These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1417 fasta sequence [CATCAGACCTGATGGTGCTATAGTTCGGCCACCGATGGGGGCACCAATGCCTGGGCTGCATGATTCAACAGTTCCTCCTTTTGCTCCTGAATATGTTGGTCAGCCTCATCCTCTTGGAACTAAAAAGAACAATAGTGTTGGCAATGGACCACATGGAGGCTCAAGGGCTTTATTTGAAGGTGGATTCAATTCTTCACAGAAACATTCCAAGTCATGTGCAGCAAATCCTGGCAGAAACAACGTTAGCCACAAAGATTTTGAAGATAATATGAAGCAGTTTCCAGTGCCTACTCACCTTGACGGTGAAGGTCATCAAAGGGGTCCTAGACCTTTTGAAGGAGGTTTAGGTAGACCTGATGGTTTTGCTGATATATTACCTGGAAGGCCTCCATTGACAAATCATCCTGGTCCATTTCCTATAGGCTTCGGAGAAGATTACCCAAGGAAACCCAATTCGACTGTTAGTTATCCTGACTTTATTTCGCCTGGTGCAGAATTTGGTCATCGTGGTATTGATGGAATACCTACTCTTAGAAATGCAGGTCCATTTCTTCAAGGGATGACAGGCGGGCCTGGAGGTTTGCATAAAGATCAGCTAGGCTCTAGTAACTTTCCTGGGAGTGGACACCATGATTTTGACAACTCAGAGCTCCCTCGTACTCGATTCCATCCTGGTGATGCTTTTGTGCCAAGAAATCTGCACGGTGGTGGTTGGGGTGGTGGCCAATTGCATGGCATTGAGCCTTCTGACTATGGCTACAGAGGTCACATGCATGCAGATGATCCAAATATTCCAATTGATTATTCTCGGCATGGTTTTCCAAAAGAATCTGCCCACTTTGGTTCGGGTGGACACTTGAGAGATGGAGATGTCAGTTGGTGCCGTATATGCAATATTAGCTGTGGTACAGTAGAGAACCTGAATATACATGTAGAGACCAGGGAACACCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTTGCAAAGGGGAGAAAGAATTCCTTCAGGAATTCTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCATGTTGACGTTTTACCATGTTGTCATGTGGACTTTACCTGCTTTTGTGGAGTTCGTTGCTCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTACCTTGGACCTGCAATACTTTAATTTTGT] [+] EMBL AK060480 [CATCAGACCTGATGGTGCTATAGTTCGGCCACCGATGGGGGCACCAATGCCTGGGCTGCATGATTCAACAGTTCCTCCTTTTGCTCCTGAATATGTTGGTCAGCCTCATCCTCTTGGAACTAAAAAGAACAATAGTGTTGGCAATGGACCACATGGAGGCTCAAGGGCTTTATTTGAAGGTGGATTCAATTCTTCACAGAAACATTCCAAGTCATGTGCAGCAAATCCTGGCAGAAACAACGTTAGCCACAAAGATTTTGAAGATAATATGAAGCAGTTTCCAGTGCCTACTCACCTTGACGGTGAAGGTCATCAAAGGGGTCCTAGACCTTTTGAAGGAGGTTTAGGTAGACCTGATGGTTTTGCTGATATATTACCTGGAAGGCCTCCATTGACAAATCATCCTGGTCCATTTCCTATAGGCTTCGGAGAAGATTACCCAAGGAAACCCAATTCGACTGTTAGTTATCCTGACTTTATTTCGCCTGGTGCAGAATTTGGTCATCGTGGTATTGATGGAATACCTACTCTTAGAAATGCAGGTCCATTTCTTCAAGGGATGACAGGCGGGCCTGGAGGTTTGCATAAAGATCAGCTAGGCTCTAGTAACTTTCCTGGGAGTGGACACCATGATTTTGACAACTCAGAGCTCCCTCGTACTCGATTCCATCCTGGTGATGCTTTTGTGCCAAGAAATCTGCACGGTGGTGGTTGGGGTGGTGGCCAATTGCATGGCATTGAGCCTTCTGACTATGGCTACAGAGGTCACATGCATGCAGATGATCCAAATATTCCAATTGATTATTCTCGGCATGGTTTTCCAAAAGAATCTGCCCACTTTGGTTCGGGTGGACACTTGAGAGATGGAGATGTCAGTTGGTGCCGTATATGCAATATTAGCTGTGGTACAGTAGAGAACCTGAATATACATGTAGAGACCAGGGAACACCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTTGCAAAGGGGAGAAAGAATTCCTTCAGGAATTCTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCATGTTGACGTTTTACCATGTTGTCATGTGGACTTTACCTGCTTTTGTGGAGTTCGTTGCTCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTACCTTGGACCTGCAATACTTTAATTTTGT] consensusID : consensus_12503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 920 fasta sequence [GAAACAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTCTTGCATGCTTTCCTGAAGGCGGTAAGGATAGATGCACACTTAGCTTTTTCTATGTTGTGATTTAACTTAGCCACAGATCTTTGGCCAAAATATATAAGCTGATTATGCTAACCCTTTGTCAGTATGTTGAACTAGACCTGTAGAGACTAATTTCATATGTCCTAGACTGTTTCCATATTGGATCTTTTATGATTGATATGACATTTAGTTTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCTTTTGACCTTCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACANGNNNATCTGCATTGACATGTTTGCT] [+] EMBL CB632035 [GAAACAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTCTTGCATGCTTTCCTGAAGGCGGTAAGGATAGATGCACACTTAGCTTTTTCTATGTTGTGATTTAACTTAGCCACAGATCTTTGGCCAAAATATATAAGCTGATTATGCTAACCCTTTGTCAGTATGTTGAACTAGACCTGTAGAGACTAATTTCATATGTCCTAGACTGTTTCCATATTGGATCTTTTATGATTGATATGACATTTAGTTTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTAGGAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCT ] [+] EMBL CF195711 [ TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTNNNCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTNNNNTATCTTTTGACCTTCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACANGNNNATCTGCATTGACATGTTTGCT] [+] EMBL CF195654 [ TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAANNNNNAGTAGNNGTGn ] consensusID : consensus_12503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [TTTTCTTTATACTCGTATAAGGGACCGGGCCAACTGATATTTGTTAAGTAGGAAAAAATTAACAAATGATTACA-TTTATGTTGATACATCGAGTCATCAACTGCTTGATACATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAGTATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTCTTGAAATGCGGTCGGAGCTTGAGCTACTTGTTTAGCTTCCAGCATATCCATCATGAATGCCTCATTAGCTGCTACAAGACTTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCGAATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCCACCTTCACAGCAAAATAAATGCTAGTATGACTGCCTGCTACGGTGAGAACATCATGGCTAACTTAGTTCTTTTTAGATTATTTACATATTATCAATACTGATTATTTGCTCCAAGTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAATCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAATCAAGCAGATAATCTACAGCAACAATCCGCTCAATAATTTGATTCAAACTGAG] [+] EMBL CB632036 [TTTTCTTTATACTCGTATAAGGGACCGGGCCAACTGATATTTGTTAAGTAGGAAAAAATTAACAAATGATTACA TTTATGTTGATACATCGAGTCATCAACTGCTTGATACATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAGTATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTCTTGAAATGCGGTCGGAGCTTGAGCTACTTGTTTAGCTTCCAGCATATCCATCATGAATGCCTCATTAGCTGCTACAAGACTTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCGAATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCCACCTTCACAGCAAAATAAATGCTAGTATGACTGCCTGCTACGGTGAGAACATCATGGCTAACTTAGTTCTTTTTAGATTATTTACATATTATCAATACTGATTATTTGCTCCAAGTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAATCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAATCAAGCAGATAATCTACAGCAACAATCCGCTCAATAATTTGATTCAAACTGAG] [-] EMBL CA765823 [ GTAGGAAAAAATTACCAAATGATTNCATTTTATGTTGATACATCGAGTCATCAACTGCTTGATACATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAGTATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTCTTGAAATGCGGTCGGAGCTTGAGCTACTTGTTTAGCTTCCAGCATATCCATCATGAATGCCTCATTAGCTGCTACAAGACTTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCGAATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCCACCTTCACAGCAAAATAAATGCTAGTATGACTGCCTGCTACGGTGAGAACATCATGGCTAACTTAGTTCTTTTTAGATTATTTACATATTATCAATACTGATTATTTGCTCCAAGTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAATCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAATCAAGCAGA ] consensusID : consensus_12503#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [TAACGCGGCGGTTGTACGCCTCTGTATAGGGCCGAATGGGTTTCCGGGCCCCCGCCTGAGGTCCCCGGTATGGATAAGCTTGATTAGGTAAGCCAGGGCGAACCAAGGGGTCCCCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTGGCAAAGGGGAGAAAGAAGAATTTTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTCCTGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTTTTGCATGCTTTCCTGAAGGCGTCTTGTAGCAGCTAATGAGGCATTCATGATGGATATGCTGGAAGCTAAACAAGTAGCTCAAGCTCCGACCGCATTTCAAGAGCTCGAGTGGCCCAGGAATGTAGACAAACCGTCATACTCCAGCTTGCTGAATTTAATTATTTCATTGTAAAACAGTGTAGTTTCTTGCCCAGTAATGTATCAAGCAGTTAATGACTCGATGTATCAACATAAATGTAATCATTTGTTAATTTTTTTCCTACTTAACAAATATCAGTTGGACCTGTACATTATGCTAGTATAAAGAAAAAAAAAGAATATTATTTGTCAAAAAAAAAAAAAA] [-] EMBL CA760778 [TAACGCGGCGGTTGTACGCCTCTGTATAGGGCCGAATGGGTTTCCGGGCCCCCGCCTGAGGTCCCCGGTATGGATAAGCTTGATTAGGTAAGCCAGGGCGAACCAAGGGGTCCCCATCAACATGCAATGGACATTGTTCTGAAAATGAAGCAAGATGTGGCAAAGGGGAGAAAGAAGAATTTTGGTGGTCCCAAGTCATTCAAGAAAAAAGTACCTGGGAAGGGTAGCTTTCGTGGAAATAGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTCCTGAAATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTTTTGCATGCTTTCCTGAAGGCGTCTTGTAGCAGCTAATGAGGCATTCATGATGGATATGCTGGAAGCTAAACAAGTAGCTCAAGCTCCGACCGCATTTCAAGAGCTCGAGTGGCCCAGGAATGTAGACAAACCGTCATACTCCAGCTTGCTGAATTTAATTATTTCATTGTAAAACAGTGTAGTTTCTTGCCCAGTAATGTATCAAGCAGTTAATGACTCGATGTATCAACATAAATGTAATCATTTGTTAATTTTTTTCCTACTTAACAAATATCAGTTGGACCTGTACATTATGCTAGTATAAAGAAAAAAAAAGAATATTATTTGTCAAAAAAAAAAAAAA] consensusID : consensus_12503#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CGCTCCGCGTTCTCCCACAAGCTTCGCCCGCTCTCGGGCTCTGGCCGCGCCCTTCAAAAACCGTGTCTCCCCTGTTGTCCGCTCTTCCCCCTTATTCCGTGGGTCCCCTCACGCCCCCCGGATTTCCCCGTTAAGCGCCCGGGGGGCCCCCTTTCCGGGGCAAGGGGCTCTTTTTTCAACAAAAGACCCCCCATCTGTCCAAAAGGGGAAAAAAAATTCCTTTGGGGAATTTGGGTGGGCTCCCCAGTCCTTCAAAAAAAAAGGTCTCTTGGAAGGGGTACCTTTCGGGGAATTTGGCCTTAAAACCTCCTGTTATCTTGTTCCCTGGAAACCAGTGTGGAAAGGTTCCTGGTAATCCTTCGGGAACTATTTTAGGCCCTTGAATTTGGGTCTGGTCCATCCTTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCCCCCTTGGCGGTTTTTCCCACTTTCCTGTGGGCCTCTCCTGCCTTTGTGGAGGTCCGTTGCTCCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTATCTTGGACCTGCAAAAAA] [-] EMBL CA761996 [CGCTCCGCGTTCTCCCACAAGCTTCGCCCGCTCTCGGGCTCTGGCCGCGCCCTTCAAAAACCGTGTCTCCCCTGTTGTCCGCTCTTCCCCCTTATTCCGTGGGTCCCCTCACGCCCCCCGGATTTCCCCGTTAAGCGCCCGGGGGGCCCCCTTTCCGGGGCAAGGGGCTCTTTTTTCAACAAAAGACCCCCCATCTGTCCAAAAGGGGAAAAAAAATTCCTTTGGGGAATTTGGGTGGGCTCCCCAGTCCTTCAAAAAAAAAGGTCTCTTGGAAGGGGTACCTTTCGGGGAATTTGGCCTTAAAACCTCCTGTTATCTTGTTCCCTGGAAACCAGTGTGGAAAGGTTCCTGGTAATCCTTCGGGAACTATTTTAGGCCCTTGAATTTGGGTCTGGTCCATCCTTTTGGTTAAGGTAGTGCTGCATGTTTGGAATAGAATTACCCATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTTATGTTGCCGTTTTACCCCCCTTGGCGGTTTTTCCCACTTTCCTGTGGGCCTCTCCTGCCTTTGTGGAGGTCCGTTGCTCCCTATATTGGATGCTCAACTCACAACTCTGAGGATGCTTATCTTGGACCTGCAAAAAA] consensusID : consensus_12503#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTAGGAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCTTTTGACCTTCCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACACGTTTATCNNCNNNNNCATGNNTGCTNNNNNTTTTGNGANNNNNNNNN] [+] EMBL CF195797 [TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTAGGAGTAGTTGTGAAGTTAAGTGCTAGGCACAAAAGGCCAAATTTGAATAATTAAGTTGCTTGGTGTTGGGATTGAACCTATGTAGAATATCTTTTGACCTTCCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATGACCACACGTTTATCNNCNNNNNCATGNNTGCTNNNNNTTTTGNGANNNNNNNNN] consensusID : consensus_12503#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTNNNCACAAAAGGCCAAATTTNNNNNATTAAGTTGCTTGNNGTTNNNNNNNNNNCTATGNNNNN] [+] EMBL CF195720 [TTCTTTGTAAATAAAAACTGGTTGGACTAGCTGATCACATATAGAAATTGATTTAGTACAATGTTACAAGGCCTATAGATGTCAAGGACATTTTCTGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGATCATAATTAGTATCCACCATTTAGTTAGGGGAACCTTGAAAATATCCTAATGATGCAAAAGGTGTAGCTAACAATACCCTCACCATGGAATATGTCGTGGCTTTGGGCTGGAAAATGGTTCCACGACAATTATGACTAGCATCTAAGGAAGCATGGGAAATATACTAACTCACTGAAGTNNNAGTAGTTGTGAAGTTAAGTGCTNNNCACAAAAGGCCAAATTTNNNNNATTAAGTTGCTTGNNGTTNNNNNNNNNNCTATGNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 CATCAGACCTGATGGTGCTATAGTTCGGCCACCGATGGGGGCACCAATGCCTGGGCTGCA 60 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 TGATTCAACAGTTCCTCCTTTTGCTCCTGAATATGTTGGTCAGCCTCATCCTCTTGGAAC 120 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 TAAAAAGAACAATAGTGTTGGCAATGGACCACATGGAGGCTCAAGGGCTTTATTTGAAGG 180 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 TGGATTCAATTCTTCACAGAAACATTCCAAGTCATGTGCAGCAAATCCTGGCAGAAACAA 240 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 CGTTAGCCACAAAGATTTTGAAGATAATATGAAGCAGTTTCCAGTGCCTACTCACCTTGA 300 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 CGGTGAAGGTCATCAAAGGGGTCCTAGACCTTTTGAAGGAGGTTTAGGTAGACCTGATGG 360 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 TTTTGCTGATATATTACCTGGAAGGCCTCCATTGACAAATCATCCTGGTCCATTTCCTAT 420 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 -----------------------GAAACAAGTACCTGGGAAGGGTAGCTTTCGTGGAAAT 37 consensus_12503#0 AGGCTTCGGAGAAGATTACCCAAGGAAACCCAATTCGACTGTTAGTTATCCTGACTTTAT 480 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 AGGCGTTAGAACTCCTGTTATCTTGTTCCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAA 97 consensus_12503#0 