These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1288 fasta sequence [CGCCAACCATCACATCTGATCGAGAACAAGAAGAAGAAGAAGAAGAAGCAAGAACAGCAAGAGGAAGAGATGCAAATGGAGTCGTACTACGGCGCGTTCCACGCCGACGAGGCCGCGTTCTTCTTCCCCCACCACGTGCCGGCGTCGCCGGAGCTGCCGTTCGGCCTCATTGCGTCGCCGGAGCCGGAGCCGGAGCCGGAGCAGGCGGCGGCGGAGGCGAGGCAGAGCGCGTTCCAGGAGTACGGCGGCGCGGTGCACGCCGGAGCGCCGGCGGCGGCGGGGGCTGTCACCACCGGTGGGACGAACATCCACCGGAGGGTGATGGACGTGCTGGGCAGGATGGGCGGCGGCGGCGGCGGGGGGGAGAAGGGGGAGGGTGAGGAGATGGAGGAGGAGGAGGAGGTGCCGCAGCGGCGGCGG-CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCGAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGG-CCACGACGAGCAGCAG-CCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG-CATGTCCGGGAACA-GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT-CAAGG-AAGTAGAGAGGAACCAGCCTGACAGCGA-TGCCCCATTTCCTGGAAGC-AAAGGCTGGACACAGACATC-TCATGTG-CAAAATGTGTTTTG-ATCGGTTTTGAAACATGAT-CCTGC-TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA-CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAGGGAATCAGATTTGTCATATCTCAGTCTCTTCCTGTTCCAATCACAAAGGGATCAATTTCACATCCCACATAAACTCAAAAAAAAAAAA] [+] EMBL AK071734 [CGCCAACCATCACATCTGATCGAGAACAAGAAGAAGAAGAAGAAGAAGCAAGAACAGCAAGAGGAAGAGATGCAAATGGAGTCGTACTACGGCGCGTTCCACGCCGACGAGGCCGCGTTCTTCTTCCCCCACCACGTGCCGGCGTCGCCGGAGCTGCCGTTCGGCCTCATTGCGTCGCCGGAGCCGGAGCCGGAGCCGGAGCAGGCGGCGGCGGAGGCGAGGCAGAGCGCGTTCCAGGAGTACGGCGGCGCGGTGCACGCCGGAGCGCCGGCGGCGGCGGGGGCTGTCACCACCGGTGGGACGAACATCCACCGGAGGGTGATGGACGTGCTGGGCAGGATGGGCGGCGGCGGCGGCGGGGGGGAGAAGGGGGAGGGTGAGGAGATGGAGGAGGAGGAGGAGGTGCCGCAGCGGCGGCGG CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCGAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGG CCACGACGAGCAGCAG CCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGAGCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG CATGTCCGGGAACA GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGAAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAA ] [+] EMBL AU162759 [ GCGGCGGACGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGA CGCCAGCCGCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCAAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGG CCACGACGAGCAGCAG CCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG CATGTCCGGGAACAGGGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT CAAGGAAAGTAGAGAGGAACCAGCCTGACAGCGATTCCCCCATTTCCTGGAAGCAAAAGGCTTGACACAGACATCTTCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGCTTGGGANCCCCATTTGTTCATTTTTTTAAAAGCTTGTTATTGAGCNAATTGAAAAAAAATTTCCATATCTCCTTGTCAATGTACTTTTTTTTTGTCCATGTAGATACAATCATACAA ] [+] EMBL AU057590 [ actnaAAGCCCCAGATCATGGGCCCACGACGANCAGCAGCCCGTGCNTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATCGACTCCATGATCNCCGCGCTCCGGCGGCTCAAGGNCATGAGCGTCAAGGCGCGCGGGATCCGGTCGAG CATGTCCGGGAACA GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TNCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAGGGAATCAGATTTGTCATATCTCAGTCTCTTCCTGTTCCAATCACAAAGGGATCAATTTCACATCCCACATAAACTCAAAAAAAAAAAA] [+] EMBL AU056829 [ GCGCGGGATCCGGTCGAGCCATGTCCGGGAACA GGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCGGCTTGTGAAGTGGAAAAGGCNGTGGAAGAGGCTCTCCAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAGGGAATCAGATTTGTCAaaaaaaaa ] [-] EMBL BU673046 [ GGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC CAAGGCTGGACACCGACCTC TCAAGGGCCAAAATGTGTTTGGAATCGGTTTTGAAACATGATCCCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACNAAAAAGATTTAAGCAGCTTGT ] [+] EMBL BU673864 [ gGGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTG ] [-] EMBL CB965075 [ GGAAAAGGCAGTGGAAGAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTACCAAGGAAAAAAGAAAGAGAAGAGTAC AAAAAGATTTAAGCAGCTTGT ] [-] EMBL CB966583 [ GAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CAAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTTTTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTA CAAGGAAAAAAGAAAGAGAAGAGTACA ] [-] EMBL CB966761 [ GAGGCTCT CAAGG AAGTAGAGAGGAACCAGCCTGACAGCGA TGCCCCATTTCCTGGAAGC AAAGGCTGGACACAGACATC TCATGTG CNAAATGTGTTTTG ATCGGTTTTGAAACATGAT CCTGC TGGGACCCCCATTTGTTCATTTTTTTAAAAGCTTGTGATGGAGCAAGTGG AAAAAAATCTCCATATCTCC TGTCAATGTACCTTTTTTTTGTCCATGTAGATAC ATCATAC AATAATAGCTTCCTCTCTTTTCTA C AGG AAAAAG AAGAGAAGAGTA ] consensusID : consensus_12496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [TCAAATGCAGGCGAGCAACGGCAGCGGCGGCGGCGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCAAGGGGGACAAGAACTCGATCGTGCAGTCGCGGCGATCTACATCCACNAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCTTNTTTTTTTNCTCGACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACAAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGACGTCAAGCGCGCGGGATCCGGTCNACATGTCCGGGAACAGGCTGTGGACGGAATNACTCAACACCATTGCNGCTTGTGAATGNAAAAGGCNTTGAAGCTCTCCCNGNAATAAAGA] [+] EMBL