These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1045 fasta sequence [AAAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT-AGTCGACCTAAGGGCAACCGA-TTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAA-GCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCT-CGCAGAGAGGAAGAATCGAGCTCCT-TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAAAAAAAAAGGTGCATTTTGGCAATCTTCTTTCTGCCTATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTGCGTAGCGA] [+] EMBL C72691 [AAAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTNGCTTAGTTCCTAAGCGTAGTAAGTCGACCTAAGGGCAACCGATTTAGATAA ] [+] EMBL AU223335 [ AAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACCCAGAGCTTATTAAGCG ] [+] EMBL CF295332 [ tagAAAATAAGGAAAAAAACCTCCACTACGCTAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAATGTTGACAAGCACCGAGAGAATTATCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAA GCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCT CGCAGAGAGGAAGAATCGAGCTCCT TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGA ] [+] EMBL AU091758 [ AAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGANAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCT ] [+] EMBL AK103638 [ AAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCGGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAA GCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCT CGCAGAGAGGAAGAATCGAGCTCCT TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATG ] [+] EMBL OS0605A [ CGTCTTCCTCCGCCGAATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTNAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTNGCTTAGTTCCTAAGCGTAGT AGTCGACCTAAGGGCAACCGA TTAGATAAGCATGAGTACGCAGAG TTATTAAGCGAGGATCAACTTCAGAAGATTTGGGT CTGGACATGTTG ] [+] EMBL BI813499 [ ttGGT CTGGACATGCTGAACGCAGCACAAGTCCCAGGTCTAGGTTTATACAAGGGTCCTCCGCAGAGAGGAAGAATCGAGCTCCTGTTAACCTTGATCCTCCAGAAATGGTGCCC CTGAGCAGGCTGACAACCCTCCACCGGAAACC AACCGGAACGTGAAGATTCCGATGATGATCGTAGGA C AAAGGAGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTTTATACTCTTCTTGAATAC TTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAAAAAAAAA ] [-] EMBL CF295331 [ TGCAGGGTCTAGGTTTATACAAGGGTCCT CGCAGAGAGGAAGAATCGAGCTCCT TTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGACCGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAACATCAGCGGTGCATTTTGGCAATCTTCTTTCTGCCTATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTGCGTAGCGA] [+] EMBL AU223334 [ GAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAGCGGAAGCGAGAAAGGCNCTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGGAGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCNCCGCAAAGACAAGCACAAGAGGAGGCATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCCATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGTATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTGTAAAAAA ] consensusID : consensus_12498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGA] [+] EMBL CF306343 [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGCGTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAGAATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTGTTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGGAGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGTAGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGAGGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTAGGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCAGAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAAGATTCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12498#0 AAAAAAAAAAAAAAGGAAAAAAACCTCCACTACGCAAATCGTCGTCGTCTTCCTCCGCCG 60 consensus_12498#1 GAGAGAGAGAGAGAGAGAGAGAG--------AGAGAGAGAG------------------A 34 * * * * * * ** * * * * * * * consensus_12498#0 AATTCCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGC 120 consensus_12498#1 GAGAGCCCACCCCACCGGCGGCGCGACCGGGCGGAGATGTACCACCCGACGAGAGGCGGC 94 * ******************************************************* consensus_12498#0 GTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAG 180 consensus_12498#1 GTCCGCGGCGGACGGGATCAATTCAAATGGGATGATGTTAAGGTTGACAAGCACCGAGAG 154 ************************************************************ consensus_12498#0 AATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTG 240 consensus_12498#1 AATTACCTCGGTCATAGCATTAAGGCTCCTGTTGGAAGATGGCAGAAAGGGAAGGACCTG 214 ************************************************************ consensus_12498#0 TTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGG 300 consensus_12498#1 TTCTGGTATACAAAAGATAAGAAATCTGACTCAGAAGATGCTCTCAAGGAAGAAATCAGG 274 ************************************************************ consensus_12498#0 AGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGT 360 consensus_12498#1 AGAGTGAAGGAAGAGGAGGAGCAGTCCATGCGGGAGGCACTTGGCTTAGTTCCTAAGCGT 334 ************************************************************ consensus_12498#0 AGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGA 420 consensus_12498#1 AGTAGTCGACCTAAGGGCAACCGATTAGATAAGCATGAGTACGCAGAGCTTATTAAGCGA 394 ************************************************************ consensus_12498#0 GGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTA 480 consensus_12498#1 GGATCAACTGCAGAAGACTTGGGTGCTGGACATGCTGAAGCAGCACAAGTGCAGGGTCTA 454 ************************************************************ consensus_12498#0 GGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCA 540 consensus_12498#1 GGTTTATACAAGGGTCCTCGCAGAGAGGAAGAATCGAGCTCCTTTAACCTTGATCCTCCA 514 ************************************************************ consensus_12498#0 GAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAA 600 consensus_12498#1 GAAATGGTGCCCGCTGAGCAGGCTGACAACCCTCCACCGGAAACCAAACCGGAACGTGAA 574 ************************************************************ consensus_12498#0 GATTCCGATGATGATCGTAGGAGCAAAAGGGGGCGTGAGGAGAGGGGAGGGGAGAAAGAG 660 consensus_12498#1 GATTCCGA---------------------------------------------------- 582 ******** consensus_12498#0 CGGAAGCGAGAAAGGCACTCGGAAGGAAAGGAGAGGAGGCGTGACAAGCAAGAGAAGAGG 720 consensus_12498#1 ------------------------------------------------------------ consensus_12498#0 AGTCGGCATGAGTCGGACGACAGGTCGAAGCGCCACCGCAAAGACAAGCACAAGAGGAGG 780 consensus_12498#1 ------------------------------------------------------------ consensus_12498#0 CATGACTCTGATTCCGACTAGTTACTGCGGCTCTTTCAACCTGTCTCACTGTATCCTGCC 840 consensus_12498#1 ------------------------------------------------------------ consensus_12498#0 ATCATATTTCATGCCTTGCTACGTTTGCTTGATGATGATGTAGTTGTAAAAACAGCTTGT 900 consensus_12498#1 ------------------------------------------------------------ consensus_12498#0 ATACTCTTCTTGAATACATTGTCTGTTTTTAACTTGCACATGAGAAATATGTTGAACCTG 960 consensus_12498#1 ------------------------------------------------------------ consensus_12498#0 TAAAAAAAAAGGTGCATTTTGGCAATCTTCTTTCTGCCTATCAAAAAAAAAAAAAAAAAA 1020 consensus_12498#1 ------------------------------------------------------------ consensus_12498#0 ACACTGTCATGCCGTTGCGTAGCGA 1045 consensus_12498#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||