TTCGCCTGGTGCAGAATTTGGTCATCGTGGTATTGATGGAATACCTACTCTTAGAAATGC 540 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 TGCTTCTGGAACTATCTGAGACCATTGAAATTGGGTCTTGTCCATACATTTTGGTTAAGA 157 consensus_12503#0 AGGTCCATTTCTTCAAGGGATGACAGGCGGGCCTGGAGGTTTGCATAAAGATCAGCTAGG 600 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 AATTGACAAGTTTAGGAAAAATCCCTGAGGGGGCTCAACTGTCGTTCTTGCATGCTTTCC 217 consensus_12503#0 CTCTAGTAACTTTCCTGGGAGTGGACACCATGATTTTGACAACTCAGAGCTCCCTCGTAC 660 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 TGAAGGCGGTAAGGATAGATGCACACTTAGCTTTTTCTATGTTGTGATTTAACTTAGCCA 277 consensus_12503#0 TCGATTCCATCCTGGTGATGCTTTTGTGCCAAGAAATCTGCACGGTGGTGGTTGGGGTGG 720 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 CAGATCTTTGGCCAAAATATATAAGCTGATTATGCTAACCCTTTGTCAGTATGTTGAACT 337 consensus_12503#0 TGGCCAATTGCATGGCATTGAGCCTTCTGACTATGGCTACAGAGGTCACATGCATGCAGA 780 consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 AGACCTGTAGAGACTAATTTCATATGTCCTAGACTGTTTCCATATTGGATCTTTTATGAT 397 consensus_12503#0 TGATCCAAATATTCCAATTGATTATTCTCGGCATGGTTTTCCAAAAGAATCTGCCCACTT 840 consensus_12503#4 ------------------------CGCTCCGC---GTTCTCCCACAAGCTTCGCCCGCTC 33 consensus_12503#3 ------------------------------------------------------------ consensus_12503#2 ---------TTTTCTTTATACTCGTATAAGGGACCGGGCCAACTGATATTTGTTAAGTAG 51 consensus_12503#5 ----------------TTCTTTGTAAATAAAAACTG----GTTGGACTAGCTGATCACAT 40 consensus_12503#6 ----------------TTCTTTGTAAATAAAAACTG----GTTGGACTAGCTGATCACAT 40 consensus_12503#1 TGATATGACATTTAGTTTCTTTGTAAATAAAAACTG----GTTGGACTAGCTGATCACAT 453 consensus_12503#0 TGG---TTCGGGTGGACACTTGAGAGATGGAGATGTCA--GTTGGTGCCGTATATGCAAT 895 consensus_12503#4 TCGGGCTCTGGCCGCGCCCTTCAAAAACCGTGTCTCCCCTGTTGTCCGCTCTTCCCCCTT 93 consensus_12503#3 TAACGCGGCGGTTGTACGCCTC-TGTATAGGGCCGAATGGGTTTCCGGGCCCCCGCCTGA 59 consensus_12503#2 GAAAAAATTAACAAATGATTACATTTATGTTGATACATCGAGTCATCAACTGCTTGATAC 111 * * consensus_12503#5 ATAGA-AATTGATTTAGTACAATGTTACAAGGCCTAT----AGATGTCAAGGACATTTTC 95 consensus_12503#6 ATAGA-AATTGATTTAGTACAATGTTACAAGGCCTAT----AGATGTCAAGGACATTTTC 95 consensus_12503#1 ATAGA-AATTGATTTAGTACAATGTTACAAGGCCTAT----AGATGTCAAGGACATTTTC 508 consensus_12503#0 ATTAG-CTGTGGTACAGTAGAGAACCTGAATATACATGT--AGAGACCAGGGAACACCAT 952 consensus_12503#4 ATTCC-GTGGGTCCCCTCACGCCCCCCGGATTTCCCCGTTAAGCGCCCGGGGGGCCCCCT 152 consensus_12503#3 GGTCC-CCGGTATGGATAAGCTTGATTAGGTAAGCCAGG-GCGAACCAAGGGGTCCCCAT 117 consensus_12503#2 ATTACTGTGCAAGAAACTACACTGTTTTACAATGAAATAATTAAATTCAGCAAGCTGGAG 171 * consensus_12503#5 TGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGA 155 consensus_12503#6 TGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGA 155 consensus_12503#1 TGACATTTCAACTGTATGGTAACCTGGAGAATCACCATTCTCTTCTAATGCAACATGGGA 568 consensus_12503#0 