|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1419 fasta sequence
[GCCGCTGTTTTGTACCTCGGGAAGGAAAGAATTTAACCAATTACAGTACATCACTCACAAAAGAACATGCATACATACATAGATCACATTAGAAAGGGACATATGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCCATCACGACAGGATATTGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCTGGCATGGTTAAAGTATGGGGCAACAATTTCAGCTCAGAAAAGGGCAAAAACAT-TGCTATGATTTTCACACGGCATTACTGGGAGTATTGACATTGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAGCAATGCCTGCACAGGATTTCACGCCAATAACGGCGATGTCTTGGAGTACTTCCCATGTACCATATGAGTACTGAACATTTGC-AGACACA-GTCAGTTCCTAA-TGTACAGGTCAGTCATTCATCAACTTTTGTCCCAAACTTTTCAGCCAAGAAATCAT-CAAGAAGACCATAATTCGGAATA-GCTTCTGCACTGAAGTTCTCAGCAGGCAACTTCCGAATGCATACAAGAATATGTTGGACATCACGGCACAATCTGTTCTTTGCCTGAGGTGTACTGAGTTCTAACTTCGAAAATGCTTCTGTGATATGTGAATGGAATATTTGAACTACTTGCCTGAATATCAATTGCACATCTGCCTCAAGCAATGTTTGAGAAAGGATGCGATGCAAGTAACTAACTTCCTTCGTAACAGCCTTGGCAAATTGACTTGGCTGCAAATCAGTATCTTCAGGCCCATTCCAACTTTCCACAATTTGCGGTAATTTTCTCAGATTTGCTAGTAATCTCTCTCTCATTATCTGGACTAGCTTGGTGTGAATTTCATCTCGATGAATCTTGTAATCCTGAGTCACTCTATCCAGTTCAGACATTAACAGTTGTTTGCGTGCCTCGGGTATTTTCAGGAAAAGTACACGCCGGATATCTGGAATTAAAGAATATATAAAGCTGATTATCTGACTTGCCAAAGCTAAATGCTTAGACGTAATTGATTTCAGACCAGACACCTGCATGGCACCTGCACCAAGAACCAGTTGGCACGTCCTAGTGTTGAAGAGCTTCAATATTTCAACAACACGTTGGACCACCTCAAAAGATAATGATGGCAAGCATTTACTGATGTCAACATATTCCGATAACATCTTCAACAATATCAAACCA]
[+] EMBL AU225191 [GCCGCTGTTTTGTACCTCGGGAAGGAAAGAATTTAACCAATTACAGTACATCACTCACAAAAGAACATGCATACATACATAGATCACATTAGAAAGGGACATATGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCCATCACGACAGGATATTGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACA ]
[+] EMBL CB661419 [ tcttttTTTTG ACCTCGGGAAGGAAAGAATTTAACCAATTACAGTACATCACTCACAAAAGAACATGCATACATACATAGATCACATTAGAAAGGGACATATGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCCATCACGACAGGATATTGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCTGGCATGGTTAAAGTATGGGGCAACAATTTCAGCTCAGAAAAGGGCAAAAACAT TGCTATGATTTTCACACGGCATTACTGGGAGTATTGACATTGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAGCAATGCCTGCACAGGATTTCACGCCAATAACGGCGATGTCTTGGAGTACTTCCCATGTACCATATGAGTACTGAACATTTGC AGACACA GTCAGTTCCTAA TGTACAGGTCAGTCATTCATCAACTTTTGTCCCAAACTTTTCAGCCAAGAAATCAT CAAGAAGACCATAATTCGGAATA GCTTCTGCACTGAAGTTCTCAGCAGGCAACTTCCGAATGCATACAAGAATATGTTGGACATCACGGCACAATCTGTTCTTTGCCTGANGTGTACT ]
[+] EMBL CB675618 [ AAAAGAACATGCATACATACATAGATCACATTACAAAGGGACATATGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAAACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCCATCACGACAGGATATTGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCTGGCATGGTTAAAGTATGGGGCAACAATTTCAGCTCAAAAAAGGGCAAAAACAT TGCTATGATTTTCACACGGCATTACTGGGAGTATTGACATTGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAGCAATGCCTGCACAGGATTTCACGCCAATAACGGCGATGTCTTGGAGTACTTCCCATGTACCATATGAGTACTGAACATTTGC AGACACA GTCAGTTCCTAA TGTACAGGTCAGTCATTCATCAACTTTTGTCCCAAACTTTTCAGCCAAGAAATCAT CAAGAAGACCATAATTCGGAATA GCTTCTGCACTGAAGTTCTCAGCAGGCAACTTCCGAATGCATACAAGAATATGTTGGACATCACGGCACAATCTGTTCTTTGCCTGAGGTGTACTGAGTTCTAACTTCGAAAATGCTTCTGTGATATGTGAATGGAATATTT ]
