cluster # 12506

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Oryza sativa
cluster # 12506 cluster # 12506 Sequences # 10 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12506#0 length = 1148 sequences # 5
consensus_12506#1 length = 779 sequences # 2

consensus_12506#2 length = 734 sequences # 1
consensus_12506#3 length = 519 sequences # 1
consensus_12506#4 length = 320 sequences # 1

consensusID : consensus_12506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1148
fasta sequence

                              [GCGAGACGGTCAAGAAACAAACGGGAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCACCTCTCCTCTCTCTTCTCGCCGTCCTAGCAAGTAGCAACCCTCCTCAGCCAAGAACCACAAGATAACGCAACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGAGAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATGGCCGGAGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCATGAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTGACGACGATGTTCATCCAGATCCAAAAGCTAACTTATCTGAGAAGAGGAAGGCGCTGTTTGAGCCTTTGGAACCAATCAACGGCAAGCGCAGTTCTGCTGAAATGTTGCTCCCACCACCAGACTTTGAGCCCGCGTCATATCCCAAGGGATGGCTGGTTGGCAAGAAACGCAAGCTTGTGAATGTTGATGTGGTGGAGAGCATGAGGAGGATAGCAATCCAAGAAATGAACAGAAAGGACCGTGAGATCAATGG-CCTGAA-TGAACAGTTGGAAGA--A-------C-CCCGAGT-GCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAGCGTAAGAA-GC-GAAC-GGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTATTTTATTTTATGGCTTGTGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGTTTACATGTTAAAAG]

[+] EMBL AK102581             [GCGAGACGGTCAAGAAACAAACGGGAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCACCTCTCCTCTCTCTTCTCGCCGTCCTAGCAAGTAGCAACCCTCCTCAGCCAAGAACCACAAGATAACGCAACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGAGAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATGGCCGGAGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCATGAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTGACGACGATGTTCATCCAGATCCAAAAGCTAACTTATCTGAGAAGAGGAAGGCGCTGTTTGAGCCTTTGGAACCAATCAACGGCAAGCGCAGTTCTGCTGAAATGTTGCTCCCACCACCAGACTTTGAGCCCGCGTCATATCCCAAGGGATGGCTGGTTGGCAAGAAACGCAAGCTTGTGAATGTTGATGTGGTGGAGAGCATGAGGAGGATAGCAATCCAAGAAATGAACAGAAAGGACCGTGAGATCAATGG CCTGAA TGAACAGTTGGAAGA  A       C CCCGAGT GCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAGCGTAAGAA GC GAAC GGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTATTTTATTTTATGGCTTGTGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTG               ]
[+] EMBL OSS1172A             [                                                                                                                                                        GATTGATAGAGAGAGGGACAGAGAGAGAGAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATGGCCGGAGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCATGAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTGACGACGATGTTCATCCAGATCCAAAAGCTAACTTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU182713             [                                                                                                                                                                                                       gggAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATGGCCGGAGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCATGAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTGACGACGATGTTCATCCAGATCCAAAAGCTAACTTATCTGAGAAGAGGAAGGCGCTGTTTGAGCCTTTGGAACCAATCAACGGCAAGCGCAGTTCTGCTGAAATGTTGCTCCCACCACCAGACTTTGAGCCCGCGTCATATCCCAAGGGATGGCTGGTTGGCAAGAAACGCAAGCTTGTGAATGTTGATGTGGTGGAGAGCATGAGGAGGATAGCAATCCAAGAAATGAACAGAAAGGACCGTGAGATCAATGG CCTGAA TGAACAGTTGGAAGAAGA       CTCCCGAGT GCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAGCGTAAGAA GC GAAC GGAGATAGAGA                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU090661             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aAATGGCCCTGAATTGAACAGTTGGAAGA  AGTAACTTC CCCGAGTCGCTTGAGCTTCTNCNAAAGCAGCTCGCAGATGAGCGTAAGAANGCGGAACGGGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTATTTTATTTTATGGCTTGTGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGTTTACATGTTAA   ]
[+] EMBL CB096574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          anggGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGNAATATTATCAAGGTTCCAAGTTCTACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGNGTAAAATTCAATTTATCTTATTNTATTTTATGGCTNGTGTGTNGATGAAGGGGTTCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGNGTATGCGAGATGCTTGTAATGNATTCTATTTAAATGCAAGNGTTTACATGTTATAAG]




