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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12477#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1046 fasta sequence
[CTGCGATANGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG-TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGT-GGAGATGATAGAGCATTA-CCCAGAAGAAGAAAAGCC-TTGCCAAA-TGGAAGTGA-CCCAGAGAATGAGGAATCTCGATCAAGCAAAATGGCCGTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGCCTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAATTAACCCGG]
[+] EMBL OSS1118A [CTGCGATANGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGNTCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTTCAAAGTTGGTGCA ]
[+] EMBL AF464904 [ cGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGT GGAGATGATAGAGCATTA CCCAGAAGAAGAAAAGCC TTGCCAAA TGGAAGTGA CCCAGAGAATGAGGAATCTCGATCAAGCAAAATGGCCGTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGCCTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGAaaaaaaa ]
[+] EMBL AK072844 [ AGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGAAGAAGCTGGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGT GGAGATGATAGAGCATTA CCCAGAAGAAGAAAAGCC TTGCCAAA TGGAAGTGA CCCAGAGAATGAGGAATCTCGATCAAGCAAAATGGCCGTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGCCTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGGAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAATTAACCCGG]
[+] EMBL AU030557 [ GGGCACCCGCTTCCCCGCGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAG TGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGTGGGAGATGATAGAGCATTACCCCAGAAGAAGAAAAGCCTTTGCCAAATTGGAAGTGACCCCAGAAGATGANGGATCTCcggatnca ]
[+] EMBL AU030558 [ gATGAGGAATCTCGATCAAGCAAAATGCCCTTAAGAAGTGCAAATATCAGTCCCAGAGGACGTGGGAGAGGTCGAGTTAGAGGGCGAGGACGACCACCCACCAAGCGGAAGGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCA GGCGAAGCNTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGT GAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAAaaaa ]
consensusID : consensus_12477#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 496 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGG-CCTA-TG-CCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC-TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTG--TTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAA-GTGTTTTGTCAGAATTAACCCGGTATTGAAGCAGTGATATTCTGTTATAAAAAA]
[+] EMBL AU183748 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGAGAGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGG CCTA TG CCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTG TTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAA GTGTTTTGTCAGAATTAACCCGGTATTGAAGCAGTGATATTCTGTTATAAAAAA]
[+] EMBL C74285 [ AGCGTACCTCCAAGCACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGG CCTA TG CCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGCTTGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTG ]
[+] EMBL AU161597 [ TTGGCCCTATTGCCCAGATGCGATTGGAAACATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTG TTTTCCAATAATTGCTTGCTAGTTGCCTCACATTGTTGACATGATTGACTACTGAA GTGTTTTGTCAGAATTAAaaa ]
[-] EMBL CA761507 [ aGAGGCCGA GACAAGGGGGATTAGCCAGGGCCATTTTTTGATTGTTATGCACTAACAGGGCAGTTCTCCTGGTGTTGTAAAATGTAAATATGTAGC TGCAGCTAGCTGTGATGTGCTGCTGATGTAATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTTTCCAATAATTGCTTGCTAGTTGCCTCCCATTGTTGCCATGATTGACTACTGAAGGTGTTTT ]
consensusID : consensus_12477#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[CTTTTTGTTGTGACAGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAGTGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGTGGAGATGATAGAGCATTACCCAGAAGANGAAAAGCCTTGCCAAATGGAAGTGACCCAGGGAATGAGGATCTCGATCAAGCAAAATGNCCTAAGAGGTGCAAATATCAGTCCCAGGGACGTTGGAGAGGTCGAGTAGAGGCGAGGCGNCCACCACCAGCGGAGGAAGTT]
[-] EMBL C99636 [CTTTTTGTTGTGACAGGCACGGATCAAAAAGATCATGCAGGCTGATGAGGACGTTGGCAAGATTGCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTTGAATTGTTTTTGCAAGATTTAATTGACCGAACTTACGAAATTACACTGCAAAGTGGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTTGACTTCCTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCATGTGGAGATGATAGAGCATTACCCAGAAGANGAAAAGCCTTGCCAAATGGAAGTGACCCAGGGAATGAGGATCTCGATCAAGCAAAATGNCCTAAGAGGTGCAAATATCAGTCCCAGGGACGTTGGAGAGGTCGAGTAGAGGCGAGGCGNCCACCACCAGCGGAGGAAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12477#0 CTGCGATANGTGGAGGAGCGGAGGCGGAGGCGAACGCGAGGAGGAAGACGAAGATGAGGA 60
