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Oryza sativa
cluster # 12443 cluster # 12443       Sequences # 10       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12443#0 length = 2433 sequences # 8  
 consensus_12443#1 length = 434 sequences # 1  
consensus_12443#2 length = 340 sequences # 1  
consensusID : consensus_12443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2433
fasta sequence 
                              [AGAGTTCATCACGCAAGAAAAAGGTTTTGCCGGAGGCTGGAAAGAAGGAGATTATGGATGGGGAAGGTTCTGTGCCAAGTATAGGGGCAACAGAAGATACATTAAGTAAAACAAAGAAGTCGAAGAACCAGAACTGTGCAGCAAAGAAGAACAGAAACACCTCAAAAGATGCAGATGGGCTTGATATGGATGACAAAGGTTCTGTGCCAAGTAAAGGGGCAACAGTTGATACATCGAGACAAATAAAGAAGTCAAAGAACCAGAACAGTGCAGTAAATAAGAATAAAAACACCTCAAAAGATGCAGATGGGCTTGATATGGATGGCGAAGGTTCTGTGCCAAGTAAAGGGGCAACAGATGATGCATCGAGTAAAACAAAGAAGTCAAAGAACCAGAACAATTCAGCAAAGAAGAACAAAAACACCTCAAAGATGCAGATGGGCTTGATATGGATGACAAAGGTTCTGTGCCAAGGAAAGGGGCAACTGATGATACATCGATTAAAACAAAGAAGTCAAAGAACAAGAACAGATCAGCAAAGAAGAACAAAAACACCTCAAAAGATGCAGATGGGCTTGAAACAGTTGGTGCAAGCAAAAAACTGTCCAAGAAGGCTGTGGATGAAACCTTGAGTGACAGCAAATCAGCACGCAGAACAAGATCAACACGCATGAAGGGAGGCACCCCGGTAGCCTTGAAAGGCAGGGGAAAGGATAGTGGTGCTGAATCCTTAAAGGTGGAAGAGAAGAATACTGCTTTGCTCAAGGAGAATAAGGTGGGGCGTAGAGCTGGCTCTGCACGCAAGAAGTATAAAACCACAGGGGATGGGGACGGACTTGAAGATGGCAATGCCAATGTTTCTGTTTCTTCTGGCAAGAGGTCAACGCGTGGTGAAACCTCGGTAGTTTCAGAAGCGCGAATCTCAGAGCAGGGTAGGAAGAAGAAGAAACTTTCTGAACTTATGGCAGTGACAGATGTGCCTAATCCTTCTTCTGGTGGTAAAAGCAAGGCTCGAGGCAAGCGTTCTATGGATGCATCAACTGAGAAACTTGAGGATCCTGATCGTGATTTGGAGGATACAATGAAGACTAGGAAAAGAAAGAAACTTGACACATTGGGGGATTTGTCTTCCCAGCCACAGCCTGTCTCCCGCAAGAGCACTACAAAGGTTGGAGAATTGATGCACAAAGCTGCTGGACAAATGTCACAGACACGACCCGTTCGCAAAGCTAATGGCGCAGTATCTCAGAAGAATTCTCGTAGCACTAAAGAAAGACAAGTAAATGCTCCAGACAAGTCTGCACATTCTCTGAAGGTGAAAAAGGGCAAGACTGATACCTTGACAGAAAATTCCCT-GTCTTGTTCTGAAATGCTGTCACAGCTCTCCCTAGCAGTATTTAATCTTAAGAAAAAGGAGAGATTTTCCAGTGCAGGCATGAACTTCTTTACTGATTTCAGGAAGTACTCGTATGCTTCTAGGTCTGATGTTGAGAAGGAGATATATGGGAAGGCAACTAACACTGGATCCTGTGCTTCATTTTCTGATGTTGATGAGGATATTCCTGAGAAAGCTGCCAGCACTGAGCCCACTCCTTTGGAACAGCCCTTGGCTGATCATATGCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAGAAAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAACATGTTAAAAAACCTGCCATGAAATCATCATCACTGGGAAATATAGAGGGACCAACTGTTGAAGGTTCAGAGAACAAGCAACCGAATGCAGAAACACAACTGAGTGTTGCAAATGGAACTAAAGTAAGTTCTGAAGAAACGGAAAGTTCCTCATTTGCTGGACTAGTGCTGCACTTCAGCAGGCCAGGTGCTGTTCCGTCACGCAGTGACCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGCAGAGACTGCAAACAATGCTAACTGCGCTCAGGTGATCTTCAAGAGGCGCATGGATGCTGAGGCAGCATTTGCAGGCGCAGGGAAAATCGGTGCTCTTGGACCAGCTCTTGTTAGCTTTCGCCTCTCCGACTTCCCAGCCGCTGCCTCAGGAAATGATCCTCGG-CAGGGTGCATCGAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGG--TGGTA-GATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCAGGTCAGATCAGTGACCAATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTA-TACCTAAAAAGTTGAGCTTAATTTGTCAATGTGAGTAGC]