>consensus_12506#0
GCGAGACGGTCAAGAAACAAACGGGAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCA
CCTCTCCTCTCTCTTCTCGCCGTCCTAGCAAGTAGCAACCCTCCTCAGCCAAGAACCACA
AGATAACGCAACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGA
GAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGA
AGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCG
GCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATGGCCGG
AGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCAT
GAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTGACGACGATGTTCATCCA
GATCCAAAAGCTAACTTATCTGAGAAGAGGAAGGCGCTGTTTGAGCCTTTGGAACCAATC
AACGGCAAGCGCAGTTCTGCTGAAATGTTGCTCCCACCACCAGACTTTGAGCCCGCGTCA
TATCCCAAGGGATGGCTGGTTGGCAAGAAACGCAAGCTTGTGAATGTTGATGTGGTGGAG
AGCATGAGGAGGATAGCAATCCAAGAAATGAACAGAAAGGACCGTGAGATCAATGGCCTG
AATGAACAGTTGGAAGAACCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAG
CGTAAGAAGCGAACGGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATG
CTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCT
GATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCG
GATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTA
TTTTATTTTATGGCTTGTGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGTTTCT
AGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGTTTACAT
GTTAAAAG

consensusID : consensus_12506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 779
fasta sequence

                              [TCAAGAAACAAACGGGAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCACCTCTCCTCTCTCTTCTCGCCGTCCTAGCAAGTAGCAACCTTCCTCAGCCAAGAACCACAAGATAACGCAACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGGACCGTGAGATCAATGGCCTGAATGAACAGTTGGAAGAAGACTCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAGCGTAAGAAGCGAACGGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTATTTTATTTTATGGCTTGNGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGNTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGNTTACA]

[+] EMBL CB096923             [TCAAGAAACAAACGGGAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCACCTCTCCTCTCTCTTCTCGCCGTCCTAGCAAGTAGCAACCTTCCTCAGCCAAGAACCACAAGATAACGCAACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGGACCGTGAGATCAATGGCCTGAATGAACAGTTGGAAGAAGACTCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAGCGTAAGAAGCGAACGGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTATTTTATTTTATGGCTTGNGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGNTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTC                      ]
[+] EMBL CA767548             [                                 AGGCGACCCGGTGACCCACCTCTCCTCTCTCTTCTCGCCGTCCTAGCAAGTAGCAACCTTCCTCAGCCAAGAACCACAAGACAACGCAACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGGACCGTGAGATCAATGGCCTGAATGAACAGTTGGAAGAAGACTCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAGCGTAAGAAGCGAACGGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATGCTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCGGATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTATTTTATTTTATGGCTTGTGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGNTTACA]




>consensus_12506#1
TCAAGAAACAAACGGGAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCACCTCTCCTC
TCTCTTCTCGCCGTCCTAGCAAGTAGCAACCTTCCTCAGCCAAGAACCACAAGATAACGC
AACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGAGATAGAGCT
CAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAG
TGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGC
GGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGGACCGTGAGATCAATGGCCTGAAT
GAACAGTTGGAAGAAGACTCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGATGAG
CGTAAGAAGCGAACGGAGATAGAGAAGGAAAATTCCATGCTTCATGAGCAGGTATCTATG
CTGATGAACATGCTCGATGAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCT
GATACCTTATAGGCTTAGATTAAGTAATATTATCAAGGTTCCAAGTTCTACACATCTTCG
GATACCAGTTTAAGAGTATTCCCAGATGTCTTTATCTTGTGTAAAATTCAATTTATCTTA
TTTTATTTTATGGCTTGNGTGTAGATGAAGGGGTTCTGTTTGCTGTACCTATTTGNTTCT
AGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGNTTACA

consensusID : consensus_12506#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 734
fasta sequence

