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Oryza sativa
cluster # 12441 cluster # 12441       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12441#0 length = 1680 sequences # 4  
consensus_12441#1 length = 1626 sequences # 5  
consensus_12441#2 length = 695 sequences # 1  

consensusID : consensus_12441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1680
fasta sequence
                              [TCACATCGCCAGCTCGTCCGCTTGCCCCGCACCGCAACCGCGG-CGCGGAGGAGGAGAGCTCTCGCGCCGCGCGTGCGCGCGCGCGTGCGG-GCGTGCGCGGGCGATCGAATCCGATCGCCATGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTGCTACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACGGCGGCGGAGGTCGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCTCCGCGGCGCACGCCAACGGCGGCGCCG-ACCTGGCCGTCTTCGAGCAGTTCGAGCGGCT-GGAGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCC-TACTTCCTTCTTTTGAATCT-GCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCATTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTCTTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTC-AAAGGTCT-GCTATCACCTTGGAAAGGTAT-ATTGC-TTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAAAAGCTGTGGCTACTGAGTGCAAAACAACCTTCTTCAATATTTCAGCCTCATCAATTGTCAGTAAATGGCGTGGTGATTCGGAGAAACTAGTGAAAGTCTTATTTGAGCTTGCAAGGCATCATGCACCATCCACCATTTTTCTCGATGAGATTGATGCTATTATTAGCCAACGTGGTGAAGCTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATGAGAGAAACATTGTACATTTGTACTGGGTNCCNCCAAAAAAAAAA]

[+] EMBL AK069899             [TCACATCGCCAGCTCGTCCGCTTGCCCCGCACCGCAACCGCGG CGCGGAGGAGGAGAGCTCTCGCGCCGCGCGTGCGCGCGCGCGTGCGG GCGTGCGCGGGCGATCGAATCCGATCGCCATGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTGCTACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACGGCGGCGGAGGTCGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCTCCGCGGCGCACGCCAACGGCGGCGCCG ACCTGGCCGTCTTCGAGCAGTTCGAGCGGCT GGAGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCC TACTTCCTTCTTTTGAATCT GCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCATTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTCTTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTC AAAGGTCT GCTATCACCTTGGAAAGGTAT ATTGC TTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAAAAGCTGTGGCTACTGAGTGCAAAACAACCTTCTTCAATATTTCAGCCTCATCAATTGTCAGTAAATGGCGTGGTGATTCGGAGAAACTAGTGAAAGTCTTATTTGAGCTTGCAAGGCATCATGCACCATCCACCATTTTTCTCGATGAGATTGATGCTATTATTAGCCAACGTGGTGAAGCTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGGATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATGAGAGAAACATTGTACATTTGT                       ]
[+] EMBL AU091713             [             TCGTCCGCTTGCCCCGCACCGCAACCGCGGACGC GAGGAGGAGAGCTCTCGCGCCGCGCGTGCGNCCGCGATNACGGNGCGTGCGCGGGCGATCGAATCCGATCGCCATGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTACTACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACGGCGGCGGAGGTCGCGGCTACG GCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCTCCGCGGCGCACGCCAACGG GGCGCCGAACCTGGCCGTCTTCGAGCAGTTCGAGCGGCTGGGAGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCCTTACTTCCTTCTTTTGAATCTGGCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCATTCGTGGGAGTCCAGATGTNAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTCTTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTCAAAAGGTCTGGCTATNACCTTGGAAAGGTATAATTGCTTTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAAAAGCTGTGGCTACTGAGTGCAANACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK062045             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TAGCCAACGTGGTGAAGCTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGCCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATGAGAGA                                       ]
[+] EMBL AU055909             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGAAACGTATTC TGGTCCCTTCCCAGAGCAAGAAGCTA ACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATGAGAGAAACATTGTACATTTGTACTGGGTNCCNCCAAAAAAAAAA]


>consensus_12441#0 TCACATCGCCAGCTCGTCCGCTTGCCCCGCACCGCAACCGCGGCGCGGAGGAGGAGAGCT CTCGCGCCGCGCGTGCGCGCGCGCGTGCGGGCGTGCGCGGGCGATCGAATCCGATCGCCA TGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTGCT ACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACG GCGGCGGAGGTCGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCT CCGCGGCGCACGCCAACGGCGGCGCCGACCTGGCCGTCTTCGAGCAGTTCGAGCGGCTGG AGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCCTAC TTCCTTCTTTTGAATCTGCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCA TTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTC TTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTCAAAGGTCTGCTAT CACCTTGGAAAGGTATATTGCTTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAA AAGCTGTGGCTACTGAGTGCAAAACAACCTTCTTCAATATTTCAGCCTCATCAATTGTCA GTAAATGGCGTGGTGATTCGGAGAAACTAGTGAAAGTCTTATTTGAGCTTGCAAGGCATC ATGCACCATCCACCATTTTTCTCGATGAGATTGATGCTATTATTAGCCAACGTGGTGAAG CTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATG GGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAAC TGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAG AAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCC CATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGT GCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAG AAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGC TTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCA ATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTT GCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGA AATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAG AATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTG TTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTT GCCCTTTCGGAATATGAGAGAAACATTGTACATTTGTACTGGGTNCCNCCAAAAAAAAAA



