These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1179 fasta sequence [GATCTTGAATTCTTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGTNGGCGCCGGCCGCGCCGNNGNCNGNANCAACC-GGCGGCACCGGCGACGCCAGCGG-GCCCGCNCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAACCAGCTGAACAGCTCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAACGCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACTCGCTGGTGCAGTACCACGTGCTGTCCACGCTGATCCCCATGTCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCAGCAACTCGCCGGGGCAGTACCCGCTCAACGTGACGGCGGAGGGGCAGCAGGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGGCAACGCGCTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCCATCTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGGAAGACGCCGGCCACGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG-ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGTCATATCATTACCATTATTATTGTAATTGCTAGGAGTATGTAATGTATCATTGGATTCCCATTTTTCTGTAATGTAATGGTTTTAAATAAAAAAAAAAAAAAAA] [+] EMBL OSR32861A [GATCTTGAATTCTTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGNGTC ] [+] EMBL OSS2687A [ TTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGTNGGCGCCGGCCGCGCCGNNGNCTGTATCAACCTGGNGGC ] [+] EMBL OSS2682A [ TTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGGNGGCGCCGGCCGCGCCGNGGNCNGNANCAACC GGCGGCACCGGCGACGCCAGCGG GCCCGCNCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGNTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAACCAGCTt ] [+] EMBL OSS2933A [ ATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGTNGGCG CGGCCGCGCNGNTGNCNNNA CAACC GGCGGCACCGGCNACGCCAGCGG GCCCGCCCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCG ] [+] EMBL AU174266 [ ATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCACAACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCCATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGCCCGACGGCGGCGCCGGCCGCGCCGGCGCCGGCGAC ACC GGCGGCACCGGCGACGCCAGCGGCGCCCGCGCCGGCGTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGGCAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAACCAGCTGAACAGCTCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAACGCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACT ] [+] EMBL AK108308 [ GCTGAACAGCTCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAACGCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACTCGCTGGTGCAGTACCACGTGCTGTCCACGCTGATCCCCATGTCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCAGCAACTCGCCGGGGCAGTACCCGCTCAACGTGACGGCGGAGGGGCAGCAGGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGGCAACGCGCTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCCATCTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGGAAGACGCCGGCCACGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGTCATATCATTACCA ] [+] EMBL AU174267 [ GCGCTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCCATTTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGGAAGACGCCGGCCACGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGaaaaaa ] [+] EMBL AU174273 [ GACGAAAAAGAAGGGGAANACGCCGGCCNCGTCGGTCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACGCGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG ATGAGGTTGATGACAAGTTTGAGCGAGATCTCTGTATTGTANNNNCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATTTTTGGTTGAATTATTGCTCGaaaaaa ] [+] EMBL AU174062 [ CGGACGCGACGACCCCGTCTCTCCCGGCGGCGAGGGTGNCGGCCGGTGCTGGTGTCGGGGTGGTTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACGCATGAGGTTGATGCCAAGTTTGAGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGGTGTTTTTTTTCTCTCTTAATTTTTTTTGTTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCNTTTTTGGTTGAATTATTGCTCGTCATATCATTACCNTTATTATTGTAATTGCTAGGAGTATGTAATGTATCATTGGATTCCCATTTTTCTGTAATGTAATGGTTTTAAATAAAAAAAAAAAAAAAA] consensusID : consensus_12454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1095 fasta sequence [CACTAAACTGCTCACTGCATTTGCATGCACGTGGCCAAGAAGAGTTTGGCATCCATGGCGGCTTCGGCGACGACGACCATCCTCGTGGCGGCGATGTTGGTGGTGATGGCGGTGGAGTCTCCGGTGGCGAACGGGCAGGCGGCGGCGGCTGCGCCGGCGCCGGCGCCGGCGGCGCCGAAGACGATCACGGCGATCCTGACCAAGGCCGGTCAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAACCAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAACGCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCGCTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACCGCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACGCTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCGCTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCGTCGCCGGCGGACAAGGCCAAGAAGAAGGCCGGCCCCGTCGGCGTGGCCGACGCGCCGGCGGCCGACACGGCTGCCGGGACGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGCGGCGCGGGGCACGGTGCGGCGGGGCTTGGTCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGACAGTAAAGGAGAATGTTGGAGATTGCCAATTCACCATGGGATTTTTTTTTCTTTTAATTTTGTGGAAAGGTGTTAAAATTGTTTTGTTGTTTTGGTTTTTCTTGTTCTTTTTGTATGATTTGGTAGGATTTTGTTTTGTCCGTGTCCTATGTTGATCTTTTAGAGTTTTTCACTGTGTGTTGTATGTCTTTTCGTGGTTGTTATATATGTAATAAGAAGTGTTTGTATATTGTGGTATCTAAT] [+] EMBL AK105598 [CACTAAACTGCTCACTGCATTTGCATGCACGTGGCCAAGAAGAGTTTGGCATCCATGGCGGCTTCGGCGACGACGACCATCCTCGTGGCGGCGATGTTGGTGGTGATGGCGGTGGAGTCTCCGGTGGCGAACGGGCAGGCGGCGGCGGCTGCGCCGGCGCCGGCGCCGGCGGCGCCGAAGACGATCACGGCGATCCTGACCAAGGCCGGTCAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAACCAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAACGCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCGCTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACCGCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACGCTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCGCTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCGTCGCCGGCGGACAAGGCCAAGAAGAAGGCCGGCCCCGTCGGCGTGGCCGACGCGCCGGCGGCCGACACGGCTGCCGGGACGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGCGGCGCGGGGCACGGTGCGGCGGGGCTTGGTCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGACAGTAAAGGAGAATGTTGGAGATTGCCAATTCACCATGGGATTTTTTTTTCTTTTAATTTTGTGGAAAGGTGTTAAAATTGTTTTGTTGTTTTGGTTTTTCTTGTTCTTTTTGTATGATTTGGTAGGATTTTGTTTTGTCCGTGTCCTATGTTGATCTTTTAGAGTTTTTCACTGTGTGTTGTATGTCTTTTCGTGGTTGTTATATATGTAATAAGAAGTGTTTGTATATTGTGGTATCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12454#0 GATCTTGAATTCTTGATCAGTTGAGTTGCATTGCATGCAGAAAGCTCATCACAAGTTCAC 60 consensus_12454#1 ------------------------------------------------------------ consensus_12454#0 AACCAATAGCAATCACCAAGTTTTTTTTTTGACACTGTGACAGCATCCACCATGCAAGCC 120 consensus_12454#1 -------------CACTAAACTGCT-------CACTGCATTTGCATGCACGTGGCCAAGA 40 *** ** * * ***** **** *** ** * consensus_12454#0 ATGCAGAGACTTGTGCTGTGTCTTGTTGTGTCCATGGCCATCGCGGCGTCGGCTCAGGGC 180 consensus_12454#1 AGAGTTTGGCATCCATGGCGGCTT-CGGCGACGACGACCATCCTCGTGGCGGCGATGTTG 99 * * * * * * *** * * * * * ***** * * **** * consensus_12454#0 CCGACGTNGGCGCCGGCCGCGCCGNNGNCNGNANCAACCGGCGGCACCGGCGACGCCAGC 240 consensus_12454#1 GTGGTGATGGCGGTGGAGTCTCCGGTGGCG-AACGGGCAGGCGGCGGCGGCTGCGCCGGC 158 * * **** ** * *** * * * * ****** **** **** ** consensus_12454#0 GGGCCCGCNCCGGCNTCGACGAAGACGACGAACATCACGGGGGTGCTCGCCAAGGCCGGG 300 consensus_12454#1 --GCCGGCGCCGGCGGCGCCGAAGACGA------TCACGGCGATCCTGACCAAGGCCGGT 