                              [AGCCCTTGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGGTGCTTTGTTAATTACATGCTTCATTCAAATGTAAATCATGCTGATTTCGACTCCTGCTTCGTCTTGCTCTGCTCAGATATGAGATATCCATTCCTTCTCTCATAATCTCTTGTTGATTAAATCTCGCTAGCTTCAAATTCAGTCCCTTTCGAAGCTTCTCTGCATTTTCTTTCAGTTTTAAAAAAATTGTATGAACCATACAACACTTTGATTTACGGTTTTACACCTAATTACTGGTAATCTTGGCTACTTACAAGTTAGTATCCTCGAAATTTCCTGCTGCTAAACGTACTGTAGCTGGTAGCGTGGAATAATTTCTGAGTGAGATGTTTCGTGGGGGATTAAATTATTGCCAGCTCACTGAATCGATATATAATTATTATTCCGGACACGTTAATCACGCACCGGTTTGGCTGGTCCATTTGGTGCAAGCTCATGAGGATTAAGACTTAGAGACGCCTTGATAACTAAACTAAGAGGATGTGGCCTGCTTAATTTGCTTGTCTTATACCGCCAAGATTCTGAAACTGCACCTGTCGGTGCTAGGTAGCTTACCAGTGCTAGTGCGAATAT]

[+] EMBL CB617902             [AGCCCTTGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGGTGCTTTGTTAATTACATGCTTCATTCAAATGTAAATCATGCTGATTTCGACTCCTGCTTCGTCTTGCTCTGCTCAGATATGAGATATCCATTCCTTCTCTCATAATCTCTTGTTGATTAAATCTCGCTAGCTTCAAATTCAGTCCCTTTCGAAGCTTCTCTGCATTTTCTTTCAGTTTTAAAAAAATTGTATGAACCATACAACACTTTGATTTACGGTTTTACACCTAATTACTGGTAATCTTGGCTACTTACAAGTTAGTATCCTCGAAATTTCCTGCTGCTAAACGTACTGTAGCTGGTAGCGTGGAATAATTTCTGAGTGAGATGTTTCGTGGGGGATTAAATTATTGCCAGCTCACTGAATCGATATATAATTATTATTCCGGACACGTTAATCACGCACCGGTTTGGCTGGTCCATTTGGTGCAAGCTCATGAGGATTAAGACTTAGAGACGCCTTGATAACTAAACTAAGAGGATGTGGCCTGCTTAATTTGCTTGTCTTATACCGCCAAGATTCTGAAACTGCACCTGTCGGTGCTAGGTAGCTTACCAGTGCTAGTGCGAATAT]




>consensus_12506#2
AGCCCTTGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGA
AGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCC
CCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGGTGCTTTGTTAATTACATGC
TTCATTCAAATGTAAATCATGCTGATTTCGACTCCTGCTTCGTCTTGCTCTGCTCAGATA
TGAGATATCCATTCCTTCTCTCATAATCTCTTGTTGATTAAATCTCGCTAGCTTCAAATT
CAGTCCCTTTCGAAGCTTCTCTGCATTTTCTTTCAGTTTTAAAAAAATTGTATGAACCAT
ACAACACTTTGATTTACGGTTTTACACCTAATTACTGGTAATCTTGGCTACTTACAAGTT
AGTATCCTCGAAATTTCCTGCTGCTAAACGTACTGTAGCTGGTAGCGTGGAATAATTTCT
GAGTGAGATGTTTCGTGGGGGATTAAATTATTGCCAGCTCACTGAATCGATATATAATTA
TTATTCCGGACACGTTAATCACGCACCGGTTTGGCTGGTCCATTTGGTGCAAGCTCATGA
GGATTAAGACTTAGAGACGCCTTGATAACTAAACTAAGAGGATGTGGCCTGCTTAATTTG
CTTGTCTTATACCGCCAAGATTCTGAAACTGCACCTGTCGGTGCTAGGTAGCTTACCAGT
GCTAGTGCGAATAT

consensusID : consensus_12506#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [GTTGTGTTCATGCCCGTTCAGGACCCGTGGAGGATCAATGGCCTGNNAGGTGNCCAGGTTGGGAGTANAGTTNCTCGTAAGTGCCTTGAGCTTCTTACCAATATAGCTAGCTCGCAGATGAGCGCTAAGAATCGATNNCGGTAGTATATAGAAGGTAAAGTTCCATGCTTCATGAGCAGGTATCTATGCTGATGTAACATGCNTCGTATGTAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCANAGGTTCCAAGTTCNACACATGCTTCGGGATGACCAGTGTTAAGAGTATTGCCCAGATCGTCTTTATCTTGTGGTAAAATTCAATGTTATCTTGATTTTGATTTGTATGGCTTGTGTGTAGATGAAGGGGTTGCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGTTTACATCTTAAAAAAAAAAA]