consensusID : consensus_12441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1626
fasta sequence
                              [GCTCGTCCGCTTGCCCCGCACCGCAACCGCGGCGCGGAGGAGGAGAGCTCTCGCGCCGCGCGTGCGCGCGCGCGTGCGGGCGTGCGCGGGCGATCGAATCCGATCGCCATGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTACTACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACGGCGGCGGAGGTCGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCACCCGCCGACCTGGCCGTCTTCGAGCAGTTCGAGCGGCTGGAGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCCTACTTCCTTCTTTTGAATCTGCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCATTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTCTTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTCAAAGGTCTGCTATCACCTTGGAAAGGTATATTGCTTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAAAAGCTGTGGCTACTGAGTGCAAAACAACCTTCTTCAATATTTCAGCCTCATCAATTGTCAGTAAATGGCGTGGTGATTCGGAGAAACTAGTGAAAGTCTTATTTGAGCTTGCAAGGCATCATGCACCATCCACCATTTTTCTCGATGAGATTGATGCTATTATTAGCCAACGTGGTGAAGCTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGG-AGAAACGTATTCTTGTTCCC-TTACCAGAGCAAG-AAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATAAAAGAAAAAAAAAAAAACTCGAG]

[+] EMBL AK065017             [GCTCGTCCGCTTGCCCCGCACCGCAACCGCGGCGCGGAGGAGGAGAGCTCTCGCGCCGCGCGTGCGCGCGCGCGTGCGGGCGTGCGCGGGCGATCGAATCCGATCGCCATGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTACTACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACGGCGGCGGAGGTCGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCACCCGCCGACCTGGCCGTCTTCGAGCAGTTCGAGCGGCTGGAGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCCTACTTCCTTCTTTTGAATCTGCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCATTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTCTTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTCAAAGGTCTGCTATCACCTTGGAAAGGTATATTGCTTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAAAAGCTGTGGCTACTGAGTGCAAAACAACCTTCTTCAATATTTCAGCCTCATCAATTGTCAGTAAATGGCGTGGTGATTCGGAGAAACTAGTGAAAGTCTTATTTGAGCTTGCAAGGCATCATGCACCATCCACCATTTTTCTCGATGAGATTGATGCTATTATTAGCCAACGTGGTGAAGCTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGG AGAAACGTATTCTTGTTCCC TTACCAGAGCAAG AAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATGAGA                  ]
[+] EMBL C73417               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCAATGTTGCGCCGTTTGG AGAAACGTATTCTTGTTCCC TTACCAGAGCAAG AAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTC                                                                                                                                                                                                                                                          ]
[+] EMBL AU165692             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTGCNCCGTTTGGAAGAAACGTATTCNTGGTCCCNTTACCAGAGCAAGAAAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAAAAAAA                    ]
[-] EMBL CF196525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           nGGCACAATGANTATCCCATATGATNNNNNNGTGGAGAAANNNGNAGGATATTCANNNNNNGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTNCNTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATAAAAAAAAAAAAAAAAAACTCGAG]
[-] EMBL D43392               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACAACATAGATTGCTGAATTNCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTG                                    ]