[+] EMBL AK068734             [AGAGTTCATCACGCAAGAAAAAGGTTTTGCCGGAGGCTGGAAAGAAGGAGATTATGGATGGGGAAGGTTCTGTGCCAAGTATAGGGGCAACAGAAGATACATTAAGTAAAACAAAGAAGTCGAAGAACCAGAACTGTGCAGCAAAGAAGAACAGAAACACCTCAAAAGATGCAGATGGGCTTGATATGGATGACAAAGGTTCTGTGCCAAGTAAAGGGGCAACAGTTGATACATCGAGACAAATAAAGAAGTCAAAGAACCAGAACAGTGCAGTAAATAAGAATAAAAACACCTCAAAAGATGCAGATGGGCTTGATATGGATGGCGAAGGTTCTGTGCCAAGTAAAGGGGCAACAGATGATGCATCGAGTAAAACAAAGAAGTCAAAGAACCAGAACAATTCAGCAAAGAAGAACAAAAACACCTCAAAGATGCAGATGGGCTTGATATGGATGACAAAGGTTCTGTGCCAAGGAAAGGGGCAACTGATGATACATCGATTAAAACAAAGAAGTCAAAGAACAAGAACAGATCAGCAAAGAAGAACAAAAACACCTCAAAAGATGCAGATGGGCTTGAAACAGTTGGTGCAAGCAAAAAACTGTCCAAGAAGGCTGTGGATGAAACCTTGAGTGACAGCAAATCAGCACGCAGAACAAGATCAACACGCATGAAGGGAGGCACCCCGGTAGCCTTGAAAGGCAGGGGAAAGGATAGTGGTGCTGAATCCTTAAAGGTGGAAGAGAAGAATACTGCTTTGCTCAAGGAGAATAAGGTGGGGCGTAGAGCTGGCTCTGCACGCAAGAAGTATAAAACCACAGGGGATGGGGACGGACTTGAAGATGGCAATGCCAATGTTTCTGTTTCTTCTGGCAAGAGGTCAACGCGTGGTGAAACCTCGGTAGTTTCAGAAGCGCGAATCTCAGAGCAGGGTAGGAAGAAGAAGAAACTTTCTGAACTTATGGCAGTGACAGATGTGCCTAATCCTTCTTCTGGTGGTAAAAGCAAGGCTCGAGGCAAGCGTTCTATGGATGCATCAACTGAGAAACTTGAGGATCCTGATCGTGATTTGGAGGATACAATGAAGACTAGGAAAAGAAAGAAACTTGACACATTGGGGGATTTGTCTTCCCAGCCACAGCCTGTCTCCCGCAAGAGCACTACAAAGGTTGGAGAATTGATGCACAAAGCTGCTGGACAAATGTCACAGACACGACCCGTTCGCAAAGCTAATGGCGCAGTATCTCAGAAGAATTCTCGTAGCACTAAAGAAAGACAAGTAAATGCTCCAGACAAGTCTGCACATTCTCTGAAGGTGAAAAAGGGCAAGACTGATACCTTGACAGAAAATTCCCT GTCTTGTTCTGAAATGCTGTCACAGCTCTCCCTAGCAGTATTTAATCTTAAGAAAAAGGAGAGATTTTCCAGTGCAGGCATGAACTTCTTTACTGATTTCAGGAAGTACTCGTATGCTTCTAGGTCTGATGTTGAGAAGGAGATATATGGGAAGGCAACTAACACTGGATCCTGTGCTTCATTTTCTGATGTTGATGAGGATATTCCTGAGAAAGCTGCCGGCACTGAGCCCACTCCTTTGGAACAGCCCTTGGCTGATCATATGCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAGAAAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAACATGTTAAAAAACCTGCCATGAAATCATCATCACTGGGAAATATAGAGGGACCAACTGTTGAAGGTTCAGAGAACAAGCAACCGAATGCAGAAACACAACTGAGTGTTGCAAATGGAACTAAAGTAAGTTCTGAAGAAACGGAAAGTTCCTCATTTGCTGGACTAGTGCTGCACTTCAGCAGGCCAGGTGCTGTTCCGTCACGCAGTGACCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGCAGAGACTGCAAACAATGCTAACTGCGCTC TCTGATCTTCAAGAGGCGCATGGATGCTGAGGCAGCATTTGCAGGCGCAGGGAAAATCGGTGCTCTTGGACCAGCTCTTGTTAGCTTTCGCCTCTCCGACTTCCCAGCCGCTGCCTCAGGAAATGATCCTCGG CAGGGTGCATCGAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGG  TGGTA GATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCAGGTCAGATCAGTGACCAATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTA TACCTAAAAAGTTGAGC                      ]
[+] EMBL CB655908             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACCTTGAGTGACAGCAAATCAGCACGCAGAACAAGATCAACACGCATGAAGGGAGGCACCCCGGTAGCCTTGAAAGGCAGGGGAAAGGATAGTGGTGCTGAATCCTTAAAGGTGGAAGAGAAGAATACTGCTTTGCTCAAGGAGAATAAGGTGGGGCGTAGAGCTGGCTCTGCACGCAAGAAGTATAAAACCACAGGGGATGGGGACGGACTTGAAGATGGCAATGCCAATGTTTCTGTTTCTTCTGGCAAGAGGTCAACGCGTGGTGAAACCTCGGTAGCTTCAGAAGCGCGAATCTCAGAGCAGGGTAGGAAGAAGAAGAAACTTTCTGAACTTATGGCAGTGACAGATGTGCCTAATCCTTCTTCTGGTGGTAAAAGCAAGGCTCGAGGCAAGCGTTCTATGGATGCATCAACTGAGAAACTTGAGGATCCTGATCGTGATTTGGAGGATACAATGAAGACTAGGAAAAGAAAGAAACTTGACACATTGGGGGATTTGTCTTCCCAGCCACAGCCTGTCTCCCGCAAGAGCACTACAAAGGTTGGAGAATTGATGCACAAAGCTGCTGGACAAATGTCACAGACACGACCCGTTCGCAAAGCTAATGGCGCAGTATCTCAGAAGAATTCTCGTAGCACTAAAGAAAGACAAGTAAATGCTCCAGACAAGTCTGCACATTCTCTGAAGGTGAAAAAGGGCAAGACTGATACCTTGACAGAAAATTCCCT