These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1604 fasta sequence [CCCTTCCCGCCGCCGCCGCCTCCTCCGCCTCCTCTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA-CAATATATTCAGCATCTTG-GGACCATTCTGTT-CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC-TTGAATTG-CTT-GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT-GAGGGTAT-GGGACCCTCGTAAACCTGGAACTCTAGCTCCA-AT-TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA-AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAAAAAAGGA] [+] EMBL AK099418 [CCCTTCCCGCCGCCGCCGCCTCCTCCGCCTCCTCTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGATTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCAC ] [+] EMBL CB676587 [ CTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGAC ] [+] EMBL CB676458 [ CTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACT ] [+] EMBL CF305766 [ GCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCTTTTTTTTTACCCGCATGGGCCTCTCTGAGATCGNCAACAGCCTCCTCTTTTTCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGG ] [+] EMBL C27990 [ TCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCCTTTGAATTG CTTGGGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTTACCCTGTCTTNNAGGGTATGGGGACCCTCGTAAACCTGGGACTCTAag ] [-] EMBL CB653785 [ ACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAgg ] [-] EMBL CB676459 [ TTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATTACATAATTTATCAAAAAAAAAAAAAGGA] [-] EMBL CB676588 [ TTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATtcca ] [-] EMBL CA763606 [ cCAAACCAATATATTAAGGATCTTGCGGCCCCTTCTTTTCCGGCATCGGGATGTCCACCCAGGGAAAGACCCATGGAATATGGT TCTGGGAAGGCC CTGAAGTG CTC GGATTGTGGTGG GAGAGCTCTTCCCTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGCCCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATGATCTTCATGTGATGGGAAAGTAATGTTGTGGGATCTAAGGCCAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAAAAAAaa ] [+] EMBL BI812790 [ ctgATTGCCTT GGATT T GTGGTGAGAGCTCTTCACTAATC CT CTGGT GCTCTGACCCCGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCACATGTTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAAT TTGTGGGATCTAAGGACAGCAT GCCACTGGCTTCTGTGGAGTCACACACAAGACCAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGA CTGATTCCAA CTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGC AAAGGAAGCTGTGCC ATTTTGGTAGGGAAC ATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||