These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1996 fasta sequence [CTCTTCTTCTTTGTCAACGCTACTAAGGACCTGACGGTTCGCCTACTGGATGAATGAAAGAACATGAGAAAGGGTTATAAAACATACAAACTTTTGTTTGTGACCAAATGATCTTCTTATGCAGCTTATTCAATATCTTCATCTGAAAAAGTGGCTGCAGGATGAGAGGGTCATGAAAACAACATCGGCGTCAAAGCTTGGCAAGTTAATGCACCATCGTTTCCTAGAAAGTATTTCATTGAATAAGGCTTGAGTTGTATTATATGGTGCTAATAATAATTTGGAACTTTCACATCAATGAAGTCCAGCTTTTGAACTGATCAAAAGGGCTTTGCACATGAACAGAGGGCTCCTTGATTGCTAACTTGGAGATATCTAATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTGCACGTTCCATTACAACCATAAAGCTTCAAAAAACAGAGGAACTCCAGCACTGAGCAATAGATACATCGTGGGGATATCATATACTACATAAGTACGTCTTAAATCACAGGTATGTGCAAACAGAAGAAAACTGATCACTCCAGTACCAGAAGGTGGCTTACACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTATGGAGGCATTTTCACATGACAATGTGGAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATTTCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGTCAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACCCCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAGCTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAGAACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATACACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTTGTTCTCCTCAGGCCTCATATGCTCGGTTGTGGAGTCACCGATAGCTCTTTGCGGTATAAATACGTTCACTAATCGATTTGTACTCAATTTACATATTCATATGTTTTATACAATGGTAGTTTGTACTCAATTCACATATTCATATGCTTATACAATGGTAGGCTA] [+] EMBL AK110946 [CTCTTCTTCTTTGTCAACGCTACTAAGGACCTGACGGTTCGCCTACTGGATGAATGAAAGAACATGAGAAAGGGTTATAAAACATACAAACTTTTGTTTGTGACCAAATGATCTTCTTATGCAGCTTATTCAATATCTTCATCTGAAAAAGTGGCTGCAGGATGAGAGGGTCATGAAAACAACATCGGCGTCAAAGCTTGGCAAGTTAATGCACCATCGTTTCCTAGAAAGTATTTCATTGAATAAGGCTTGAGTTGTATTATATGGTGCTAATAATAATTTGGAACTTTCACATCAATGAAGTCCAGCTTTTGAACTGATCAAAAGGGCTTTGCACATGAACAGAGGGCTCCTTGATTGCTAACTTGGAGATATCTAATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTGCACGTTCCATTACAACCATAAAGCTTCAAAAAACAGAGGAACTCCAGCACTGAGCAATAGATACATCGTGGGGATATCATATACTACATAAGTACGTCTTAAATCACAGGTATGTGCAAACAGAAGAAAACTGATCACTCCAGTACCAGAAGGTGGCTTACACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTATGGAGGCATTTTCACATGACAATGTGGAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATTTCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGTCAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACCCCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAGCTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAGAACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATACACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTTGTTCTCCTCAGGCCTCATATGCTCGGTTGTGGAGTCACCGATAGCTCTTTGCGGTATAAATACGTTCACTAATCGATTTGTACTCAATTTACATATTCATATGTTTTATACAATGGTAGTTTGTACTCAATTCACATATTCATATGCTTATACAATGGTAGGCTA] [+] EMBL C27980 [ CAATACCCTATGGAGGCATTTTCACATGACAATGTGGAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATTTCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGTCAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTG ] [+] EMBL AU093289 [ CTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACCCCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAGCTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAGAACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATACACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTTGGCGGCGTCGAAGAGG CGACGACGTncg ] consensusID : consensus_12494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1354 fasta sequence [ACGTGTACGCGTTTCAGCGGAAGCCTGGAAAGATGCTTCGAGAAGAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTCGCATACATTGGATGGATGGCACATTGACGAAGCGGA] [-] EMBL AK071970 [ACGTGTACGCGTTTCAGCGGAAGCCTGGAAAGATGCTTCGAGAAGAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGCAAAGTCAATTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTCGCATACATTGGATGGATGGCACATTGACGAAGCGGA] [+] EMBL CB682417 [ TATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAAACGTGATTCACAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAAATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGGGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAAATTCTTCTGTAAAACTTGGGGAATTTGTATTTTCGGGGCTATGGTATCACCGATGACTTCTCATCCAAAACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACAACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAAATCCGGGATGGGAGTTGTGAAAATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCAATCCAATTTGCACTTTTCACCAAAACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATG ] consensusID : consensus_12494#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1315 fasta sequence [GAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT] [-] EMBL AK065577 [GAATATTTTGCCAATTGGTCATACATATTACATGGTCGCTGGCCAACTTTCTTTTATGACTCGGCTCAAACTTTTAATCCATGGTCTCTGAAAACTTAATATAGACGTGATTCACAAAAAAAAAAAACAGAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTCGTGTGGTGGTTGTCATAAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGCCACACGATTAACTCACTGGCATTTTTCAGCCTATCTGCAATAGATTCTTCTGTAAAACTTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGCACTTCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTCCACGACACCGGCAATTTTCTCCAAGCTTTCTGCTACCTTACCAAGATCCGGGATGGGAGTTGTGAAGATAACATCAAGTACATGATGGCCCTCCTTGGTAACCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAG ] [-] EMBL CB682416 [ GCGGTTCCAATCGATGGCCGCCTCCATACCTCTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTTTCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGAAGGCAAGTTTATCAGCTGATTTAACAATACCCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTTCCGACGGCCAATGACAGCGGTCATTGTGTCCTTTGGGTGCCTTCCTCGTAGCTGCTGACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAGGTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTCCACAAACCTGTCCACCGTGAGCTTGGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACGTCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGGGCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGTTGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGATGGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT] consensusID : consensus_12494#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTCAAGGCCATGTTTTCCCCCCTTGCAAAGCTTTCATTTGGAACCAAGGTTTCAAAAACATTTCAGGTAAAGAGCAACAGTACTTGAAGTACATACATATAAAGTTGGCCGATGTTCTGATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAGAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAGACTTTTAACTCATATGTCGTCGTCCAAAATTTTCAGATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGTGTCGACTTGCCCACACGCGCTGCTGCAGAAGGATTGATAGCTCGCCGGAGAAAGACGACGGAGCCCCTCCCCATGGAACAGCTGCAGCTGGCGATGGCCGGAGAGGCGGCAGATCGCCTGAATTCTCCCGAGGACCAACTCCGATGCCATGTTTGCCCAAGCAAGC] [+] EMBL CA759176 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTCAAGGCCATGTTTTCCCCCCTTGCAAAGCTTTCATTTGGAACCAAGGTTTCAAAAACATTTCAGGTAAAGAGCAACAGTACTTGAAGTACATACATATAAAGTTGGCCAATGTTCTAATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAAAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCAGGTATTCCTGTTTAAAAAACTTTTAACTCAAATGTCGTCGCCCAAAATTTTCAAATCTTTTGGAAGCTTCTCACGCTTTATGCGTGCAAGGCTCTAAGGATTTCTGATTGCATCCAGCATCCTGTCCAAAAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGGGACGACTTGCCCACACCCGCTGTTGCAAAAGGATTGATAGCTCGCCGGAAAAAGACAACGGACCCCCTCCCCATGGAACAGCTNCATCTGGCGATGGCCGGAAAGGCGGCAAATCGCCTGAATTCTCCCGAGGACCAACTCCNATGCCATGTTTGCCCAAGCAAGC] [-] EMBL AK120661 [ TTTCATAAACATTTCATGTAAAGAGCAACAGTACTTGAAGTACATACATATGAAGTTGGCCGATGTTCTGATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAGAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAGACTTTTAACTCATATGTCGTCGTCCAAAATTTTCAGATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGTGTCGACTTGCCCACACGCGCTGCTGCAGAAGGATTGATAGCTCGCCGGAGAAAGACGACGGAGCCCCTCCCCATGGAACAGCTGCAGCTGGCGATGGCCGGAGAGGCGGCAGATCGCCTGAATTCTCCCGAGGACCAACTCCGATGCCAT ] [-] EMBL CA767021 [ CCGATGTTCTGATCCATAATCTGGATCATAACAATAGCATCACAAACTCAAGTTAAGAATAGTACAGGGTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAGACTTTTAACTCATATGTCGTCGTCCAAAATTTTCAGATCTTTTGGAAGCTTCTCACGCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATTCAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACTGATCCTTGATCGTCGTGTCGACTTGCCCACACGCGCTGCTGCAGAAGGATTGATAGCTCGCCGGAGAAAGACGACGGAGCCCCTCCCCATGGAACAGCTGCAGCTGGCGATGGCCGGAGAGGCGGCAGATCGCCTGAATTCTCCCGAGGACCAACTCCGATGCCATGTTTGCCCccccct ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12494#1 ACGTGTACGCGTTTCAGCGGAAGCCTGGAAAGATGCTTCGAGAAGAATATTTTGCCAATT 60 consensus_12494#2 --------------------------------------------GAATATTTTGCCAATT 16 consensus_12494#0 ----CTCTTCTTCTTTGTCAACGCTACTAAGGACCTGACGGTTCGCCTACTGGATGAATG 56 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 GGTCATACATATTACATGGTCGCTGGCCA-----ACTTTCTTTTATGACTCGGCTCAAAC 115 consensus_12494#2 GGTCATACATATTACATGGTCGCTGGCCA-----ACTTTCTTTTATGACTCGGCTCAAAC 71 consensus_12494#0 AAAGA-ACATGAGAAAGGGTTATAAAACATACAAACTTTTGTTTGTGACCAAA--TGATC 113 consensus_12494#3 --------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTCAA---GGCC 43 * *** *** * consensus_12494#1 TTTTAATCCATGGTCTCTGAAAACTTAATAT--AGACGTGATTCACAAAAAAAAAAA-CA 172 consensus_12494#2 TTTTAATCCATGGTCTCTGAAAACTTAATAT--AGACGTGATTCACAAAAAAAAAAAACA 129 consensus_12494#0 TTCTTATGCAGCTTATTCAATATCTTCATCTGAAAAAGTGGCT-GCAGGATGAGAGGGTC 172 consensus_12494#3 ATGTTTTCCCCCCT-TGCAAAGCTTTCATTTGGAACCAAGGTTTCAAAAACATTTCAGGT 102 * * * * * * * ** ** * * * * * * consensus_12494#1 GAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTC 232 consensus_12494#2 GAAAAATTCACACGATTCTTCACAGTAACTGTAGATCTCGGGTTGTAAAATTCTCCGGTC 189 consensus_12494#0 ATGAAAACAACA----TCGGCGTCAAAGCT-----TGGCAAGTTAATGCACCATCGTTTC 223 consensus_12494#3 A-AAGAGCAACAGTACTTGAAGTACATACA-----TATAAAGTTGGCCGATGTTCTGATC 156 * * *** * * * *** * ** ** consensus_12494#1 GTGTGGTGGTTGTCAT-AAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGC 291 consensus_12494#2 GTGTGGTGGTTGTCAT-AAACCGAACGACAACAATGTCGTATGGTGAAAAAAAATACTGC 248 consensus_12494#0 CTAGAAAGTATTTCATTGAATAAGGCTTGAGTTGTATTATATGGTGCTAATAA-TAATTT 282 consensus_12494#3 C-ATAATCTGGATCAT--AACAA---TAGCATCACAAACTCAAGTTAAGAATAGTACAGG 210 **** ** * ** * * ** consensus_12494#1 CACACGATTAACTCACTGGCATTTTTCAGCCTATCTG--CAATAGATTCTTCTGTAAAAC 349 consensus_12494#2 CACACGATTAACTCACTGGCATTTTTCAGCCTATCTG--CAATAGATTCTTCTGTAAAAC 306 consensus_12494#0 GGAACTTTCACATCAATGAAGTCCAGCTTTTGAACTGATCAAAAGGGCTTTGCACATGAA 342 consensus_12494#3 GTCACTTTATACTACACAAACCGTCACGTTTCTTTTGATTCATGTATTCCTGTTTAAGAG 270 ** * * * ** * * * * consensus_12494#1 TTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGC 409 consensus_12494#2 TTGGTGAATTTGTATTTTCGGTGCTATGGTATCACCGATGACTTCTCATCCAAGACCTGC 366 consensus_12494#0 CAGAGGGCTCCTTGATT--GCTAACTTGGAGATATC--TAATCTTTTGGAAGCTTCTCAC 398 consensus_12494#3 ACTTTTAACTCATATGT--CGTCGTCCAAAATTTTC--AGATCTTTTGGAAGCTTCTCAC 326 * * * * * * * * * consensus_12494#1 ACT-TCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTC 468 consensus_12494#2 ACT-TCCCCGTTCAATGCAACTACGACATATGATGGAATGCTGGAAACTATCCCATGGTC 425 consensus_12494#0 GCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATT 458 consensus_12494#3 GCTGTATGCGTGCAAGGCTCTGAGGATTTCTGATTGCATCCAGCATCCTGTCCAAGAATT 386 ** * *** *** ** * ** * **** * ** * * * ** *** * * consensus_12494#1 CACGACACCGGCAATTTTCTCCA--AGCTT-----TCTGCTACCTTACCAA--------- 512 consensus_12494#2 CACGACACCGGCAATTTTCTCCA--AGCTT-----TCTGCTACCTTACCAA--------- 469 consensus_12494#0 CAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGCGATACT 518 consensus_12494#3 CAATGAACTGGCGATCTTCATGAGCAACCTGAGGATCTGAAAACCTATCGAAGC------ 440 ** ** *** ** *** * * * * **** * * ** * * consensus_12494#1 