[-] EMBL BI811780 [ tttttTTAGAAAGGGACATATGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCCATCACGACAGGATATGGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCTGGCATGGTTAAAGTATGGGGCAACAATTTCAGCTCAGAAAAGGGCAAAAACAT TGCTATGATTTTCACACGGCATTACTGGGAGTATTGACATTGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAGCAATGCCTGCACAGGATTTCACGCCAATAATGGCGATGTCTTGGAGTACTTCCCATGTACCATATGAGTACTGAACATTTGCGAGACA ]
[-] EMBL BI805586 [ agcttttTGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTG CATCACGACAGGATATTGAATACACCAGA CTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCT GCATGGTTAAAGTATGGGGCAACAATTTCAGCTCAGAAAAGGGCAAAAACATNTG TATGATTTTCACACGGCATTACTGGGAGTATTGACATTGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAGCAATGCCTGCACAGGATTTCACGCCAATAACGGGGATGTCTTGGAGTACTTCCCATGTACCATATGAGTACTGAACATTTGC AGACACAGGTCAGTTCCTAAGTGTACNGGTCAGTCATTCATCAACTTTTGTCCCAAACTTTTCAG CAAGAAATCATCCAAGAAGACCATAATTCGGAATAGGCTTC ]
[-] EMBL BQ908217 [ ttttTGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCCATCACGACAGGATATTGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCTGGCATGGTTAAAGTATGGGGCAACAATTTCAGCTCAGAAAAGGGCAAAAACAT TGCTATGATTTTCACACGGCATTACTGGGAGTATTGACA TGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAGCAATGCCTGCACAGGATTTCACGCCAATAATGGCGATGTCTTGGAGTACTTCCCATGTACCATATGAGTACTGAACATTTGC AGACACA GTCAGTTCCTAA TGTACAGGTCAGTCA ]
[+] EMBL CB628958 [ TGTAGTAATCTTCAATTTCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCTTATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCCATCACGACAGGATATTGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATAGATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCCCCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCTGGCATGGTTAAAGTATGGGGCAACAATTTCAGCTCAGAAAAGGGCAAAAACAT TGCTATGATTTTCACACGGCATTACTGGGAGTATTGACATTGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAGCAATGCCTGCACAGGATTTCACGCCAATAATGGCGATGTCTTGGAGTACTTCCCATGTACCATATGAGTACTGAACATTTGC AGACACA GTCAGTTCCTAA TGTACAGGTCAGTCATTCATCAACTTTTGTCCCAAACTTTTCAGCCAAGAAATCAT CAAGAAGACCATAATTCGGAATA GCTTCTGCACTGAAGTTCTCAGCAGGCAACTTCCGAATGCATACAAGAATATGTTGGACATCACGGCACAATCTGTTCTTTGCCTGAGGTGTACTGAGTTCTAACTTCGAAAATGCTTCTGTGATATGTGAATGGAATATTTGAACTACTTGCCTGAATATCAATTGCACATCTGCCTCAAGCAATGTTTGAGAAAGGATGCGATGCAAGTAACTAACTTCCTTCGTAACAGCCTTGGCAAATTGACT ]
[+] EMBL AI978315 [ TATATATCCATGCATGGCTGGAATCTTTTCNTATTCTAACATTTAAAAATAC ]