[+] EMBL BI807319             [GTTGTGTTCATGCCCGTTCAGGACCCGTGGAGGATCAATGGCCTGNNAGGTGNCCAGGTTGGGAGTANAGTTNCTCGTAAGTGCCTTGAGCTTCTTACCAATATAGCTAGCTCGCAGATGAGCGCTAAGAATCGATNNCGGTAGTATATAGAAGGTAAAGTTCCATGCTTCATGAGCAGGTATCTATGCTGATGTAACATGCNTCGTATGTAAAATGAAGCCTTTGATGAGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCANAGGTTCCAAGTTCNACACATGCTTCGGGATGACCAGTGTTAAGAGTATTGCCCAGATCGTCTTTATCTTGTGGTAAAATTCAATGTTATCTTGATTTTGATTTGTATGGCTTGTGTGTAGATGAAGGGGTTGCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTATTCTATTTAAATGCAAGTGTTTACATCTTAAAAAAAAAAA]




>consensus_12506#3
GTTGTGTTCATGCCCGTTCAGGACCCGTGGAGGATCAATGGCCTGNNAGGTGNCCAGGTT
GGGAGTANAGTTNCTCGTAAGTGCCTTGAGCTTCTTACCAATATAGCTAGCTCGCAGATG
AGCGCTAAGAATCGATNNCGGTAGTATATAGAAGGTAAAGTTCCATGCTTCATGAGCAGG
TATCTATGCTGATGTAACATGCNTCGTATGTAAAATGAAGCCTTTGATGAGGAGGGAGAA
GCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCANAGGTTCCAAGTT
CNACACATGCTTCGGGATGACCAGTGTTAAGAGTATTGCCCAGATCGTCTTTATCTTGTG
GTAAAATTCAATGTTATCTTGATTTTGATTTGTATGGCTTGTGTGTAGATGAAGGGGTTG
CTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATGCTTGTAATGTAT
TCTATTTAAATGCAAGTGTTTACATCTTAAAAAAAAAAA

consensusID : consensus_12506#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [GGAACGCGTGGGNAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATNGCCGGAGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCATGAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTNACGACGATGTTCATCCAGATCCAAAAGCTAACTTATCTTAGGAAGA]

[+] EMBL C73935               [GGAACGCGTGGGNAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATNGCCGGAGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCATGAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTNACGACGATGTTCATCCAGATCCAAAAGCTAACTTATCTTAGGAAGA]




>consensus_12506#4
GGAACGCGTGGGNAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGA
AGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCC
CCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATNGCCGGAGCTTGCAA
CAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCATGAAGAGGCC
ATGAAAATAGATGATGCAAATGCAGTAAGTACTNACGACGATGTTCATCCAGATCCAAAA
GCTAACTTATCTTAGGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12506#1      ------------------------------------------------------------
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      GCGAGACGGTCAAGAAACAAACGGGAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCA 60
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      ------------------------------------------------------------
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      CCTCTCCTCTCTCTTCTCGCCGTCCTAGCAAGTAGCAACCCTCCTCAGCCAAGAACCACA 120
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      ------------------------------------------------------------
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      AGATAACGCAACTCACAAGGCACGCACCCATAGATTGATAGAGAGAGGGACAGAGAGAGA 180
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      ------------------------------------------------------------
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      GAGAGATAGAGCTCAGGTTGCAAGCAGATAGAACGGGTCCAGGTAGCTTCGCAATCAAGA 240
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      ------------------------------------------------------------
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      AGAAGAAGAAGAGTGAAGGAGGAGGAGGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCG 300
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      ---------------------------------------------TCAAGAAACAAACGG 15
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      GCTGATCCCCCGCGGATTTTCTGGAAGTCGAGGAGGAGATCAGCCTCAGCCAATGGCCGG 360
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      GAGTTGCTTCCAAGGCGAAGGCGACCCGGTGACCCACCTCTCCTCTCTCTTCTCGCCGTC 75
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      AGCTTGCAACAAGAACTTAACAAAGAGGCTGCTGATGAACAACTGAACAATCAGGCTCAT 420
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      CTAGCAAGTAGCAACCTTCCTCAGCCAAGAACCACAAGATAACGCAACTCACAAGGCACG 135
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      GAAGAGGCCATGAAAATAGATGATGCAAATGCAGTAAGTACTGACGACGATGTTCATCCA 480
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ------------------------------------------------------------
                                                                                   

