These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1023 fasta sequence [GGGGC-GGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGC-TGATCGATCAACGCGTT-GATCTATCTCTGATCGATCGAGAGATCGATC-AACCTGTACAGTGGACACCGATCGACGCGAATGTA-TGGCGGAATGCAGAGATGGTTC-TTG-TTTGTTTGTGTTTTTTC-TTGC-TTTGAAG-TTTGAAAGATTC-TGACCAAAGAAGGGCGCCGTATCCGGGAG-TTTG-TTTCGTCGTCG-TTTGCTTCGTTTGAC-GATGATGAACCAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTNGCTAGTAGTGTAGTGGTAGTAGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCATTCCGTTAT-ACTAGAGGCT-AGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAA-GCAAGCTTGCC-GTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAATTGAAGAATTTACCATTTGTCACTCTACCAAAAAAAAAGTGCTCAAATGCCACTCTCCCAAATATTCATTCCTAAATGTCACCCGGACCTCACCACTTATGTTTGAATGAAAAGTGAGGCTGACATGTGCGTTCGGATGGCATTTGGGAATGAAAATTTAGGAGAGTGGTATTTGAGTGCTATCATTTTGGTAGTTGCAAATAGTAAATTCTCCCCCTATTTTCTATGACACTAAACTCAGCCCAATACTATAAATTGGACTAAAATATATTTTGAAACGGAGGTAGTAGTATAACATATAAAAAA] [+] EMBL OSC905 [GGGGCNGGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGCTTGATCGATCAACGCGTT GATCTATCTCTGATCGATCGAGAGATCGATCAAACCTGTACAGTGGACAACGATCGACGCGAATGTATTGGCGGAATTCAGAGATGGTTCTTTGTTTTGTTTGTGTTTTTTCTTTGCTTTTGAAGTTTTGAAAGATTCTTGACCAAAGAAGGGCGCCGTATTCCGGAGTTTTGTTTTCGTCGTCGTTTTNTTTCGTTTTACGGATGATG ACCAG ACCAaag ] [+] EMBL AU082426 [ GC GGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGC TGATCGATCAACGCGTTGGATCTATCTCTGATCGATCGAGAGATCGATC AACCTGTACAGTGGACACCGATCGACGCGAATGTA TGGCGGAATGCAGAGATGGTTC TTG TTTNTTTGTGTTTTTTC TTGC TTTGAAG TTTGAAAGATTC TGACCAAAGAAGGGCGCCGTATCCGGGAG TTTG TTTCGTCGTCG TTTGCTTCGNTTGAC GATGATGAACCAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTNGCTAGTAGTGTAGTGGTAGTAGTTAGGCAGGCANCCTTGCCTGGTGTGTGT ] [+] EMBL AK063244 [ GC GGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCGCCGCAACTGAACTGAACTTGC TGATCGATCAACGCGTT GATCTATCTCTGATCGATCGAGAGATCGATC AACCTGTACAGTGGACACCGATCGACGCGAATGTA TGGCGGAATGCAGAGATGGTTC TTG TTTGTTTGTGTTTTTTC TTGC TTTGAAG TTTGAAA ] [+] EMBL AU094480 [ CGGCCGCCGCAANTGANCTGACCTTGC TGATCGATCAACGCGTT GATCTATCTCTGATCGATCGAGAGATCGATC AACCTGTACAGTGGACACCGATCGACGCGAATGTA TGGCGGAATGCAGAGATGGTTC TTG TTTGTTTGTGTTTTTTC TTGC TTTGAAG TTTGAAAGATTC TGACCAAAGAAGGGCGCCGTATCCGGGAG TTTG TTTCGTCGTCG TTTGCTTCGTTTGAC GATGATGAACCAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTGGCTAGTAGTGTAGTGGTAGTAGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCATTCCGTTAT ACTAGAGGCT AGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAA GCAAGCTTGCC GTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAATTGAAGAATTTACCATTTGTCACTCTACCAAAAAAAA ] [+] EMBL AU056888 [ GGTAGTNGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCATTCCGTTATNACTAGAGGCTAAGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTGGTAAAAGANAANACTGAGACTGATGTTTGTTAGATGCGTAA