GTCTTGTTCTGAAATGCTGTCACAGCTCTCCCTAGCAGTATTTAATCTTAAGAAAAAAGAGAGATTTTCCAGTGCAGGCATGAACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI810400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACAAGTCTGCACATTCTCTGAAGGTGAAAAAGGGCAAGACTGATACCTTGACAGAAAATTCCCTGGTCTTGTTCTGAAATGCTGTCACAGCTCTCCCTA CAGTATTTAATCTTAAGAAAAAGGAGAGATTTTCCAGTGCAGGCATGAACTTCTTTACTGATTTCAGGAAGTACTCGTATGCTTCTAGGTCTGATGTTGAGAAGGAGATATATGGGAA GCAACTAACACTGGATCCTGTGCTTCATTTTCTGATGTTGATGAGGATATTCCTGAGAAA CTGCCAGCACTGAGCCCACTCCTTTGGAACAGCCCTTGGCTGATCATATGCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA762343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTGAGAAGGAGATATATGGGAAGGCAACTAACACTGGATCCTGTGCTTCATTTTCTGATGTTGATGAGGATATTCCTGAGAAAGCTGCCAGCACTGAGCCCACTCCTTTGGAACAGCCCTTGGCTGATCATATGCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAGAAAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA762344             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTGAGAAGGAGATATATGGGAAGGCAACTAACACTGGATCCTGTGCTTCATTTTCTGATGTTGATGAGGATATTCCTGAGAAAGCTGCCAGCACTGAGCCCACTCCTTTGGAACAGCCCTTGGCTGATCATATGCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAGAAAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB655909             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAGGAACCACTGTCTAGTCTCAGAAAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAACATGTTAAAAAACCTGCCATGAAATCATCATCACTGGGAAATATAGAGGGACCAACTGTTGAAGGTTCAGAGAACAAGCAACCGAATGCAGAAACACAACTGAGTGTTGCAAATGGAACTAAAGTAAGTTCTGAAGAAACGGAAAGTTCCTCATTTGCTGGACTAGTGCTGCACTTCAGCAGGCCAGGTGCTGTTCCGTCACGCAGTGACCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGCAGAGACTGCAAACAATGCTAACTGCGCTCAGGTGATCTTCAAGAGGCGCATGGATGCTGAGGCAGCATTTGCAGGCGCAGGGAAAATCGGTGCTCTTGGACCAGCTCTTGTTAGCTTTCGCCTCTCCGACTTCCCAGCCGCTGCCTCAGGAAATGATCCTCGG CAGGGTGCATCGAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGG  TGGTA GATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCAGGTCAGATCAGTGACCAATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTA TACCTAAAAAGTTGAGCTTAATTTGTCAATGTGAGTAGC]
[-] EMBL CB627008             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAACACAACTGAGTGTTGCAAATGGAATTAAAGTAAGTTCTGAAGAAACGGAAAGTTCCTCATTTGCTGGATTAGTGCTGCACTTCAGCAGGCCAGGTGTTGTTCCGTCACGCAGTGCCCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGCAGAGACTGCAAACAATGCTAACTGCGCTCAGGTGATCTTCAAGAGGCGCATGGATGTTGAGGCAGCATTTGCAGGCGCAGGGAAAATCGGTGTTTTTGGACCAGCTCTTGTTAGCTTTCGCCTTTCCGATTTCCCAGCCGCTGCCTCAGGAAATGATCCTCGG CAGGGTGCATCGAAGAGTGACTAGAGAGTGTTTCCCCCCCTGTTGACCCTGTTGATACTCGGTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTTTGTTAGG  CGGTA GATTGTTCCAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCAGGTCAGATCAGTGCCCAATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATTTA TCCCTAAAAAGTTGAGCT                     ]
[+] EMBL BQ909064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGCTGCACTTCAGCAGGCCAGGTGCTGTTCCGTCACGCAGTGACCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGCAGAGACTGCAAACAATGCTAACTGCGCTCAGGTGATCTTCAAGAGGCGCATGGATGCTGAGGCAGCATTTGCAGGCGCAGGGAAAATCGGTGCTCTTGGACCAGCTCTTGTTAGCTTTCGCCTCTCCGACTTCCCAGCCGCTGCCTCAGGAAATGATCCTCGGCCAGGGTGCATCGAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTACGCNCGGTACGATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCAGGTCAGATCAGTGACCAATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTACTACCTAAAAAGTTGAGCTTAAaaaaaaaa          ]