>consensus_12441#1 GCTCGTCCGCTTGCCCCGCACCGCAACCGCGGCGCGGAGGAGGAGAGCTCTCGCGCCGCG CGTGCGCGCGCGCGTGCGGGCGTGCGCGGGCGATCGAATCCGATCGCCATGACCGGCGCC GACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTACTACGAGGTGCGC CTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACGGCGGCGGAGGT CGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCACCCGCCGACCT GGCCGTCTTCGAGCAGTTCGAGCGGCTGGAGAGGAAGGTGGAGCTGCGGAATGGAGCAAT TGAAGCTGGGCCTCCGCAGAAATCCCTACTTCCTTCTTTTGAATCTGCAGAAATGCGCAA TTTAGCTGAGACATTGTTGAGGGATATCATTCGTGGGAGTCCAGATGTCAAATGGGAAAG CATTAAAGGTTTGGAGAATGCAAAGCGTCTTCTGAAAGAAGCAGTTGTGATGCCTATAAA ATACCCCAAGTACTTCAAAGGTCTGCTATCACCTTGGAAAGGTATATTGCTTTTTGGTCC ACCAGGAACAGGAAAGACAATGCTAGCAAAAGCTGTGGCTACTGAGTGCAAAACAACCTT CTTCAATATTTCAGCCTCATCAATTGTCAGTAAATGGCGTGGTGATTCGGAGAAACTAGT GAAAGTCTTATTTGAGCTTGCAAGGCATCATGCACCATCCACCATTTTTCTCGATGAGAT TGATGCTATTATTAGCCAACGTGGTGAAGCTCGTAGTGAACATGAAGCCAGTCGGCGATT GAAGACTGAGCTATTAATACAGATGGATGGGTTAACTAAGACAGATGATCTCGTTTTTGT TCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAA ACGTATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGCTCTT GCCATCTGTTCCTGGCACAATGAATATCCCATATGATGTTCTTGTGGAGAAAACTGAAGG ATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAG GTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGT TGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCA TCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTA AAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTG AAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGAC TTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAAC TAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTG ACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATAAAAGAAAAAAAAAAAAA CTCGAG



consensusID : consensus_12441#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence
                              [AGGACGAGACAAGGGGGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCGTATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATGAGAGAAACATTGTCCAAAAAAAAAAAAA]

[-] EMBL CA762989             [AGGACGAGACAAGGGGGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCGTATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCGGAATATGAGAGAAACATTGTCCAAAAAAAAAAAAA]


>consensus_12441#2 AGGACGAGACAAGGGGGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGAC ATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCCCGTATGATG TTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGTGCAAGGAGG CGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAGAAGAAGTGC CTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGCTTGCACTAA GGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCAATCAAGACT ATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTTGCACAACAT AGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGAAATCCTCCT GACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAGAATGCTGAA TTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTGTTCCTGTAC CATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTTGCCCTTTCG GAATATGAGAGAAACATTGTCCAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12441#0      TCACATCGCCAGCTCGTCCGCTTGCCCCGCACCGCAACCGCGGCGCGGAGGAGGAGAGCT 60
consensus_12441#1      -----------GCTCGTCCGCTTGCCCCGCACCGCAACCGCGGCGCGGAGGAGGAGAGCT 49
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      CTCGCGCCGCGCGTGCGCGCGCGCGTGCGGGCGTGCGCGGGCGATCGAATCCGATCGCCA 120
consensus_12441#1      CTCGCGCCGCGCGTGCGCGCGCGCGTGCGGGCGTGCGCGGGCGATCGAATCCGATCGCCA 109
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      TGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTGCT 180
consensus_12441#1      TGACCGGCGCCGACGAGCCGTCCATCACCCGCTGGACCTTCGAGGACTTCGAGGTCTACT 169
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      ACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACG 240
consensus_12441#1      ACGAGGTGCGCCTCGGCATCCGCCGCGAGCCCGGGGGAGATGAAGACGGCGACGGCGACG 229
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      GCGGCGGAGGTCGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCT 300
consensus_12441#1      GCGGCGGAGGTCGCGGCTACGCGCCGCTTGGATCCGGCTCCGCGGGCAGCACCCGCCCCA 289
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      CCGCGGCGCACGCCAACGGCGGCGCCGACCTGGCCGTCTTCGAGCAGTTCGAGCGGCTGG 360
consensus_12441#1      CC--------------------CGCCGACCTGGCCGTCTTCGAGCAGTTCGAGCGGCTGG 329
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      AGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCCTAC 420
consensus_12441#1      AGAGGAAGGTGGAGCTGCGGAATGGAGCAATTGAAGCTGGGCCTCCGCAGAAATCCCTAC 389
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      TTCCTTCTTTTGAATCTGCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCA 480
consensus_12441#1      TTCCTTCTTTTGAATCTGCAGAAATGCGCAATTTAGCTGAGACATTGTTGAGGGATATCA 449
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      TTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTC 540
consensus_12441#1      TTCGTGGGAGTCCAGATGTCAAATGGGAAAGCATTAAAGGTTTGGAGAATGCAAAGCGTC 509
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      TTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTCAAAGGTCTGCTAT 600
consensus_12441#1      TTCTGAAAGAAGCAGTTGTGATGCCTATAAAATACCCCAAGTACTTCAAAGGTCTGCTAT 569
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      CACCTTGGAAAGGTATATTGCTTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAA 660
consensus_12441#1      CACCTTGGAAAGGTATATTGCTTTTTGGTCCACCAGGAACAGGAAAGACAATGCTAGCAA 629
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      AAGCTGTGGCTACTGAGTGCAAAACAACCTTCTTCAATATTTCAGCCTCATCAATTGTCA 720
consensus_12441#1      AAGCTGTGGCTACTGAGTGCAAAACAACCTTCTTCAATATTTCAGCCTCATCAATTGTCA 689
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      GTAAATGGCGTGGTGATTCGGAGAAACTAGTGAAAGTCTTATTTGAGCTTGCAAGGCATC 780
consensus_12441#1      GTAAATGGCGTGGTGATTCGGAGAAACTAGTGAAAGTCTTATTTGAGCTTGCAAGGCATC 749
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      ATGCACCATCCACCATTTTTCTCGATGAGATTGATGCTATTATTAGCCAACGTGGTGAAG 840
consensus_12441#1      ATGCACCATCCACCATTTTTCTCGATGAGATTGATGCTATTATTAGCCAACGTGGTGAAG 809
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      CTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATG 900
consensus_12441#1      CTCGTAGTGAACATGAAGCCAGTCGGCGATTGAAGACTGAGCTATTAATACAGATGGATG 869
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      GGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAAC 960
consensus_12441#1      GGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAAC 929
consensus_12441#2      ------------------------------------------------------------
                                                                                   