GCAAGCTTGCC GTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAATTGAAGAATTTACCATTTGTCACTCTACCAAAATACTAGTGCTCAAATGCCACTCTCCCAAATATTCATTCCTAAATGTCACCCGGACCTCACCACTTATGTTTGAATGAAAAGTGAGGCTGACATGTGCGTTCGGATGGCATTTGGGAATGAAAATTTAGGAGAGTGGTATTTGAGTGCTATCATTTTGGTAGTTGCAAATAGTAAATTCTCCCCCTATTTTCTATGACACTAAACTCAGCCCAATACTATAAATTGGACTAAAATATATTTTGAAACGGAGGTAGTAGTATAACATATAAAAAA] [+] EMBL BM414929 [ agcTTCATTCCGTTAT AGTAGAGGCT AGTTGTCAGTTGGTTACCTGAACTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAAGGCAAGCTTGCCGGTAATTGTGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTT AGCTTTCAATTGAAGAATTTACCATTTGTCACTCTA ] [+] EMBL BM414931 [ agcTTCATTCCGTTAT AGTAGAGGCT AGTTGTCAGTTGGTTACCTGAACTGAACTGATGCAGTGGTTGGTAAAAGAAAAAACTGAGACTGATGTTTGTTAGATGCGTAA GCAAGCTTGCC GTAATTGTGGCGTGTTGATA ] consensusID : consensus_12483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCCTCGAGACAGAGCGAACTCTAGTGAACAAGCAAGAGGCCTAGACGCCAACGCAAGCTTAGCACATTCATGCCGCGCAGCACGCGCTCGCAGCACAAGGGTTCTCGTCCGTGGACGTCGCGTGTGGCCGCGGCGGCGGACCCGGCGTCGCGGTGCCTGGCGCTGTCCCTGCTGGCGCTCCTGCTGGTGTGCTCGCTCGGCCCCGGTGGCGCCCCCGGCGGCTCCCTCCTTTCCGGTGTGGCGTCTCTGTTGCCCGGCCCGGCTCTGTCGGCGCGCGCGTGCGACTCACTCTACTTGTCGTGGGTTGTGGTGACGCTGCACAGGCTCAGCGACAAGCGCGGCGCCCCGTACATCCTGGAGCACAACCCGCACGTCCACGACCCCGACCACCTCTTCCCCGGCCTCGGCGTCCAGATCGCGCCGTCCGAGCCCGGGTACATTCCCACAGATCACGTCCATCCTCTATCTGGACTCCATCGCCACTCGGGGCCTGCAGTGGTCTACGTCGTTTCTTGCTCCCTTGTCCGT] [+] EMBL CA756357 [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCCTCGAGACAGAGCGAACTCTAGTGAACAAGCAAGAGGCCTAGACGCCAACGCAAGCTTAGCACATTCATGCCGCGCAGCACGCGCTCGCAGCACAAGGGTTCTCGTCCGTGGACGTCGCGTGTGGCCGCGGCGGCGGACCCGGCGTCGCGGTGCCTGGCGCTGTCCCTGCTGGCGCTCCTGCTGGTGTGCTCGCTCGGCCCCGGTGGCGCCCCCGGCGGCTCCCTCCTTTCCGGTGTGGCGTCTCTGTTGCCCGGCCCGGCTCTGTCGGCGCGCGCGTGCGACTCACTCTACTTGTCGTGGGTTGTGGTGACGCTGCACAGGCTCAGCGACAAGCGCGGCGCCCCGTACATCCTGGAGCACAACCCGCACGTCCACGACCCCGACCACCTCTTCCCCGGCCTCGGCGTCCAGATCGCGCCGTCCGAGCCCGGGTACATTCCCACAGATCACGTCCATCCTCTATCTGGACTCCATCGCCACTCGGGGCCTGCAGTGGTCTACGTCGTTTCTTGCTCCCTTGTCCGT] consensusID : consensus_12483#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [AACTCTAGTGAACAAGCAAGAGGCCGAGACGCCAACGCAAGCTTAGCACAGTCATGGCGAGCAGCAGGCGGCAGCAGCACAAGGGTTCGTGGTCGTGGACGTCGCGGGTGGCGCCGGCGGCGAGCAGCGGGGTGGTGTGGCGGCGGTGTTGCGCGGCGCGGCGCTGTCGGCGCGGGCGTGCGAGGAGATCTACGTGGTGGCGGAGGGGGAGACGCTGCACAGCATCAGCGACAAGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGTCCAAGCCCAGGTAGATTACCACAAATCACATCGACACGGGATATGGACTCCATCGCCACTCGAGGGATGAACTGGTCAACGTGTATGAAACACACAAGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGATCTGGATTCGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATATGTGAATATAAAAAAAAAAAAAAAAAAA] [+] EMBL