>consensus_12443#0
AGAGTTCATCACGCAAGAAAAAGGTTTTGCCGGAGGCTGGAAAGAAGGAGATTATGGATG
GGGAAGGTTCTGTGCCAAGTATAGGGGCAACAGAAGATACATTAAGTAAAACAAAGAAGT
CGAAGAACCAGAACTGTGCAGCAAAGAAGAACAGAAACACCTCAAAAGATGCAGATGGGC
TTGATATGGATGACAAAGGTTCTGTGCCAAGTAAAGGGGCAACAGTTGATACATCGAGAC
AAATAAAGAAGTCAAAGAACCAGAACAGTGCAGTAAATAAGAATAAAAACACCTCAAAAG
ATGCAGATGGGCTTGATATGGATGGCGAAGGTTCTGTGCCAAGTAAAGGGGCAACAGATG
ATGCATCGAGTAAAACAAAGAAGTCAAAGAACCAGAACAATTCAGCAAAGAAGAACAAAA
ACACCTCAAAGATGCAGATGGGCTTGATATGGATGACAAAGGTTCTGTGCCAAGGAAAGG
GGCAACTGATGATACATCGATTAAAACAAAGAAGTCAAAGAACAAGAACAGATCAGCAAA
GAAGAACAAAAACACCTCAAAAGATGCAGATGGGCTTGAAACAGTTGGTGCAAGCAAAAA
ACTGTCCAAGAAGGCTGTGGATGAAACCTTGAGTGACAGCAAATCAGCACGCAGAACAAG
ATCAACACGCATGAAGGGAGGCACCCCGGTAGCCTTGAAAGGCAGGGGAAAGGATAGTGG
TGCTGAATCCTTAAAGGTGGAAGAGAAGAATACTGCTTTGCTCAAGGAGAATAAGGTGGG
GCGTAGAGCTGGCTCTGCACGCAAGAAGTATAAAACCACAGGGGATGGGGACGGACTTGA
AGATGGCAATGCCAATGTTTCTGTTTCTTCTGGCAAGAGGTCAACGCGTGGTGAAACCTC
GGTAGTTTCAGAAGCGCGAATCTCAGAGCAGGGTAGGAAGAAGAAGAAACTTTCTGAACT
TATGGCAGTGACAGATGTGCCTAATCCTTCTTCTGGTGGTAAAAGCAAGGCTCGAGGCAA
GCGTTCTATGGATGCATCAACTGAGAAACTTGAGGATCCTGATCGTGATTTGGAGGATAC
AATGAAGACTAGGAAAAGAAAGAAACTTGACACATTGGGGGATTTGTCTTCCCAGCCACA
GCCTGTCTCCCGCAAGAGCACTACAAAGGTTGGAGAATTGATGCACAAAGCTGCTGGACA
AATGTCACAGACACGACCCGTTCGCAAAGCTAATGGCGCAGTATCTCAGAAGAATTCTCG
TAGCACTAAAGAAAGACAAGTAAATGCTCCAGACAAGTCTGCACATTCTCTGAAGGTGAA
AAAGGGCAAGACTGATACCTTGACAGAAAATTCCCTGTCTTGTTCTGAAATGCTGTCACA
GCTCTCCCTAGCAGTATTTAATCTTAAGAAAAAGGAGAGATTTTCCAGTGCAGGCATGAA
CTTCTTTACTGATTTCAGGAAGTACTCGTATGCTTCTAGGTCTGATGTTGAGAAGGAGAT
ATATGGGAAGGCAACTAACACTGGATCCTGTGCTTCATTTTCTGATGTTGATGAGGATAT
TCCTGAGAAAGCTGCCAGCACTGAGCCCACTCCTTTGGAACAGCCCTTGGCTGATCATAT
GCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAG
AAAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAACATGTTAAAAAACCTGC
CATGAAATCATCATCACTGGGAAATATAGAGGGACCAACTGTTGAAGGTTCAGAGAACAA
GCAACCGAATGCAGAAACACAACTGAGTGTTGCAAATGGAACTAAAGTAAGTTCTGAAGA
AACGGAAAGTTCCTCATTTGCTGGACTAGTGCTGCACTTCAGCAGGCCAGGTGCTGTTCC
GTCACGCAGTGACCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGC
AGAGACTGCAAACAATGCTAACTGCGCTCAGGTGATCTTCAAGAGGCGCATGGATGCTGA
GGCAGCATTTGCAGGCGCAGGGAAAATCGGTGCTCTTGGACCAGCTCTTGTTAGCTTTCG
CCTCTCCGACTTCCCAGCCGCTGCCTCAGGAAATGATCCTCGGCAGGGTGCATCGAAGAG
TGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGGTGAAGGAGCT
GAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTACAGGATTAAGCATTCATAGG
AACAAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCAGGTCAGA
TCAGTGACCAATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTATACCTA
AAAAGTTGAGCTTAATTTGTCAATGTGAGTAGC