[-] EMBL CB661418 [ CATATGAGTACTGAACATTTGC AGACACA GTCAGTTCNTAA TGTACAGGTCAGTCATTCATCAACTTTTGTCCCAAACTTTTCAGCCAAGAAATCAT CAAGAAGACCATAATTCGGAATA GCTTCTGCACTGAAGTTCTCAGCAGGCAACTTCCGAATGCATACAAGAATATGTTGGACATCACGGCACAATCTGTTCTTTGCCTGAGGTGTACTGAGTTCTAACTTCGAAAATGCTTCTGTGATATGTGAATGGAATATTTGAACTACTTGCCTGAATATCAATTGCACATCTGCCTCAAGCAATGTTTGAGAAAGGATGCGATGCAAGTAACTAACTTCCTTCGTAACAGACTTGGCAAATTGACTTGGCTGCAAATCAGTATCTTCAGGCCCATTCCAACTTTCCACAATTTGCGGTAATTTTCTCAGATTTGCTAGTAATCTCTCTCTCATTATCTGGACTAGCTTGGTGTGAATTTCATCTCGATGAATCTTGTAATCCTGAGTCACTCTATCCAGTTCAGACATTAACAGTTGTTTGCGTGCCTCGGGTATTTTCAGGAAAAGTACACGCCGGATATCTGGAATTAAAGAATATATAAAGCTGATTATCTGACTTGCCAAAGCTAAATGCTTAGACGTAATTGATTTCAGACCAGACACCTGCATGGCACCTGCACCAAGAACCAGTTGGCACGTCCTAGTGTTGAAGAGCTTCAATATTTCAACAACACGTTGGACCACCTCAAAAGATAATGATGGCAAGCATTTACTGATGTCAACATATTCCGATAACATCTTCAACAATATCAAACCA]
consensusID : consensus_12453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[ATWYCCTTCMGCACTGAAGMTRCTKCYGCAGGCAACTTCCGAAWMGCAATACAAGAAWTHTGTMGGACATCCACGGCACAATCRMGTTCTTTVGCCTAGGGGMYCDACHGYGTRCTAACTTCCGAAAAWCGCTTCTGTGATATGTGAAHGYAATATTTGAACTACTTSSCCTGAATATCAATTGCACRATCTGCCTCAAGCAATGTTTGAGAAAGGATGCGATGCAAGTAACTAACTTCRTCGTAACAGACTTGGCAAATTGACTTGGCTGCAAATCAGTATCTTCAGGCCCATTCCAACTTTCCACAATTTGCGGTAATTTTCTCAGATTTGCTAGTAATCTCTCTCTCATTATCTGGACTAGCTTGGTGTGAATTTCATCTCGATGAATCTTGTAATCCTGAGTCACTCTATCCAGTTCAGACATTAACAGTTGTTTGC]
[-] EMBL AA752519 [ATWYCCTTCMGCACTGAAGMTRCTKCYGCAGGCAACTTCCGAAWMGCAATACAAGAAWTHTGTMGGACATCCACGGCACAATCRMGTTCTTTVGCCTAGGGGMYCDACHGYGTRCTAACTTCCGAAAAWCGCTTCTGTGATATGTGAAHGYAATATTTGAACTACTTSSCCTGAATATCAATTGCACRATCTGCCTCAAGCAATGTTTGAGAAAGGATGCGATGCAAGTAACTAACTTCRTCGTAACAGACTTGGCAAATTGACTTGGCTGCAAATCAGTATCTTCAGGCCCATTCCAACTTTCCACAATTTGCGGTAATTTTCTCAGATTTGCTAGTAATCTCTCTCTCATTATCTGGACTAGCTTGGTGTGAATTTCATCTCGATGAATCTTGTAATCCTGAGTCACTCTATCCAGTTCAGACATTAACAGTTGTTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12453#0 GCCGCTGTTTTGTACCTCGGGAAGGAAAGAATTTAACCAATTACAGTACATCACTCACAA 60
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 AAGAACATGCATACATACATAGATCACATTAGAAAGGGACATATGTAGTAATCTTCAATT 120
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 TCCTGTTATATATCCATGCATGGCTGGAATCTTTTCCTATTCTAACATTTAAAAATACCT 180
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 TATTATCTCATTCATCAGACTAATTACAAAACCTTACATGAACAAAATACATGGGCTGCC 240
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 ATCACGACAGGATATTGAATACACCAGACCTACACAGCAAGAAGCATGCTGCAATGAATA 300
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 GATCGTGATGCCAAAACTCAGTTCCCTCTATACGAACTTCTAGTAACAAATATCGGGTCC 360
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 CCAAAAAGGGATGGAACAATTAAAAAATTGAAATGCAGCCTGGCATGGTTAAAGTATGGG 420
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 GCAACAATTTCAGCTCAGAAAAGGGCAAAAACATTGCTATGATTTTCACACGGCATTACT 480
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 GGGAGTATTGACATTGTACTCCGCTGTCATTTAAGTGCTATGTACTTGTATCCTGGGGAG 540