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 AGAAGCTGGGCACCCGCTTCCCCGCGGCA-CGGATCAAAAAGATCATGCAGGCTGATGAG 119
consensus_12477#2 ----------CTTTTTGTTGTGACAGGCA-CGGATCAAAAAGATCATGCAGGCTGATGAG 49
consensus_12477#1 ------CCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGAGAGCGTACCTCCAAGCACA 54
* * ** * * ** *** * * * *
consensus_12477#0 GACGTT--GGCAAGATT-------GCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTT 170
consensus_12477#2 GACGTT--GGCAAGATT-------GCACTAGCTGTACCTGTTTTAGTATCGAGGGCCCTT 100
consensus_12477#1 CACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGTGGAA 114
** * *** * *** ** **** * * * * * **
consensus_12477#0 GAATTGTTTTTGCAAGAT--TTAATTGACCGAACTTACG--AAATTACACTGCAAAG--T 224
consensus_12477#2 GAATTGTTTTTGCAAGAT--TTAATTGACCGAACTTACG--AAATTACACTGCAAAG--T 154
consensus_12477#1 GAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAACATC 174
*** * * ** * * * * ** * * ** * ** ***
consensus_12477#0 GGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTT 284
consensus_12477#2 GGTGCAAAGACATTGAATTCCTTCCACCTAAAGCAATGTGTGAGGAGGTACAGTTCTTTT 214
consensus_12477#1 GGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGACTAC 234
**** *** ** ** ** * * ** * * *
consensus_12477#0 GACTTC-----CTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCAT 339
consensus_12477#2 GACTTC-----CTAACTGAGGTTGTCAACAAGGTACCGGACCTCGGTGGCGCTGACTCAT 269
consensus_12477#1 GACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGC-AGTTCTC 293
*** * ** * ** ** * * * * ** **
consensus_12477#0 GTGGAGATGATAGAGCATTACCCAGAAGAAGAAAAGCCTTGCCAAATGGAAGTGACCCAG 399
consensus_12477#2 GTGGAGATGATAGAGCATTACCCAGAAGANGAAAAGCCTTGCCAAATGGAAGTGACCCAG 329
consensus_12477#1 CTGGTGTTG-TAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGTAA 352
*** * ** ** * * * * ** * * ** * ** *** *
consensus_12477#0 AGAATGAGGAATCTCGATCAAGCAAAATGGCCG------TAAGAAGTGCAAA-TATCAGT 452
consensus_12477#2 GGAATGAGGA-TCTCGATCAAGCAAAATGNCC-------TAAGAGGTGCAAA-TATCAGT 380
consensus_12477#1 TGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTTGC 412
* * * * * * * ** * * ** * *** ** *
consensus_12477#0 CCCAGAGGACGTGGGAGAGGTCGAGGTAGAGGGCGAGGACGACCACCCACCAAGCGG-AA 511
consensus_12477#2 CCCAG-GGACGTTGGAGAGGTCGAG-TAGAGG-CGAGG-CGNCCACC-ACCA-GCGG-A- 432
consensus_12477#1 CTCAC--ATTGTTGACATGATTGAC-TACTGA-AGTGTTTTGTCAGAATTAACCCGGTAT 468
* ** ** * * * ** ** * * * ** * *** *
consensus_12477#0 GGAAGTTGGTTATGTACAATTTGAGGATGAGAGCAGCATGTTTGCTGATCAGGGCGAAGC 571
consensus_12477#2 GGAAGTT----------------------------------------------------- 439
consensus_12477#1 TGAAGCAGTGATATTCTGTTATAAAAAA-------------------------------- 496
****
consensus_12477#0 CTTACCAGGAGAGGAGACGGTTCCAGAGACCATCCATGGCACCGAGAGCGTACCTCCAAG 631
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 CACACACCCTCCAGCAGAAGCCCCATCGGCAGCAGAGATACCAGCTCCAAATCCAAAGGT 691
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 GGAAGAAGCGAAAAACGACGACCATCAGCCGGATTGGCCTATGCCAGATGCGATTGGAAA 751
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 CATCGGTGTCGGACCATCCGGTTTTGGACATCTTACGGTGCAAGTTGACGAGGATGAGGA 811
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 CTACGACAACGAGGATTAGCCACGGCCATCTTCTGATTGTTATGCACTAACAGGGCAGTT 871
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 CTCCTGGTGTTGTAAAATGTAAATATGTAGCTGCAGCTAGCTGTGATGTGCTGCTGATGT 931
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 AATGCAGTATGTAGTTGTCCCGTGTAACTTTGTCTGTTTTCCAATAATTGCTTGCTAGTT 991
consensus_12477#2 ------------------------------------------------------------
consensus_12477#1 ------------------------------------------------------------
consensus_12477#0 GCCTCACATTGTTGACATGATTGACTACTGAAGTGTTTTGTCAGAATTAACCCGG 1046
consensus_12477#2 -------------------------------------------------------
consensus_12477#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||