BP184715 [AACTCTAGTGAACAAGCAAGAGGCCGAGACGCCAACGCAAGCTTAGCACAGTCATGGCGAGCAGCAGGCGGCAGCAGCACAAGGGTTCGTGGTCGTGGACGTCGCGGGTGGCGCCGGCGGCGAGCAGCGGGGTGGTGTGGCGGCGGTGTTGCGCGGCGCGGCGCTGTCGGCGCGGGCGTGCGAGGAGATCTACGTGGTGGCGGAGGGGGAGACGCTGCACAGCATCAGCGACAAGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGTCCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGTCCAAGCCCAGGTAGATTACCACAAATCACATCGACACGGGATATGGACTCCATCGCCACTCGAGGGATGAACTGGTCAACGTGTATGAAACACACAAGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGATCTGGATTCGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATATGTGAATATAAAAAAAAAAAAAAAAAAA] [+] EMBL AB088484 [ AAGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGATCTGGATTCGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATATGTGAATATAcacgcg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12483#1 ------------------------------------------------------------ consensus_12483#2 ------------------------------------------------------------ consensus_12483#0 GGGGCGGCTGGCGGCGGCGCGGCCGTGCGAGGAGATATACGTGGTGGAGGAAGGGGAGAC 60 consensus_12483#1 ------------------------------------------------------------ consensus_12483#2 ------------------------------------------------------------ consensus_12483#0 GCTGCACAGCATCAGCGACAGGTGCGGCGACCCGTACATCCTGGAGCAGAACCCGCACGT 120 consensus_12483#1 ----------------------------------------------------------AG 2 consensus_12483#2 ------------------------------------------------------------ consensus_12483#0 CCACGACCCCGACGACGTCTTCCCCGGCCTCGTCATCAAGATCACGCCGCGCCCCGGCCG 180 consensus_12483#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 62 consensus_12483#2 ------------------------------------------------------------ consensus_12483#0 CCGCAACTGAACTGAACTTGCTGATCGATCAACGCGTTGATCTATCTCTGATCGATCGAG 240 consensus_12483#1 AGAGACTCCTCGAGACAGAGCGAACTCTAGTGAACAAGCAAG-AGGCCTAGACGCCAACG 121 consensus_12483#2 ----------------------AACTCTAGTGAACAAGCAAG-AGGCCGAGACGCCAACG 37 consensus_12483#0 AGATCGATCAACCTGTACAGTGGACACCGATCGACGCGAATGTATGGCGGAATGCAGAGA 300 ** * * ** * * * * * * * ** * consensus_12483#1 CAAGCTTAGCACATTCATGCCGCGCAGCACGCGCTCGCAGCACAAGGGTTCTCGTCCGTG 181 consensus_12483#2 CAAGCTTAGCACAGTCATGGCGAGCAGCAGGCGGCAGCAGCACAAGGGTTCGTGGTCGTG 97 consensus_12483#0 TGGTTCTTGTTTGTTTGTGTTTTTT--CTTGCTTTGAAGTTTGAAAGATTCTGACCAAAG 358 * * * ** * ** ** * *** * consensus_12483#1 GACGTCGC-GTGTGGCCGCGGCGGCGGACCCGGCGTCGCGGTGCCTGGCGCTGTCCCTGC 240 consensus_12483#2 GACGTCGC-GGGTGGCGCCGGCGGCGA-----GCAGCGGGGTG----------------- 134 consensus_12483#0 AAGGGCGCCGTATCCGGGAGTTTGTTTCGTCGTCGTTTGCTTCGTTTGACGATGATGAAC 418 * * *** * * * * * * consensus_12483#1 TGGCGCTCCTGCTGGTGTGCTCGCTCGGCCCCGGTGGCGCCCCCGGCGGCTCCCTCCTTT 300 