consensusID : consensus_12443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence 
                              [AGGCGCCATGGATGCTGAGGCAGCATTTGCCAGGCGCCACGGGAAAATCGGTGCTCTTGGACCAGCTCTTGTTAGCTTTCGNCCTTCTCCGACTTCCCACGCCGCCTGCCCTCACGGAAATGATCCTCGGCCACGGGTGCACTCGAAGAGTGACTAGAGAGTGTTTACCCACCCTCGTTGAACCCTCGTTGATACTCCGGTGAGGTGAAGGAGCCTGAGTTAGTCACGAAAAATGTCTGTTAGGCCGGTAGATTGTTACCACGGATTAAGCATTCACTAGGAACCAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCCAGGTCAGATCAGTGACCNATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTATACCTAAAAAGTTGAGCTTAATTTGTCCAAAAAAAAAA]

[+] EMBL BQ908212             [AGGCGCCATGGATGCTGAGGCAGCATTTGCCAGGCGCCACGGGAAAATCGGTGCTCTTGGACCAGCTCTTGTTAGCTTTCGNCCTTCTCCGACTTCCCACGCCGCCTGCCCTCACGGAAATGATCCTCGGCCACGGGTGCACTCGAAGAGTGACTAGAGAGTGTTTACCCACCCTCGTTGAACCCTCGTTGATACTCCGGTGAGGTGAAGGAGCCTGAGTTAGTCACGAAAAATGTCTGTTAGGCCGGTAGATTGTTACCACGGATTAAGCATTCACTAGGAACCAAAGGTTGTGCATTTGTCATGTAAACATGTGATTGTTAAGCTGTCCGCCAGGTCAGATCAGTGACCNATAAAATAGGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTATACCTAAAAAGTTGAGCTTAATTTGTCCAAAAAAAAAA]




