTGCTCCGCGCGCTGCCACGCAACAATTAGCTATGCACATACGCCAAAATGTGATATTGATCGACCAGTACTACACGAATAAATTAAGTAGGGATGTGTTATATTTCCAGCATTACGTGACACCAGTAAATAAATACCAAGATCGTCGTGTTAATTGCTGCTTGTTAGTTGTTACTCGNCGGTTAATTTAGTTGGTTTCGGAACCAACTGAAGTATTGTGGACGCCTGGATCATTGTAATAATTATCCTATTTGGAATAAAGTTATGTGTGATCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1244#0 GCGGCTATTTCATTTCCTCTTAGAGTATAGTTGCCGTCCATACTCCAAATACGTACTGCC 60 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 TGATGGGATCGTCAGGGGCACCAGAGTTGACACATGAAATGAGCAGCAATCCTTGTGCCG 120 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 GCGGGAGAGCAACAATCCTGGGAATCGGCACGGCCGTGCCGGTTCATGTTTATGAGCAGA 180 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 AGTCATTCCCTGATTATTACTTTGAGATTACCGATAGCAATCACTTGGTCGACCTAAAAG 240 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 CCAAGTTTGCAAACATCTGCGAGAAGACATCGACGGAGAAGCGGCACATGTACATCTCTG 300 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 ATGAGTGGCTGAGGGCCAACCCGTCGGTGACGGCGTACATGTCCACCTCGCTCAACGTAC 360 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 GGCAGCAGGTCGCCGAGGAGGGCATCCCTCGGCTCGGTGCGGAGGCGGCGCGCAAGGCCA 420 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 TTGACGACTGGGGGAAGCCGGCGTCGAGCATCACCCACATCGTCTTCGCCACCACCAGCA 480 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 CCGGCTGCCTGCCCAGCGCCGACGTCGTGCTCATCAAGCTCCTCGGCCTCCCGCTGTCGA 540 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 CCAAGCGTGTCATGCTCTACCAGGCTGGCTGCTTCGGAGGCACCACGGCGCTGCGTGTGG 600 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 CCAAGGACATCGCCGAGAGCAACCACGGTGCCAGGGTGCTCGTGGTGACATCCGAGGTGA 660 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 TGTCGCTGGTCATCCGTGGCCCCTCCGAATCCCACATCGGCAACCTCGTCGGCCAAGCCG 720 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 TGTTCGGCGACGCCGCGGGCGCCGTCGTGGTGGGGTGCTGCCCCACCGCCGACGAGCGTC 780 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 GTCCCGTGTTCGAGTTGGTCCGGGCATCGCAGGACGTGATACCGGGGACGGACGACGCCG 840 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 TGGTGGTGAAGGTGCGGCAGGAAGGGGTGGTGATCACCATGCACCGCGACGTGCCGCTCC 900 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 ACGTATCCAACGCCATCGGCGGCGTGGTCAAGAGCACGTTCCACGAGATAGACATGAAGA 960 consensus_1244#1 ------------------------------------------------------------ consensus_1244#0 TCACCAGCTACAACGAGGCATTCTGGCTGCTGCACGCCGGTGGGAGGGGGATCGTGGATG 1020 consensus_1244#1 ----CAGCTACAACGAGGCGTTCTG-CTGCTGCACGCCG-CGGGAGGGGGATCGTGGATG 54 *************** ***** ************* ******************* consensus_1244#0 GCGTGGAGGAGAGGCTGGGCCTCGGCGGGGAGAAGCTGGCTGCGACGAGGGAGGTGATGA 1080 consensus_1244#1 GCGTGGAGGAGAAGCTGGATCTCGGGGAGGAGAAGCTGGCGGCGACGAGGGAGGTGATGA 114 ************ ***** ***** * ************ ******************* consensus_1244#0 G-GCAGTATGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGAAGAGG 1139 consensus_1244#1 GCGCAGTACGGCAACACGCGTAGCTCCACCATCTTCTTGGCGATGGAGGAGATGCGGAGG 174 * ****** ********************************************* **** consensus_1244#0 AGGTCGGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATC 1199 consensus_1244#1 AGGTCAGAGGAGCGAGGGATGGCGACGGCGGGGGAAGGCCTCGAGTGGGGGATGCTCATC 234 ***** ****************************************************** consensus_1244#0 GCCTTTGGCCCCGGACTCACC-TTGGAGACCATGCTGCTCCGTGCAGTGCCACGTAACAG 1258 consensus_1244#1 GCCTTCGGCCCCGGACTCACCCTTGGAGACCATGCTGCTCCGCGCGCTGCCACGCAACAA 294 ***** *************** ******************** ** ******* **** consensus_1244#0 CTAGCTAT--ACATACGCCAACATGTGATATCGATCGACCGGTA--ACACGAATAAATTA 1314 consensus_1244#1 TTAGCTATGCACATACGCCAAAATGTGATATTGATCGACCAGTACTACACGAATAAATTA 354 ******* *********** ********* ******** *** ************** consensus_1244#0 AGCAGGGCAATCTACAAGTTATATTTTCCAGTGCGTACATGTTATATTTTCCAGTGT-GT 1373 consensus_1244#1 AGTAGGGATGTGTTATATTTCCAGCATTACGTGACACCAGTAAATAAATACCAAGATCGT 414 ** **** * * * ** * * *** ** *** * *** * ** consensus_1244#0 GACACCAGTAAAAATAAGTCTACATGTTATA----------------------------- 1404 consensus_1244#1 CGTGTTAATTGCTGCTTGT-TAGTTGTTACTCGNCGGTTAATTTAGTTGGTTTCGGAACC 473 * * ** ** ***** consensus_1244#0 ------------------------------------------------------------ consensus_1244#1 AACTGAAGTATTGTGGACGCCTGGATCATTGTAATAATTATCCTATTTGGAATAAAGTTA 533 consensus_1244#0 ----------------- consensus_1244#1 TGTGTGATCAAAAAAAA 550 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||