These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 649 fasta sequence [TTGCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCAATTGCAAGCAAGGCAAAGAAGGCGGAAAGGGTNCGGCCGATGC-TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT-GGGGCAAATATCCTCAAGGA-GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGGCAAAAAAAAAAAACAAAAAAAAAA] [+] EMBL AU081255 [TTGCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCAATTGCAAGCAAGGCAAAGAAGGCGGAAAGGGTNCGGCCGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGGNAAAAA ] [+] EMBL C27801 [ GCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCA ] [+] EMBL AU065565 [ AGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGGAGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAAACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCA ] [+] EMBL AK120721 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTT ] [+] EMBL CF281413 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGAT ] [+] EMBL AU064826 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTTCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCG CCTATGCTGAGTGAGCTNCGGAGGAAAGATGCCAAGACG TTCCCTATG AGNCCTG AACGGTTCGTCAAGCTGGTGACCCG GCTNGGATCAAGGn ] [+] EMBL AU030071 [ CGATGCTTGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTTGGGGGCAAATATCCTCAAGGAGGGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTTGCACCTGCTCGACAAGCG CCTATGCTGAGTNAGCTCCGGAGGAAA ATGCCAA ACGCTCCCC ] [+] EMBL AU030072 [ CGATGC TGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGNGTACAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTNTCTGGCAAAAAAAAAAAA ] [+] EMBL AU172900 [ AAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTCCAACAGTGTTT GGGGCAAATATCCTCAAGGA GGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGGCAAAATGCTTTAGCAAAAAAAAAA] consensusID : consensus_12457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CGATGCTGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTTGGGCCAAATATCCTCAAGGAGGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGACGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAACTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGCAAATGCTTTACCAAATTACTTCCTCCGTTTCACATGTAAGTCATTCTAGCATTTTCCACATTCACTTTGATGTTAATGAATGTAGACATATATATCTAA] [+] EMBL BI805692 [CGATGCTGCTAAAACCCCTGTGCTCAGCAAAGAACTTAAGAGTACAACAGTGTTTGGGCCAAATATCCTCAAGGAGGGGTCTGATCCGAAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCTATGCTGAGTGAGCTGCGGAGGAAAGACGCCAAGACGCTCCCCTATGAAGACCTGAAACGGTTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAACTGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGAAATATGCTAACTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAGATGCTTCCTAATTTTTGTTTTCTGCAAATGCTTTACCAAATTACTTCCTCCGTTTCACATGTAAGTCATTCTAGCATTTTCCACATTCACTTTGATGTTAATGAATGTAGACATATATATCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12457#0 TTGCGCCGCCGCCAAGACGAGTCGCGGCTGCCGATCTCCATCTGGCGAGGAGAGTAGGGG 60 consensus_12457#1 ------------------------------------------------------------ consensus_12457#0 AGGGGATCCTGTTAAAAGCTTCCATCCAGGAATGGCAATGGCATTGAGAAGAGTACTGAA 120 consensus_12457#1 ------------------------------------------------------------ consensus_12457#0 ACATGGTGTAATCCCAAGAGATGCAGCTCAAGTAGTTGGCATAAGAGGATTTGCAATTGC 180 consensus_12457#1 ------------------------------------------------------------ consensus_12457#0 AAGCAAGGCAAAGAAGGCGGAAAGGGTNCGGCCGATGCTGCTAAAACCCCTGTGCTCAGC 240 consensus_12457#1 --------------------------------CGATGCTGCTAAAACCCCTGTGCTCAGC 28 **************************** consensus_12457#0 AAAGAACTTAAGAGTACAACAGTGTTTGGGGCAAATATCCTCAAGGAGGGGTCTGATCCG 300 consensus_12457#1 AAAGAACTTAAGAGTACAACAGTGTTTGGGCCAAATATCCTCAAGGAGGGGTCTGATCCG 88 ****************************** ***************************** consensus_12457#0 AAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCT 360 consensus_12457#1 AAACTCCAGCCAGATTCTGAATACCCTGAGTGGCTGTGGCACCTGCTCGACAAGCGCCCT 148 ************************************************************ consensus_12457#0 ATGCTGAGTGAGCTGCGGAGGAAAGATGCCAAGACGCTCCCCTATGAAGACCTGAAACGG 420 consensus_12457#1 ATGCTGAGTGAGCTGCGGAGGAAAGACGCCAAGACGCTCCCCTATGAAGACCTGAAACGG 208 ************************** ********************************* consensus_12457#0 TTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAAC 480 consensus_12457#1 TTCGTCAAGCTGGTGAACCGAGCTCGGATCAAGGAGCAGAATGCCCTCACTGCAAAGAAC 268 ************************************************************ consensus_12457#0 TGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGA 540 consensus_12457#1 TGATCTGGATACTCTCTGGAGGTTCCATCATCTGTTTTTCACTACATGATTTACTGTTGA 328 ************************************************************ consensus_12457#0 AATATGCTAAGCTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAG 600 consensus_12457#1 AATATGCTAA-CTGTGCACTGTAATAATGTAGTGACCTGGAACATTAGAATATTTAAGAG 387 ********** ************************************************* consensus_12457#0 ATGCTTCCTAATTTTTGTTTTCTGGCAAAAAAAAAAAACAAAAAAAAAA----------- 649 consensus_12457#1 ATGCTTCCTAATTTTTGTTTTCTGC--AAATGCTTTACCAAATTACTTCCTCCGTTTCAC 445 ************************ *** * **** * consensus_12457#0 ------------------------------------------------------------ consensus_12457#1 ATGTAAGTCATTCTAGCATTTTCCACATTCACTTTGATGTTAATGAATGTAGACATATAT 505 consensus_12457#0 ------ consensus_12457#1 ATCTAA 511 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||