>consensus_12443#1
AGGCGCCATGGATGCTGAGGCAGCATTTGCCAGGCGCCACGGGAAAATCGGTGCTCTTGG
ACCAGCTCTTGTTAGCTTTCGNCCTTCTCCGACTTCCCACGCCGCCTGCCCTCACGGAAA
TGATCCTCGGCCACGGGTGCACTCGAAGAGTGACTAGAGAGTGTTTACCCACCCTCGTTG
AACCCTCGTTGATACTCCGGTGAGGTGAAGGAGCCTGAGTTAGTCACGAAAAATGTCTGT
TAGGCCGGTAGATTGTTACCACGGATTAAGCATTCACTAGGAACCAAAGGTTGTGCATTT
GTCATGTAAACATGTGATTGTTAAGCTGTCCGCCAGGTCAGATCAGTGACCNATAAAATA
GGCTGGCTCTGTAAGAACATGTTGTAAGCTGATCTATACCTAAAAAGTTGAGCTTAATTT
GTCCAAAAAAAAAA

consensusID : consensus_12443#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence 
                              [CGCTCAAGGTGATCGTCAAGAGGCGCATGGATCATAGAGGCAGCATTTGCAGGCTCAGGGACAACATCGGTGCTCTTGGACCAAGCTTCTTGTTTAGCTTTCTGCACTCTCCGGACTTTCCCAGCCGTCATGCCTCAGGAGAACTCGATCCTCGGACACGGGCTGCATCGTAAGACGTGATCTAGAGACGTGGTTTACCCACCCGTTGAACCTGTTGATACTCGGTGAAGGACGTCTGAGTTAGTCAGAACAATGTCTGTTAGATCGGTAGATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGATGCATTTGTCATGTAAACATGTGATTGTT]

[+] EMBL BI807981             [CGCTCAAGGTGATCGTCAAGAGGCGCATGGATCATAGAGGCAGCATTTGCAGGCTCAGGGACAACATCGGTGCTCTTGGACCAAGCTTCTTGTTTAGCTTTCTGCACTCTCCGGACTTTCCCAGCCGTCATGCCTCAGGAGAACTCGATCCTCGGACACGGGCTGCATCGTAAGACGTGATCTAGAGACGTGGTTTACCCACCCGTTGAACCTGTTGATACTCGGTGAAGGACGTCTGAGTTAGTCAGAACAATGTCTGTTAGATCGGTAGATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGATGCATTTGTCATGTAAACATGTGATTGTT]