CAACATG-CAA-TGGACATTGTTCTGAAAATGAAGCA-----AGATGTTGCAAAGGGGAG 1005 consensus_12503#4 TTCCGGGGCAA-GGGGCTCTTTTTTCAACAAAAGACCC-CCCATCTGTCCAAAAGGGGAA 210 consensus_12503#3 CAACATG-CAA-TGGACATTGTTCTGAAAATGAAGCA-----AGATGTGGCAAAGGGGAG 170 consensus_12503#2 TATGACGGTTTGTCTACATTCCTGTGCCACTCGAGCTC-TTGAAATGCGGTCGGAGCTTG 230 * * * * consensus_12503#5 TCATAATTAGTA----TCCACCATTTAGTTAGG----GGAACCTTGAAAATATCCTAATG 207 consensus_12503#6 TCATAATTAGTA----TCCACCATTTAGTTAGG----GGAACCTTGAAAATATCCTAATG 207 consensus_12503#1 TCATAATTAGTA----TCCACCATTTAGTTAGG----GGAACCTTGAAAATATCCTAATG 620 consensus_12503#0 AAAGAATTCCTT----CAGG-AATTCTGGTGG--TCCCAAGTCATTCAAGAAAAAAG--T 1056 consensus_12503#4 AAAAAATTCCTT----TGGGGAATTTGGGTGGGCTCCCCAGTCCTTCAAAAAAAAAGGTC 266 consensus_12503#3 AAAGAA--------------GAATTTTGGTGGT--CCCAAGTCATTCAAGAAAAAAG--T 212 consensus_12503#2 AGCTACTTGTTTAGCTTCCAGCATATCCATCAT-GAATGCCTCATTAGCTGCTACAAGAC 289 * ** * * * consensus_12503#5 ATGCAAAAGGTGTAGCTAA---CA-ATACCCTCACCATGGAATATGTCGT-GGCTTTGGG 262 consensus_12503#6 ATGCAAAAGGTGTAGCTAA---CA-ATACCCTCACCATGGAATATGTCGT-GGCTTTGGG 262 consensus_12503#1 ATGCAAAAGGTGTAGCTAA---CA-ATACCCTCACCATGGAATATGTCGT-GGCTTTGGG 675 consensus_12503#0 ACCTGGGAAGGGTAGCTTT---CGTGGAAATAGGCGTTAGAAC-TCCTGT-TATCTTGTT 1111 consensus_12503#4 TCTTGGAAGGGGTACCTTT---CGGGGAATTTGGCCTTAAAACCTCCTGT-TATCTTGTT 322 consensus_12503#3 ACCTGGGAAGGGTAGCTTT---CGTGGAAATAGGCGTTAGAAC-TCCTGT-TATCTTGTT 267 consensus_12503#2 TTTCCAAAGCAGTAACACAAAACATGGGATAGGAAAAAAAAAGGAAACATATAAAGTGCG 349 * *** * * ** * ** consensus_12503#5 C-TGGAAAATGGTTCCACGACAATTATGACTAGCAT----CTAAGGAAGCATG--GGAAA 315 consensus_12503#6 C-TGGAAAATGGTTCCACGACAATTATGACTAGCAT----CTAAGGAAGCATG--GGAAA 315 consensus_12503#1 C-TGGAAAATGGTTCCACGACAATTATGACTAGCAT----CTAAGGAAGCATG--GGAAA 728 consensus_12503#0 CCTTGGAGACAGGTGTCGGAAGGTTGCTGGTAATGC----TTCTGGAACTATC--TGAGA 1165 consensus_12503#4 CCCTGGAAACCAGTGTGGAAAGGTTCCTGGTAATCC----TTCGGGAACTATT--TTAGG 376 consensus_12503#3 CCTTGGAGACAGGTGTCGGAAGGTTCCTGAAATTGACAAGTTTAGGAAAAATCCCTGAGG 327 consensus_12503#2 AATTAAAGACAAATCATGAATTACAGCTGGTAATGCCAGAAGAAGACAGTAATAATGGCC 409 * * * * * * * * consensus_12503#5 TATACTAACTCA---CTGAAGTAGGAGTAGTTG--------TGAAGTTAAGTGCTA-GGC 363 consensus_12503#6 TATACTAACTCA---CTGAAGTNNNAGTAGTTG--------TGAAGTTAAGTGCTN-NNC 363 consensus_12503#1 TATACTAACTCA---CTGAAGTNNNAGTAGTTG--------TGAAGTTAAGTGCTA-GGC 776 consensus_12503#0 CCATTGAAATTGGGTCTTGTCCATACATTTTGG--------TTAAGGTA-GTGCTG-CAT 1215 consensus_12503#4 CCCTTGAATTTGGGTCTGGTCCATCC-TTTTGG--------TTAAGGTA-GTGCTG-CAT 425 consensus_12503#3 GGGCTCAACTGTCG-TTTTTGCATGCTTTCCTGAAGGCGTCTTGTAGCAGCTAATGAGGC 386 consensus_12503#2 ACCTTCACAGCAAAATAAATGCTAGTATGACTG---------CCTGCTA--CGGTGAGAA 458 * * * * * consensus_12503#5 ACAAAAGGCCAAATTTGAA-TAATTAAGTTGCTTG---GTGTTGGGATTGAACC-TATGT 418 consensus_12503#6 