consensus_12441#0      TGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAG 1020
consensus_12441#1      TGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAG 989
consensus_12441#2      AGGACGAGACAAGGG---------GGGAGAAACGTATTCTTGTTCCCTTACCAGAGCAAG 51
                        *** *   *** *           ***********************************

consensus_12441#0      AAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCC 1080
consensus_12441#1      AAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCC 1049
consensus_12441#2      AAGCTAGACATGCCATGTTTGAAGAGCTCTTGCCATCTGTTCCTGGCACAATGAATATCC 111
                       ************************************************************

consensus_12441#0      CATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGT 1140
consensus_12441#1      CATATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGT 1109
consensus_12441#2      CGTATGATGTTCTTGTGGAGAAAACTGAAGGATATTCAGGCTCTGATATACGCCTTGTGT 171
                       * **********************************************************

consensus_12441#0      GCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAG 1200
consensus_12441#1      GCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAG 1169
consensus_12441#2      GCAAGGAGGCGGCAATGCAACCCCTTAGAAGGTTAATGTCGGTTCTTGAAGGAAGGCAAG 231
                       ************************************************************

consensus_12441#0      AAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGC 1260
consensus_12441#1      AAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGC 1229
consensus_12441#2      AAGAAGTGCCTGAGGATGAGTTGCCTGAAGTTGGTCCAGTAACGACAGAAGACATTGAGC 291
                       ************************************************************

consensus_12441#0      TTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCA 1320
consensus_12441#1      TTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCA 1289
consensus_12441#2      TTGCACTAAGGAATACACGGCCATCTGCTCATCTTCATGTACATAGATACGAAAAATTCA 351
                       ************************************************************

consensus_12441#0      ATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTT 1380
consensus_12441#1      ATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTT 1349
consensus_12441#2      ATCAAGACTATGGCAGTCATGTCCTCAGCTAAAGGTGAGTTGCAAAAGCAAAGGTTATTT 411
                       ************************************************************

consensus_12441#0      GCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGA 1440
consensus_12441#1      GCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGA 1409
consensus_12441#2      GCACAACATAGATTGCTGAATTTCCTCCTTGAAGCTTGAACTGTTCCCTAGTATTGTGGA 471
                       ************************************************************

consensus_12441#0      AATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAG 1500
consensus_12441#1      AATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAG 1469
consensus_12441#2      AATCCTCCTGACGGAATCTTGCCGATAAGACTTTTCATTTGCACCTAGTATGGTTGATAG 531
                       ************************************************************

consensus_12441#0      AATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTG 1560
consensus_12441#1      AATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTG 1529
consensus_12441#2      AATGCTGAATTACCGCTGATGTATTTACAACTAATGAGCATTCTCTTTACACAATATTTG 591
                       ************************************************************

consensus_12441#0      TTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTT 1620
consensus_12441#1      TTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTT 1589
consensus_12441#2      TTCCTGTACCATGTATATTATCATTTGTTTGACGAATAATAAGCTATTTGGGTAATCCTT 651
                       ************************************************************

consensus_12441#0      GCCCTTTCGGAATATGAGAGAAACATT----GTACATTTGTACTGGGTNCCNCCAAAAAA 1676
consensus_12441#1      GCCCTTTCGGAATAAAAGAAAAAAAA-----AAAAACTCGAG------------------ 1626
consensus_12441#2      GCCCTTTCGGAATATGAGAGAAACATTGTCCAAAAAAAAAAAAA---------------- 695
                       **************  *** *** *        * *                        

consensus_12441#0      AAAA 1680
consensus_12441#1      ----
consensus_12441#2      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)