consensus_12506#1      CACCCATAGATTGATAGAGAGAGGGACAGAGAGAGA--GATAGAGCTCAGGTTGCAAGCA 193
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      GATCCAAAAGCTAACTTATCTGAGAAGAGGAAGGCGCTGTTTGAGCCTTTGGAACCAATC 540
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      -------------------------------------------AGCCCTTGTTGCAAGCA 17
                                                                                   

consensus_12506#1      GATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGA 253
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      AACGGCAAGCGCAGTTCTGCTGAAATGTTGCTCCCACCACCAGACTTTGAGCCCGCGTCA 600
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      GATAGAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTGAAGGAGGAGGA 77
                                                                                   

consensus_12506#1      GGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCT--GG 311
consensus_12506#3      ----------------------------------GTTGTGTTCATGCCCGTTC-----AG 21
consensus_12506#0      TATCCCAAGGGATGGCTGGTTGGCAAGAAACGCAAGCTTGTGAATGTTGATGTGGTGGAG 660
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      GGAGCAAGAGCAAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGCGGATTTTCT--GG 135
                                                                                   

consensus_12506#1      AAGTCGAGGAGGAGATCAGCCTCA--------------GGACCGTGAGATCAATGGCCTG 357
consensus_12506#3      GACCCGTGGAGGA--TCAAT------------------GGCCTGNNAGGTGNCCAGGTTG 61
consensus_12506#0      AGCATGAGGAGGATAGCAATCCAAGAAATGAACAGAAAGGACCGTGAGATCAATGGCCTG 720
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      AAGTCGAGGAGGAGATCAGCCTCAGGTGCTTTGTTAATTACATGCTTCATTCAAATGTAA 195
                                                                                   

consensus_12506#1      AATGAACAGTTGGAAG-AAGACTCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGA 416
consensus_12506#3      GGAGTANAGTTNCTCGTAAGTGCCTTGAGCTTCTTA---CCAATATAGCTAGCTCGCAGA 118
consensus_12506#0      AATGAACAGTTGG----AAGAACCCCGAGTGCTTGAGCTTCTACAAAAGCAGCTCGCAGA 776
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      ATCATGCTGATTTCGACTCCTGCTTCGTCTTGCTCTGCTCAGATATGAGATATCCATTCC 255
                                                                                   

consensus_12506#1      TGAGCG-TAAGAAGCGAACGGAG----ATAGAGAAGG---AAAATTCCATGCTTCATGAG 468
consensus_12506#3      TGAGCGCTAAGAATCGATNNCGGTAGTATATAGAAGGT--AAAGTTCCATGCTTCATGAG 176
consensus_12506#0      TGAGCG-TAAGAAGCGAACGGAG----ATAGAGAAGG---AAAATTCCATGCTTCATGAG 828
consensus_12506#4      ---------------------------------------------GGAACGCGTGGGNAG 15
consensus_12506#2      TTCTCT-CATAATCTCTTGTTGATTAAATCTCGCTAGCTTCAAATTCAGTCCCTTTCGAA 314
                                                                          * *    * 

consensus_12506#1      ------CAGGTATCTATGCTGATG-AACATGCTCGATG---AAAATGAAGCCTTTGA-TG 517
consensus_12506#3      ------CAGGTATCTATGCTGATGTAACATGCNTCGTATGTAAAATGAAGCCTTTGA-TG 229
consensus_12506#0      ------CAGGTATCTATGCTGATG-AACATGCTCGATG---AAAATGAAGCCTTTGA-TG 877
consensus_12506#4      ------CAGATA---GAACGGGTCCAGGTAGCTTCGCAATCAAGAAGAAGAAGAAGAGTG 66
consensus_12506#2      GCTTCTCTGCATTTTCTTTCAGTTTTAAAAAAATTGTATGAACCATACAACACTTTGATT 374
                             * *             *                  *  *   *         * 