GATCCGGGATGGGA-GTTGTGAAGATAA--CATCAAGTACATGATGGCCCTCCTTGGTAA 569 consensus_12494#2 GATCCGGGATGGGA-GTTGTGAAGATAA--CATCAAGTACATGATGGCCCTCCTTGGTAA 526 consensus_12494#0 GATCCTGCACGTTCCATTACAACCATAAAGCTTCAAAAAACAGAGGAACTCCAGCACTGA 578 consensus_12494#3 GATACTGATCCTTG-------ATCGTCG--TGTCGACTTGCCCACACGCGCTGCTGCAGA 491 *** * * * * ** * * * * consensus_12494#1 CCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCT 629 consensus_12494#2 CCAATGGGAAGTCACCTCCTAATGGACCAGCGGTTCCAATCGATGGCCGCCTCCATACCT 586 consensus_12494#0 GCAATAGA----TACATCGTG--GGGATATCATATACTACATAAGTACGTCTTAAATCAC 632 consensus_12494#3 AGGATTGA----TAGCTCG-----------------CCGGAGAAAGACGACGGAGCCCCT 530 ** * * ** * * ** * * consensus_12494#1 CTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTT 689 consensus_12494#2 CTGCGTCTCCTAGGAACAAGTCATCAATCTCTTCAGCAGTGTCGATCCAATTTGCACTTT 646 consensus_12494#0 AGGTATGTGCAAACAGAAGAAAACTGATCACTCCAGTACCAG-AAGGTGGCTTACACTTT 691 consensus_12494#3 CCCCATGGAACAGCTGCAGCTGGC-GATGGCCGGAGAGGCGG-CAGATCGCCTG-AATTC 587 * * * ** * ** * * * ** consensus_12494#1 TCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGA 749 consensus_12494#2 TCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGA 706 consensus_12494#0 TCACCAAGACTGGAATTGAACCTTCGATGCCTTTCACATATTTTTCATGGCCAATGATGA 751 consensus_12494#3 TCCCGAGGACCAA--------CTCCGATGCC------ATGTTTGCCCAAGCAAGC----- 628 ** * * *** ** ******* ** *** * ** * consensus_12494#1 AGGCAAGTTTATCAGCTGATTTAACAATACCCT--------------------------- 782 consensus_12494#2 AGGCAAGTTTATCAGCTGATTTAACAATACCCT--------------------------- 739 consensus_12494#0 AGGCAAGTTTATCAGCTGATTTAACAATACCCTATGGAGGCATTTTCACATGACAATGTG 811 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 ------------------------------------------------------------ consensus_12494#2 ------------------------------------------------------------ consensus_12494#0 GAAAAGAAGAGAACAGATTACACCAAGGTTGTCTCGATGAGCAACTAAATGAATCTCATT 871 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 -----------------------TCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTT 819 consensus_12494#2 -----------------------TCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTT 776 consensus_12494#0 TCTGATGAGCTTTTTGAATACCTTCTCCACCATGAAAGAAGGCTCTCCGCTCTCCGTTTT 931 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 CCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGC 879 consensus_12494#2 CCGACGGCCAATGACAGCGGTCATTGTGTCCT---------------------------- 808 consensus_12494#0 CCGACGGCCAATGACAGCGGTCATTGTGTCCTCTTCAATTATATCAGCATCAGTGAAAGC 991 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 AAAGTCAAT--------------------------------------------------- 888 consensus_12494#2 ------------------------------------------------------------ consensus_12494#0 AAAGTCAATCTATATGTCAGTAAACACCGTTTCAGCAGTTCACCCACTTTCTCCCATTGT 1051 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 ------------------------------------TTGGGTGCCTTCCTCGTAGCTGCT 912 consensus_12494#2 ------------------------------------TTGGGTGCCTTCCTCGTAGCTGCT 832 consensus_12494#0 CAGCAAGATTTACAATGGTGAAAGAAATCAACATACTTGGGTGCCTTCCTCGTAGCTGCT 1111 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 GACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGAC-------------- 958 consensus_12494#2 GACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGAC-------------- 878 consensus_12494#0 GACCTGTATCCCTGCTTTCACTGCCTCACTTGCACTGATCGTGGACCTGGCTGATCAACC 1171 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 ------------------------------------------------------------ consensus_12494#2 ------------------------------------------------------------ consensus_12494#0 CCAAGAATGGATTAGATGCAACTGACAAAGCATGTCATCCAAGGAAATTCAGGTCAGGAG 1231 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 ------------------------------------------------------------ consensus_12494#2 ------------------------------------------------------------ consensus_12494#0 CTCATGCGTCCACTCTTGAAACAATGAGTGATCCAAAAAGAAGTTAGCTTCAGCAACCAG 1291 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 -------GAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAG 1011 consensus_12494#2 -------GAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAG 931 consensus_12494#0 AACTTACGAGGGTATTCCAAGGATGCCAGTGAGAGACCCTCGCCGGAGGCGAGTGCCGAG 1351 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 GTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTC 1071 consensus_12494#2 GTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTC 991 consensus_12494#0 GTACTGGATGGCGAGGCCGGACGCCGGGCCGGAGCCGAGCCCGACCACCATGCCGCTCTC 1411 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 CACAAACCTGTCCACC-------------------------------------------- 1087 consensus_12494#2 CACAAACCTGTCCACC-------------------------------------------- 1007 consensus_12494#0 CACAAACCTGTCCACCTGAGGCCAGGCCAGGCCAGCCACCGAGCTCGTCAGAATAATATA 1471 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 ----------------------------------------------------GTGAGCTT 1095 consensus_12494#2 ----------------------------------------------------GTGAGCTT 1015 consensus_12494#0 CACATGATCCAAGCGTCAACGAGCTGATGGAACAGTGGAGAATCCCCTCACCGTGAGCTT 1531 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 GGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACG 1155 consensus_12494#2 GGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACG 1075 consensus_12494#0 GGCGGCGTCGAAGAGGCCGACGACGTCGGCGTCCGCGGCGGCCGCGCAGGTCACAGCACG 1591 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 TCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGG 1215 consensus_12494#2 TCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGG 1135 consensus_12494#0 TCTCCGGCTACGGCGGCGCACGGTGGCCGGTGCGACGTTGCCGATGCGGCGGGGGCGTGG 1651 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 GCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGT 1275 consensus_12494#2 GCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGT 1195 consensus_12494#0 GCACGGGCGGAGCCGCGCCGAAGAGGAGCTCACGCTTGCCCCGGCAACGGCGTCCATGGT 1711 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 TGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTCGCATACATTGGATGGAT 1335 consensus_12494#2 TGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGAT 1255 consensus_12494#0 TGGGCTGGTGCCTCAGCTTGCTGGCCTAGCGAGCTTGACAGTTGCATACATTGGATGGAT 1771 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 GGCACATTGACGAAGCGGA----------------------------------------- 1354 consensus_12494#2 GGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT 1315 consensus_12494#0 GGCACATTGACGAAGCGGATAAGGGGTGCGAAGCAGGTGCAACACCAGCCTATTGTCCTT 1831 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 ------------------------------------------------------------ consensus_12494#2 ------------------------------------------------------------ consensus_12494#0 GTTCTCCTCAGGCCTCATATGCTCGGTTGTGGAGTCACCGATAGCTCTTTGCGGTATAAA 1891 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 ------------------------------------------------------------ consensus_12494#2 ------------------------------------------------------------ consensus_12494#0 TACGTTCACTAATCGATTTGTACTCAATTTACATATTCATATGTTTTATACAATGGTAGT 1951 consensus_12494#3 ------------------------------------------------------------ consensus_12494#1 --------------------------------------------- consensus_12494#2 --------------------------------------------- consensus_12494#0 TTGTACTCAATTCACATATTCATATGCTTATACAATGGTAGGCTA 1996 consensus_12494#3 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||