consensus_12483#2 ------------------------------------------------------------ consensus_12483#0 CAGAACCACACGTACTGGAACAGAGGACGCTGCGAGTGGCTACTGGCTAGTAAGTNGCTA 478 consensus_12483#1 CCGGTGTGGCGTCTCT-GTTGCCCGGCCCGGCTCTGTCGGCGCGCGCGTGCGACTCACTC 359 consensus_12483#2 ---GTGTGGCGGCGGT-GTTGCGCGGCGCGGCGCTGTCGGCGCGGGCGTGCGAGGAGATC 190 consensus_12483#0 GTAGTGTAGTGGTAGTAGTTAGGCAGGCAACCTTGCCTGGTGTGTGTGTGCTTTGTTCAT 538 **** * * * *** * * * ** * * * **** consensus_12483#1 TACTTGTCGTGGGTTG--TGGTGAC-GCTGCACAGGCTCAGCGA-CAAGCGCGGCGCCCC 415 consensus_12483#2 TACGTGGTGGCGGAGG--GGGAGAC-GCTGCACAGCATCAGCGA-CAAGTGCGGCGACCC 246 consensus_12483#0 TCCGTTATACTAGAGGCTAGTTGTCAGTTGGTTACCTGAAGTGAACTGATGCAGTGGTTG 598 * * * * * * * * * ** * ** ** * ** * * consensus_12483#1 GTACATCCTGGAGCACAACCCGCACGTCCACGAC---CCCGACCACCTCTTCCCCGGCCT 472 consensus_12483#2 GTACATCCTGGAGCAGAACCCGCACGTCCACGAC---CCCGACGACGTCTTCCCCGGCCT 303 consensus_12483#0 GTAAAAGAAAAAACTGAGACTG-ATGTTTGTTAGATGCGTAAGCAAGCTTGCCGTAATTG 657 *** * * * * * * * ** * * * * * ** consensus_12483#1 CGGCGTCCAGATCGCGCCGT--CCGAGCCCGGGTACATTCCCACA-GATCACGTCCATCC 529 consensus_12483#2 CGTCATCAAGATCACGCCGT--CCAAGCCCAGGTAGATTACCACA-AATCACATCGACAC 360 consensus_12483#0 TGGCGTGTTGATAAAAGTGCGGCTAAGAAATAGTTAAGTGTAATATAGTTAAGCTTTCAA 717 * * * *** * * ** ** * * * * * * consensus_12483#1 TCTATCTGGACTCCATC-GCCACTCGGGGCCTGCAGTGGTCTACGT-CGTTTCTTGCTCC 587 consensus_12483#2 GGGATATGGACTCCATC-GCCACTCGAGGGATGAACTGGTCAACGTGTATGAAACACACA 419 consensus_12483#0 TTGAAGAATTTACCATTTGTCACTCTACCAAAAAAAAAGTGCTCAAATGCCACTCTCCCA 777 * **** * ***** * ** * * * consensus_12483#1 CTTGTCCGT--------------------------------------------------- 596 consensus_12483#2 AGTGTTCGTCCGAGAGCATCGCGCAGGCCTGGAATGGATCGATGCATCAAAACGCGCGAT 479 consensus_12483#0 AATATTCATTCCTAAATGTCACCCGGACCTCACCACTTATGTTTGAATGAAAAGTGAGGC 837 * * * * consensus_12483#1 ------------------------------------------------------------ consensus_12483#2 CTGGATT--CGATCGATGTATCTCTGCAAATGTAACTGGCAAGGAACATCAGTTCTGATA 537 consensus_12483#0 TGACATGTGCGTTCGGATGGCATTTGGGAATGAAAATTTAGGAGAGTGGTATTTGAGTGC 897 consensus_12483#1 ------------------------------------------------------------ consensus_12483#2 TGTGAATATAAAAAAAAAAAAAAAAAAA-------------------------------- 565 consensus_12483#0 TATCATTTTGGTAGTTGCAAATAGTAAATTCTCCCCCTATTTTCTATGACACTAAACTCA 957 consensus_12483#1 ------------------------------------------------------------ consensus_12483#2 ------------------------------------------------------------ consensus_12483#0 GCCCAATACTATAAATTGGACTAAAATATATTTTGAAACGGAGGTAGTAGTATAACATAT 1017 consensus_12483#1 ------ consensus_12483#2 ------ consensus_12483#0 AAAAAA 1023 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||