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 CAATGCCTGCACAGGATTTCACGCCAATAACGGCGATGTCTTGGAGTACTTCCCATGTAC 600
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 CATATGAGTACTGAACATTTGCAGACACAGTCAGTTCCTAATGTACAGGTCAGTCATTCA 660
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 TCAACTTTTGTCCCAAACTTTTCAGCCAAGAAATCATCAAGAAGACCATAATTCGGAATA 720
consensus_12453#1 --------------------------------------------------------ATWY 4
*
consensus_12453#0 GCTTCTGCACTGAAGTT--CTCAGCAGGCAACTTCCGAAT-GCA-TACAAGAAT-ATGTT 775
consensus_12453#1 CCTTCMGCACTGAAGMTRCTKCYGCAGGCAACTTCCGAAWMGCAATACAAGAAWTHTGTM 64
**** ********* * * **************** *** ******** ***
consensus_12453#0 GGACATC-ACGGCACAATCT-GTTCTTTGCCTGAGGTG---TACTGAGTTCTAACTTC-- 828
consensus_12453#1 GGACATCCACGGCACAATCRMGTTCTTTVGCCTAGGGGMYCDACHGYGTRCTAACTTCCG 124
******* *********** ******* * *** * ** * ** ********
consensus_12453#0 GAAAATGCTTCTGTGATATGTGAATGGAATATTTGAACTACTTGCC-TGAATATCAATTG 887
consensus_12453#1 AAAAWCGCTTCTGTGATATGTGAAHGYAATATTTGAACTACTTSSCCTGAATATCAATTG 184
*** ****************** * **************** * *************
consensus_12453#0 CACA-TCTGCCTCAAGCAATGTTTGAGAAAGGATGCGATGCAAGTAACTAACTTCCTTCG 946
consensus_12453#1 CACRATCTGCCTCAAGCAATGTTTGAGAAAGGATGCGATGCAAGTAACTAACTTCRT-CG 243
*** ************************************************** * **
consensus_12453#0 TAACAGCCTTGGCAAATTGACTTGGCTGCAAATCAGTATCTTCAGGCCCATTCCAACTTT 1006
consensus_12453#1 TAACAGACTTGGCAAATTGACTTGGCTGCAAATCAGTATCTTCAGGCCCATTCCAACTTT 303
****** *****************************************************
consensus_12453#0 CCACAATTTGCGGTAATTTTCTCAGATTTGCTAGTAATCTCTCTCTCATTATCTGGACTA 1066
consensus_12453#1 CCACAATTTGCGGTAATTTTCTCAGATTTGCTAGTAATCTCTCTCTCATTATCTGGACTA 363
************************************************************
consensus_12453#0 GCTTGGTGTGAATTTCATCTCGATGAATCTTGTAATCCTGAGTCACTCTATCCAGTTCAG 1126
consensus_12453#1 GCTTGGTGTGAATTTCATCTCGATGAATCTTGTAATCCTGAGTCACTCTATCCAGTTCAG 423
************************************************************
consensus_12453#0 ACATTAACAGTTGTTTGCGTGCCTCGGGTATTTTCAGGAAAAGTACACGCCGGATATCTG 1186
consensus_12453#1 ACATTAACAGTTGTTTGC------------------------------------------ 441
******************
consensus_12453#0 GAATTAAAGAATATATAAAGCTGATTATCTGACTTGCCAAAGCTAAATGCTTAGACGTAA 1246
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 TTGATTTCAGACCAGACACCTGCATGGCACCTGCACCAAGAACCAGTTGGCACGTCCTAG 1306
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 TGTTGAAGAGCTTCAATATTTCAACAACACGTTGGACCACCTCAAAAGATAATGATGGCA 1366
consensus_12453#1 ------------------------------------------------------------
consensus_12453#0 AGCATTTACTGATGTCAACATATTCCGATAACATCTTCAACAATATCAAACCA 1419
consensus_12453#1 -----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||