210 *** ** ***** ** ********* ****** * * ** ********** consensus_12454#0 CAGTTCAACACGCTCATCAGGCTGATGCGGTCCACCGGCGCGGCGGAGCAGATCGACAAC 360 consensus_12454#1 CAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAAC 270 ******* ** * ** ** *** *** *** ** ** * ********* ***** consensus_12454#0 CAGCTGAACAGC---------TCGCGCAACGGGCTGACGGTGTTCGCGCCGACGGACAAC 411 consensus_12454#1 CAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAAC 330 *** * ** * ** * ****** ** ************ ******** consensus_12454#0 GCGTTCACGTCGCTCCCCTCCGGCACGCTCAACTCGCTGTCCGACCAGCAGAAGAACTCG 471 consensus_12454#1 GCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCG 390 ****** ** ******** ******* ****** *** **************** *** consensus_12454#0 CTGGTGCAGTACCACGTGCTGTCCACGCTGATCCCCATGTCGCAGTTCGACACCGTCAGC 531 consensus_12454#1 CTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGC 450 ********** ****** ***** ***** ******** ******************** consensus_12454#0 AACCCGCTCCGGACGCAGGCCGGCAGCAACTCGCCGGGGCAGTACCCGCTCAACGTGACG 591 consensus_12454#1 AACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACC 510 ************************ * * * * ** **************** ** consensus_12454#0 GCGGAGGGGCAGCAGGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGGCAACGCG 651 consensus_12454#1 GCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACG 570 ** ***** * ************************************* **** ** consensus_12454#0 CTCTACACCGGCGACAACCTCGTCGTGTACCAGGTGGACAAGGTGCTGCTCCCGATGGCC 711 consensus_12454#1 CTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCG 630 ****** ******** ********* ******** ************** *** *** consensus_12454#0 ATCTACAGCACGCCGGCGCCCGCGCCCGCGCCGCTGTCGCCGGCGACGAAGAAGAAGGGG 771 consensus_12454#1 CTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCG---TCGCCGGCGGACAAGGCCAAGAAG 687 ***** ** **** * ********* ****** ********* *** *** * consensus_12454#0 AAGACGCCGGCCACGTCGG--TCGCCGACGCGCCCGAGGCCGCCGACGCGACGCCGGACG 829 consensus_12454#1 AAG--GCCGGCCCCGTCGGCGTGGCCGACGCGCC---GGCGGCCGACACGGCTGCCGGGA 742 *** ******* ****** * *********** *** ****** ** * * * consensus_12454#0 CGACGACCCCGTCTCTCGCGGCGGCGAGGGTGACGGCCGGTGCTGGTGTCGG---GGTGG 886 consensus_12454#1 CGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGC-GGCGCGGGGCACGGTGCGGCGG 801 ******* ** * * *** ***** ** * **** ** ** ** *** ** ** consensus_12454#0 TTCTTGCCTTGGCGAGCGTCTGGTTGGGGCTGTGACG--ATGAGGTTGATGACAAGTTTG 944 consensus_12454#1 GGCTTGG-TCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGACAG---TA 857 **** * **** * * * * ****** ** ** ** ***** * consensus_12454#0 AGCGAGATCTCTGTATTGTACGCGCCTTCCATAATTTTTTCTGTTGTTTTTTTTCTCTCT 1004 consensus_12454#1 AAGGAGAATGTTGGAGATTGCCAATTCACCATGGGATTTTTTTTTCTTTTAATTTTGTGG 917 * **** ** * * * **** **** * ** **** ** * * consensus_12454#0 TAATTTTTTTTG-TTGTTGAAAAGGTGTTCTTTTCTTAATGTTCTGTCCATT-TTTGGTT 1062 consensus_12454#1 AAAGGTGTTAAAATTGTTTTGTTGTTTTGGTTTTTCTTGTTCTTTTTGTATGATTTGGTA 977 ** * ** ***** * * * **** * * * * * ** ****** consensus_12454#0 GAATTATTGCTCGTCATATCATTACCATTAT-TATTGTAATTGCTAGGAGTATGTAATGT 1121 consensus_12454#1 GGATTTTGTTTTGTCCGTGTCCTATGTTGATCTTTTAGAGTTTTTCACTGTGTGTTGTAT 1037 * *** * * *** ** * ** * ** * ** * ** *** * * consensus_12454#0 ATCATTGGATTCCCATTTT-TCTGTAATGTAATGGTTTTAAATAAAAAAAAAAAAAAAA 1179 consensus_12454#1 GTCTTTTCGTGGTTGTTATATATGTAATAAGAAGTGTTTGTATATTGTGGTATCTAAT- 1095 ** ** * ** * * ****** * * *** *** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||