ACAAAAGGCCAAATTTNNN-NNATTAAGTTGCTTG---NNGTTNNNNNNNNNNC-TATGN 418 consensus_12503#1 ACAAAAGGCCAAATTTGAA-TAATTAAGTTGCTTG---GTGTTGGGATTGAACC-TATGT 831 consensus_12503#0 GTTTGGAATAGAATTACC--ATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTT 1273 consensus_12503#4 GTTTGGAATAGAATTACCC-ATGTTCTCCTGTCCATACATGTTTGGAACTATCTGTACTT 484 consensus_12503#3 ATTCATGATGGATATGCTGGAAGCTAAACAAGTAGCTCAAGCTCCGACCGCATTTCAAGA 446 consensus_12503#2 CATCATGGCTAACTTAGTTCTTTTTAGATTATTTA--CATATTATCAATACTGATTATTT 516 * * * * * consensus_12503#5 AGAATATCTTTTGACCTTCCATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATG-A 477 consensus_12503#6 NNNN-------------------------------------------------------- 422 consensus_12503#1 AGAATATCTTTTGACCTTC-ATGTGAATTCAACTTTATCTTATTTATTGGGCTCAATG-A 889 consensus_12503#0 ATGTTGCCGTTTTACCATG-TTGACGTTTTACCATGTTGTCATGT---GGACTTTACC-T 1328 consensus_12503#4 ATGTTGCCGTTTTACCCCCCTTGGCGGTTTTTCCCACTTTCCTGT---GGGCCTCTCC-T 540 consensus_12503#3 GCTCGAGTGGCCCAGGAATGTAGACAAACCGTCATACTCCAGCTTGCTGAATTTAATTAT 506 consensus_12503#2 GCTCCAA-GTTTTGATAAAATATATTTTCTAAAAAACATTATTCTACAGTATTGCTTAAA 575 consensus_12503#5 CCACACGTTTATCNNCNNNNNCATGNN-----TGCTNNNN-NTTTTGNGANNNNNNNNN- 530 consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 CCACANGNNNATCTGCATTGACATGTT-----TGCT------------------------ 920 consensus_12503#0 GCTTTTGTGGAG-TTCGTTGCTCC-TA-----TATTGGAT-GCTCAACTCACAACTCTGA 1380 consensus_12503#4 GCCTTTGTGGAGGTCCGTTGCTCCCTA-----TATTGGAT-GCTCAACTCACAACTCTGA 594 consensus_12503#3 TTCATTGTAAAACAGTGTAGTTTCTTGCCCAGTAATGTATCAAGCAGTTAATGACTCGAT 566 consensus_12503#2 TCACTTGTTTTAAGCTATTTGTTAATTTTATTTATCAAAATATTTAATTTATCTCTTTAA 635 consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 GGAT--GCTTACCTTGGACCTGCAATACTTTAATTTTGT--------------------- 1417 consensus_12503#4 GGAT--GCTTATCTTGGACCTGCAAAAAA------------------------------- 621 consensus_12503#3 GTATCAACATAAATGTAATCATTTGTTAATTTTTTTCCTACTTAACAAATATCAGTTGGA 626 consensus_12503#2 TCAAGCAGATAATCTACAGCAACAATCCGCTCAATAATTTGATTCAAACTGAG------- 688 consensus_12503#5 ------------------------------------------------------------ consensus_12503#6 ------------------------------------------------------------ consensus_12503#1 ------------------------------------------------------------ consensus_12503#0 ------------------------------------------------------------ consensus_12503#4 ------------------------------------------------------------ consensus_12503#3 CCTGTACATTATGCTAGTATAAAGAAAAAAAAAGAATATTATTTGTCAAAAAAAAAAAAA 686 consensus_12503#2 ------------------------------------------------------------ consensus_12503#5 - consensus_12503#6 - consensus_12503#1 - consensus_12503#0 - consensus_12503#4 - consensus_12503#3 A 687 consensus_12503#2 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||