consensus_12506#1      AGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAA- 576
consensus_12506#3      AGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCANA 289
consensus_12506#0      AGGAGGGAGAAGCACCACCACCTGATACCTTATAGGCTTAGATTAAGTAATATTATCAA- 936
consensus_12506#4      AAGGAGGAGGAGGAGCAAGAGC--AAGCCATGGAGGAGCCGGCCTCGGCTGATCCCCCGC 124
consensus_12506#2      TACGGTTTTACACCTAATTACTGGTAATCTTGGCTACTTACA--AGTTAGTATCCTCGAA 432
                                       *  *        * *                    **   *   

consensus_12506#1      GGTTCCAAGTTCTACACAT-CTTCGGAT--ACCAGT-TTAAGAGTATT-CCCAGAT-GTC 630
consensus_12506#3      GGTTCCAAGTTCNACACATGCTTCGGGATGACCAGTGTTAAGAGTATTGCCCAGATCGTC 349
consensus_12506#0      GGTTCCAAGTTCTACACAT-CTTCGGAT--ACCAGT-TTAAGAGTATT-CCCAGAT-GTC 990
consensus_12506#4      GGATT----TTCTGGAAGT-CGAGGAGGAGATCAGC-CTCAGCCAATNGCCGGAG----- 173
consensus_12506#2      ATTTCCTGCTGCTAAACGTACTGTAGCT--GGTAGC-GTGGAATAATTTCTGAGTGAGAT 489
                          *     * *   *  * *            **   *      **  *          

consensus_12506#1      TTTATCTTGTG-TAAAATTCAAT-TTATCTT-ATTTTA--TTTTATGGCTTGNGTGTAGA 685
consensus_12506#3      TTTATCTTGTGGTAAAATTCAATGTTATCTTGATTTTGATTTGTATGGCTTGTGTGTAGA 409
consensus_12506#0      TTTATCTTGTG-TAAAATTCAAT-TTATCTT-ATTTTA--TTTTATGGCTTGTGTGTAGA 1045
consensus_12506#4      -----CTTGCAACAAGAA----------CTTAACAAAG----AGGCTGCTGATGAACAAC 214
consensus_12506#2      GTTTCGTGGGGGATTAAATTATTGCCAGCTCACTGAATCGATATATAATTATTATTCCG- 548
                             * *       *           **                   *          

consensus_12506#1      TGAAGGGGTT-CTGTTTGCTGTACCTATTTGNTTCTAGGCTGCAAGTGTATGCGAGATG- 743
consensus_12506#3      TGAAGGGGTTGCTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATG- 468
consensus_12506#0      TGAAGGGGTT-CTGTTTGCTGTACCTATTTGTTTCTAGGCTGCAAGTGTATGCGAGATG- 1103
consensus_12506#4      TGAACAATCAGGCTCATGAAGAGGCCATGAAAATAGATGATGCAAATGCA-GTAAG-TA- 271
consensus_12506#2      -GACACGTTAATCACGCACCGGTTTGGCTGGTCCATTTGGTGCAAGCTCATGAGGATTAA 607
                        **                 *                 * *****    * *     *  

consensus_12506#1      ---CTTGTAATGTATTC-TATTTAAATGCAAGTGNTTACA-------------------- 779
consensus_12506#3      ---CTTGTAATGTATTC-TATTTAAATGCAAGTGTTTACATCTTAAAAAAAAAAA----- 519
consensus_12506#0      ---CTTGTAATGTATTC-TATTTAAATGCAAGTGTTTACATGTTAAAAG----------- 1148
consensus_12506#4      ---CTNACGACGATGTT-CATCCAGATCCAAAAGCTAACTTATCTTAGGAAGA------- 320
consensus_12506#2      GACTTAGAGACGCCTTGATAACTAAAC-TAAGAGGATGTGGCCTGCTTAATTTGCTTGTC 666
                           *    * *   *   *   * *   **  *                          

consensus_12506#1      ------------------------------------------------------------
consensus_12506#3      ------------------------------------------------------------
consensus_12506#0      ------------------------------------------------------------
consensus_12506#4      ------------------------------------------------------------
consensus_12506#2      TTATACCGCCAAGATTCTGAAACTGCACCTGTCGGTGCTAGGTAGCTTACCAGTGCTAGT 726
                                                                                   

consensus_12506#1      --------
consensus_12506#3      --------
consensus_12506#0      --------
consensus_12506#4      --------
consensus_12506#2      GCGAATAT 734