>consensus_12443#2
CGCTCAAGGTGATCGTCAAGAGGCGCATGGATCATAGAGGCAGCATTTGCAGGCTCAGGG
ACAACATCGGTGCTCTTGGACCAAGCTTCTTGTTTAGCTTTCTGCACTCTCCGGACTTTC
CCAGCCGTCATGCCTCAGGAGAACTCGATCCTCGGACACGGGCTGCATCGTAAGACGTGA
TCTAGAGACGTGGTTTACCCACCCGTTGAACCTGTTGATACTCGGTGAAGGACGTCTGAG
TTAGTCAGAACAATGTCTGTTAGATCGGTAGATTGTTACAGGATTAAGCATTCATAGGAA
CAAAAGGTTGATGCATTTGTCATGTAAACATGTGATTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12443#0      AGAGTTCATCACGCAAGAAAAAGGTTTTGCCGGAGGCTGGAAAGAAGGAGATTATGGATG 60
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GGGAAGGTTCTGTGCCAAGTATAGGGGCAACAGAAGATACATTAAGTAAAACAAAGAAGT 120
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      CGAAGAACCAGAACTGTGCAGCAAAGAAGAACAGAAACACCTCAAAAGATGCAGATGGGC 180
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      TTGATATGGATGACAAAGGTTCTGTGCCAAGTAAAGGGGCAACAGTTGATACATCGAGAC 240
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AAATAAAGAAGTCAAAGAACCAGAACAGTGCAGTAAATAAGAATAAAAACACCTCAAAAG 300
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      ATGCAGATGGGCTTGATATGGATGGCGAAGGTTCTGTGCCAAGTAAAGGGGCAACAGATG 360
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      ATGCATCGAGTAAAACAAAGAAGTCAAAGAACCAGAACAATTCAGCAAAGAAGAACAAAA 420
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      ACACCTCAAAGATGCAGATGGGCTTGATATGGATGACAAAGGTTCTGTGCCAAGGAAAGG 480
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GGCAACTGATGATACATCGATTAAAACAAAGAAGTCAAAGAACAAGAACAGATCAGCAAA 540
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GAAGAACAAAAACACCTCAAAAGATGCAGATGGGCTTGAAACAGTTGGTGCAAGCAAAAA 600
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      ACTGTCCAAGAAGGCTGTGGATGAAACCTTGAGTGACAGCAAATCAGCACGCAGAACAAG 660
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      ATCAACACGCATGAAGGGAGGCACCCCGGTAGCCTTGAAAGGCAGGGGAAAGGATAGTGG 720
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      TGCTGAATCCTTAAAGGTGGAAGAGAAGAATACTGCTTTGCTCAAGGAGAATAAGGTGGG 780
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GCGTAGAGCTGGCTCTGCACGCAAGAAGTATAAAACCACAGGGGATGGGGACGGACTTGA 840
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AGATGGCAATGCCAATGTTTCTGTTTCTTCTGGCAAGAGGTCAACGCGTGGTGAAACCTC 900
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GGTAGTTTCAGAAGCGCGAATCTCAGAGCAGGGTAGGAAGAAGAAGAAACTTTCTGAACT 960
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      TATGGCAGTGACAGATGTGCCTAATCCTTCTTCTGGTGGTAAAAGCAAGGCTCGAGGCAA 1020
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GCGTTCTATGGATGCATCAACTGAGAAACTTGAGGATCCTGATCGTGATTTGGAGGATAC 1080
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AATGAAGACTAGGAAAAGAAAGAAACTTGACACATTGGGGGATTTGTCTTCCCAGCCACA 1140
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GCCTGTCTCCCGCAAGAGCACTACAAAGGTTGGAGAATTGATGCACAAAGCTGCTGGACA 1200
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AATGTCACAGACACGACCCGTTCGCAAAGCTAATGGCGCAGTATCTCAGAAGAATTCTCG 1260
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      TAGCACTAAAGAAAGACAAGTAAATGCTCCAGACAAGTCTGCACATTCTCTGAAGGTGAA 1320
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AAAGGGCAAGACTGATACCTTGACAGAAAATTCCCTGTCTTGTTCTGAAATGCTGTCACA 1380
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GCTCTCCCTAGCAGTATTTAATCTTAAGAAAAAGGAGAGATTTTCCAGTGCAGGCATGAA 1440
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      CTTCTTTACTGATTTCAGGAAGTACTCGTATGCTTCTAGGTCTGATGTTGAGAAGGAGAT 1500
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      ATATGGGAAGGCAACTAACACTGGATCCTGTGCTTCATTTTCTGATGTTGATGAGGATAT 1560
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      TCCTGAGAAAGCTGCCAGCACTGAGCCCACTCCTTTGGAACAGCCCTTGGCTGATCATAT 1620
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAG 1680
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AAAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAACATGTTAAAAAACCTGC 1740
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      CATGAAATCATCATCACTGGGAAATATAGAGGGACCAACTGTTGAAGGTTCAGAGAACAA 1800
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GCAACCGAATGCAGAAACACAACTGAGTGTTGCAAATGGAACTAAAGTAAGTTCTGAAGA 1860
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AACGGAAAGTTCCTCATTTGCTGGACTAGTGCTGCACTTCAGCAGGCCAGGTGCTGTTCC 1920
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      GTCACGCAGTGACCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGC 1980
consensus_12443#1      ------------------------------------------------------------
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AGAGACTGCAAACAATGCTAACTGCGCTCAGGTGATCTTCAAGAGGCGC-ATGGATGCT- 2038
consensus_12443#1      -------------------------------------------AGGCGCCATGGATGCT- 16
consensus_12443#2      -----------------------CGCTCAAGGTGATCGTCAAGAGGCGC-ATGGATCATA 36
                                                                  ****** ******  * 

