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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1604 fasta sequence
[CCCTTCCCGCCGCCGCCGCCTCCTCCGCCTCCTCTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA-CAATATATTCAGCATCTTG-GGACCATTCTGTT-CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC-TTGAATTG-CTT-GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT-GAGGGTAT-GGGACCCTCGTAAACCTGGAACTCTAGCTCCA-AT-TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA-AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAAAAAAGGA]
[+] EMBL AK099418 [CCCTTCCCGCCGCCGCCGCCTCCTCCGCCTCCTCTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGATTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCAC ]
[+] EMBL CB676587 [ CTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGAC ]
[+] EMBL CB676458 [ CTCCGCCGGCCGACGCCGCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCGCCGACCTCACCCGCATGGGCCTCTCTGAGATCGTCAACAGCCTCCTCCTCGCCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGGTCTTGCAAGAATATGGAGAGATGCATCTGAATGTACACATATTTTGGAAGGACATAGTGACGGAATCACTTCTGCTCGCTTCATTAATAAAGGTGAAACTGAAGACAGGCTGCATGTAGTCACTGCATCAAAGGATAGGTCATTGCGCTTATTCAAGTTTGATACATCAGTCAGTGTTCCAAAGCAAATTGGGGCTTACAAAATTCTCCGTGGCCACACATCATCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACT ]
[+] EMBL CF305766 [ GCCGCCGCCGCCATGGACTCCGGCGGCGCCTCCGACCCCTCGCGCCAGGTGCGGGTGCGCTTCCTGACGAAGCTCCCCGCGCCGCTGCGCGCGCCGCCCACCTCCATCGCCGTCCCCTTTTTTTTTACCCGCATGGGCCTCTCTGAGATCGNCAACAGCCTCCTCTTTTTCGCCTCCCCGGATCACCAGGCGCAGCCCTTCGACTTCCTCGTCGACGGCGAGCTCGTGCGGCTCCCGCTCCAGGAGTTCCTCCTCGCCAAGGGCATCTCAGTGGAGAGGGTGCTTGAGCTTGAATATGTAAAAGCTGTGGCACCGAGGAAGCAGGAGGATCCATGCCCGCATGATGACTGGGTTAGCGCAGTTGATGGATCGAACCCGAGTTTCGTATTAACAGGTTGCTATGATGG ]
[+] EMBL C27990 [ TCTGTTCAGAGTGTTGCAGTAGACCCTTCCACAAACATGATATGTTCTGGTTCCTGGGATAACTCAATTAAGCTATGGTCAGTCGAAGGGTCGGAAGAAGATGGTGACACTGTCTCAGTGAAGAAGAGAAGGACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCCTTTGAATTG CTTGGGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTTACCCTGTCTTNNAGGGTATGGGGACCCTCGTAAACCTGGGACTCTAag ]
[-] EMBL CB653785 [ ACAAATTCTGATTCATCTGGACCTGAAGAATCTCTGTTTGAGGGTTCTGCCACTTCAACATTTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAgg ]
[-] EMBL CB676459 [ TTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATTACATAATTTATCAAAAAAAAAAAAAGGA]
[-] EMBL CB676588 [ TTCTGGGACATACGCAGTGCGTTTCTGCTGTTACCTGGCCTGAGCGACAAA CAATATATTCAGCATCTTG GGACCATTCTGTT CGGCAGTGGGATGTCCAAACAGGGAAAGAGACATGGAATATGGTATCTGGGAAGGCC TTGAATTG CTT GGATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGGATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATtcca ]
[-] EMBL CA763606 [ cCAAACCAATATATTAAGGATCTTGCGGCCCCTTCTTTTCCGGCATCGGGATGTCCACCCAGGGAAAGACCCATGGAATATGGT TCTGGGAAGGCC CTGAAGTG CTC GGATTGTGGTGG GAGAGCTCTTCCCTAATCGCTGCTGGTGGCTCTGACCCTGTCTT GAGGGTAT GGGCCCCTCGTAAACCTGGAACTCTAGCTCCA AT TTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATGATCTTCATGTGATGGGAAAGTAATGTTGTGGGATCTAAGGCCAGCATGGCCACTGGCTTCTGTGGAGTCACACA AAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGCAAAAGGAAGCTGTGCCAATTTTGGTAGGGAACAATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAAAAAAaa ]
[+] EMBL BI812790 [ ctgATTGCCTT GGATT T GTGGTGAGAGCTCTTCACTAATC CT CTGGT GCTCTGACCCCGTCTT GAGGGTAT GGGACCCTCGTAAACCTGGAACTCTAGCTCCACATGTTTTCAGTTTTCCTCCCATAAAAGCTGGATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAAT TTGTGGGATCTAAGGACAGCAT GCCACTGGCTTCTGTGGAGTCACACACAAGACCAGGTTTTATGTGCGGACTGGTGGAAAGGGGATAGCGTCATCAGTGGGGGA CTGATTCCAA CTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTTTGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCTGTTCAGAATTGAACAGAATGTTATGTATGGAAAGATACCTGC AAAGGAAGCTGTGCC ATTTTGGTAGGGAAC ATGTGTAATCGTTTGGCAGATTCAATACATCACATAATTTATCAAAAAAAAAAA ]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||