AA752885 [TCAAATGCAGGCGAGCAACGGCAGCGGCGGCGGCGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGCCAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGCTCCAAGGGGGACAAGAACTCGATCGTGCAGTCGCGGCGATCTACATCCACNAGCTGAAGGTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCTTNTTTTTTTNCTCGACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACAAGCCGTCGTCGTCGATCGACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGACGTCAAGCGCGCGGGATCCGGTCNACATGTCCGGGAACAGGCTGTGGACGGAATNACTCAACACCATTGCNGCTTGTGAATGNAAAAGGCNTTGAAGCTCTCCCNGNAATAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12496#0 CGCCAACCATCACATCTGATCGAGAACAAGAAGAAGAAGAAGAAGAAGCAAGAACAGCAA 60 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 GAGGAAGAGATGCAAATGGAGTCGTACTACGGCGCGTTCCACGCCGACGAGGCCGCGTTC 120 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 TTCTTCCCCCACCACGTGCCGGCGTCGCCGGAGCTGCCGTTCGGCCTCATTGCGTCGCCG 180 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 GAGCCGGAGCCGGAGCCGGAGCAGGCGGCGGCGGAGGCGAGGCAGAGCGCGTTCCAGGAG 240 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 TACGGCGGCGCGGTGCACGCCGGAGCGCCGGCGGCGGCGGGGGCTGTCACCACCGGTGGG 300 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 ACGAACATCCACCGGAGGGTGATGGACGTGCTGGGCAGGATGGGCGGCGGCGGCGGCGGG 360 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 GGGGAGAAGGGGGAGGGTGAGGAGATGGAGGAGGAGGAGGAGGTGCCGCAGCGGCGGCGG 420 consensus_12496#1 ---------------------------TCAAATGCAGGCGAGCAACGGCAGCGGCGGCGG 33 * * * *** * ************* consensus_12496#0 CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGC 480 consensus_12496#1 CGCGGGCAGGGCGCCGACGTGGAGAGCAGCCGCGGTTTCCGCCACATGATGCGCGAGCGC 93 ************************************************************ consensus_12496#0 CAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGC 540 consensus_12496#1 CAGCGCCGCGAGAAGCTCAGCCAGAGCTACGCCGACCTCTACGCCATGGTCTCCTCTCGC 153 ************************************************************ consensus_12496#0 TCCGAGGGGGACAAGAACTCGATCGTGCAGTCGGCGGCGATCTACATCCACGAGCTGAAG 600 consensus_12496#1 TCCAAGGGGGACAAGAACTCGATCGTGCAGTCG-CGGCGATCTACATCCACNAGCTGAAG 212 *** ***************************** ***************** ******** consensus_12496#0 GTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCAGATCATGGGCCAC 660 consensus_12496#1 GTCGCGAGGGACCAGCTGCAGAGGAGGAACGAGGAGCTGAAGGCCCTTNTTTTTTTNCTC 272 ********************************************** * * * * consensus_12496#0 GACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACGAGCCGTCGTCGTCGATC 720 consensus_12496#1 GACGAGCAGCAGCCGTGCGTCACGGTGCAGTTCGAGGTCGACAAGCCGTCGTCGTCGATC 332 ****************************************** ***************** consensus_12496#0 GACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGAGCGTCAAGGCGCGCGGGATC 780 consensus_12496#1 GACTCCATGATCGCCGCGCTCCGGCGGCTCAAGGGCATGA-CGTCAAG-CGCGCGGGATC 390 **************************************** ******* *********** consensus_12496#0 CGGTCGAGCATGTCCGGGAACAGGCTGTGGACGGAGATGAACGTCGAGACCACGATTGCG 840 consensus_12496#1 CGGTCNA-CATGTCCGGGAACAGGCTGTGGACGGA-ATNA--CTCAA---CACCATTGCN 443 ***** * *************************** ** * ** * *** ***** consensus_12496#0 GCTTGTGAAGTGGAAAAGGCAGTGGAAGAGGCTCTCAAGGAAGTAGAGAGGAACCAGCCT 900 consensus_12496#1 GCTTGTGAA-TGNAAAAGGCNTTGAA----GCTCTCCCNGNAATAAAGA----------- 487 ********* ** ******* ** * ****** * * ** *** consensus_12496#0 GACAGCGATGCCCCATTTCCTGGAAGCAAAGGCTGGACACAGACATCTCATGTGCAAAAT 960 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 GTGTTTTGATCGGTTTTGAAACATGATCCTGCTGGGACCCCCATTTGTTCATTTTTTTAA 1020 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 AAGCTTGTGATGGAGCAAGTGGAAAAAAAATCTCCATATCTCCTTGTCAATGTACCTTTT 1080 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 TTTTGTCCATGTAGATACAATCATACAAATAATAGCTTCCTCTCTTTTCTACAAGGAAAA 1140 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 AAGAAAGAGAAGAGTACAAAAAAGATTTAAGCAGCTTGTTTATCAGTTAAAAAAGAAAAG 1200 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 GGAATCAGATTTGTCATATCTCAGTCTCTTCCTGTTCCAATCACAAAGGGATCAATTTCA 1260 consensus_12496#1 ------------------------------------------------------------ consensus_12496#0 CATCCCACATAAACTCAAAAAAAAAAAA 1288 consensus_12496#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||