consensus_12443#0      GAGGCAGCATTTGC-AGGCGCA--GGGAAAATCGGTGCTCTTGGACCAG--CTCTTGTT- 2092
consensus_12443#1      GAGGCAGCATTTGCCAGGCGCCACGGGAAAATCGGTGCTCTTGGACCAG--CTCTTGTT- 73
consensus_12443#2      GAGGCAGCATTTGC-AGGCTCAGGGACAACATCGGTGCTCTTGGACCAAGCTTCTTGTTT 95
                       ************** **** *   *  ** ******************    ******* 

consensus_12443#0      AGCTTTCGCC--TCTCCG-ACTTCCCA-GCCGCTG--CCTCA-GGAAAT--GATCCTCGG 2143
consensus_12443#1      AGCTTTCGNCCTTCTCCG-ACTTCCCACGCCGCCTGCCCTCACGGAAAT--GATCCTCGG 130
consensus_12443#2      AGCTTTCTGCACTCTCCGGACTTTCCCAGCCGTCATGCCTCAGGAGAACTCGATCCTCGG 155
                       *******  *  ****** **** **  ****     ***** *  **   *********

consensus_12443#0      CA--GGG-TGCA-TCGAAGA-GTGA-CTAGAGA-GTG-TTTACCCACCT--GTTGAACCT 2193
consensus_12443#1      CCACGGG-TGCACTCGAAGA-GTGA-CTAGAGA-GTG-TTTACCCACCCTCGTTGAACCC 185
consensus_12443#2      ACACGGGCTGCATCGTAAGACGTGATCTAGAGACGTGGTTTACCCACCC--GTTGAACCT 213
                           *** ****    **** **** ******* *** **********   ******** 

consensus_12443#0      --GTTGATACTC-GGTGAGGTGAAGGA-GC-TGAGTTAGTCA-GAAAAATGTCTGTTAGG 2247
consensus_12443#1      TCGTTGATACTCCGGTGAGGTGAAGGA-GCCTGAGTTAGTCACGAAAAATGTCTGTTAGG 244
consensus_12443#2      --GTTGATACTC------GGTGAAGGACGTCTGAGTTAGTCA-GAACAATGTCTGTTAGA 264
                         **********      ********* *  *********** *** ************ 

consensus_12443#0      T-GGTAGATTGTTACA--GGATTAAGCATTCA-TAGGAACAAAAGGTTG-TGCATTTGTC 2302
consensus_12443#1      CCGGTAGATTGTTACCACGGATTAAGCATTCACTAGGAACCAAAGGTTG-TGCATTTGTC 303
consensus_12443#2      TCGGTAGATTGTTACA--GGATTAAGCATTCA-TAGGAACAAAAGGTTGATGCATTTGTC 321
                         *************   ************** ******* ******** **********

consensus_12443#0      ATGTAAACATGTGATTGTTAAGCTGTCCGC-AGGTCAGATCAGTGACCAATAAAATAGGC 2361
consensus_12443#1      ATGTAAACATGTGATTGTTAAGCTGTCCGCCAGGTCAGATCAGTGACCNATAAAATAGGC 363
consensus_12443#2      ATGTAAACATGTGATTGTT----------------------------------------- 340
                       *******************                                         

consensus_12443#0      TGGCTCTGTAAGAACATGTTGTAAGCTGATCTATACCTAAAAAGTTGAGCTTAATTTGTC 2421
consensus_12443#1      TGGCTCTGTAAGAACATGTTGTAAGCTGATCTATACCTAAAAAGTTGAGCTTAATTTGTC 423
consensus_12443#2      ------------------------------------------------------------
                                                                                   

consensus_12443#0      AATGTGAGTAGC 2433
consensus_12443#1      CAAAAAAAAAA- 434
consensus_12443#2      ------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)