These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1510 fasta sequence [GCGCGGCGCGCGCCCCGGCGCCGCCGCCGCGGCGGCGGCGGCGGCGGCGGACGCCGTGGCCGCCTCGGTCGCGTCGGGCGGGAAGAAGGGGAAGGCCGCCGTCGTGCTGCGGGTCCCCGCCGGGTCGCCGATCGTCGCCGCGAGGCGCCAGGCGTCGGCCCGCCGGGAGATCGCCGCGCGGCGGGCGCGCGAGGCCGGCCGCGAGTACGAGCTCATCCCCACCCACCGCGGCGAGACGCTGTTCACGCAGTGCTGGTGGCCTCACGGATCCTCCTCCGCCATTAAGCCGAGGGCGCTCGTCGTAGTCATGCACGGGTTGAACGAGCACAGTGGGAGATACGATCATCTAGCTAGGAGGTTGAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGGTCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAAGAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGGAGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGACAAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA-GGATGAGCATCCCGGCCTCCCGATGGTGATGACGCGGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTTGCTGTAGTACCA-GGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG-CA-GGGATACGCCTATGTAAGATTGTTCGTTTCG-CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC-AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAAAA] [+] EMBL AK120822 [GCGCGGCGCGCGCCCCGGCGCCGCCGCCGCGGCGGCGGCGGCGGCGGCGGACGCCGTGGCCGCCTCGGTCGCGTCGGGCGGGAAGAAGGGGAAGGCCGCCGTCGTGCTGCGGGTCCCCGCCGGGTCGCCGATCGTCGCCGCGAGGCGCCAGGCGTCGGCCCGCCGGGAGATCGCCGCGCGGCGGGCGCGCGAGGCCGGCCGCGAGTACGAGCTCATCCCCACCCACCGCGGCGAGACGCTGTTCACGCAGTGCTGGTGGCCTCACGGATCCTCCTCCGCCATTAAGCCGAGGGCGCTCGTCGTAGTCATGCACGGGTTGAACGAGCACAGTGGGAGATACGATCATCTAGCTAGGAGGTTGAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGGTCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAAGAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGGAGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGACAAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA GGATGAGCATCCCGGCCTCCCAATGGTGATGACGCGGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTTGCTGTAGTACCA GGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTG ] [+] EMBL CA767079 [ TCATCTAGCTAGGAGGTTGAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGGTCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAAGAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGGAGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCACCCTCGGACAAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATNCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA GGATGAGCATNCCGGCCTNCCGATGGNGATGACGCGGTCTTTGATCATCTGCAAANCCNAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGC ] [+] EMBL AA752952 [ CATCNTTTNGAANGCTATGCTTGATCCANAAGTANATTCTTGTGTTGAGGGCATCTTCCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCCTGTGTTTGCCCTCATANCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACCGGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGGTTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCACTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGATCCCCNAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGA AAGTCCCTCAATCTGTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAAGATTTGACAGCTGATATCCATTCATANGACGCAGTCTGATCGTCCGCGGAACGCGGGGGCA GGATGANCATCCCGGGCTCCCGATGGTGATGAC CCGTCTTTGATC TCTG ] [+] EMBL BI799861 [ CAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAACATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTCTGATCGTCCGCGGAGCGCGGGGGCA GGATGAGCATCCCGGCCTCCCGATGGTGATGACGCGGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTTGCTGTAGTACCA GGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACACTCCGATGAGAGGAGACGTTTTCTGCGTTGC ATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAAAA] [+] EMBL BM420387 [ GGAGC CCGGGGCACGGATGAGCATCCC GCCTCCCGATGGTGATGACNCGGTCTTTGATCATCTGCAGA CCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCCCGAGCCTTGCTTCTATCTATATTACGTGTTGCTGTAGTACCACGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTGCCACGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCCTGTGTGNCTGCATGTGTGGTGTCCCATAATTTAGATNCCTTTTACACTCCGATGAGAGGAGACGTTTTCTGCGTTCCNATGTAATCAGATTTTCCNCCCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAA ] [+] EMBL C98730 [ TGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCNATGTAATCAGATTTTGC AGCNGAATATATTTGCNTGGATTGTCTGATGTGTAAAAAA ] [+] EMBL AU161355 [ TTGTTTG CA GGGATACGCCTATGTAAGATTGTNCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAA ] [+] EMBL AU093645 [ TTGTTTG CA GGGATACGCCTATGTAAGATTGTTCGTTTCG CCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGC AGCAGAATATATTTGCCTGGATTGTCTGATGTGTAAAAAAAA ] consensusID : consensus_12507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 332 fasta sequence [GTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTAT-ATTACGTGTTGCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTAAAAAAAAAAAAAAAAAAA] [+] EMBL AU163363 [GTTGCTGCAAGCCTGCGATGCTGCTGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTAT ATTACGTGTTGCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGGAATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTAAAAAAAAAAAAAAAAAAA] [-] EMBL C74529 [ TGCTGCTNGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATAATTACGTGTTGCTGTAGTACCAGCCGATGATGGGTCGGCTAACAACTGTCGCCTCCCNTTGGTATCCCGGAATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCTGCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTCTGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12507#0 GCGCGGCGCGCGCCCCGGCGCCGCCGCCGCGGCGGCGGCGGCGGCGGCGGACGCCGTGGC 60 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 CGCCTCGGTCGCGTCGGGCGGGAAGAAGGGGAAGGCCGCCGTCGTGCTGCGGGTCCCCGC 120 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 CGGGTCGCCGATCGTCGCCGCGAGGCGCCAGGCGTCGGCCCGCCGGGAGATCGCCGCGCG 180 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 GCGGGCGCGCGAGGCCGGCCGCGAGTACGAGCTCATCCCCACCCACCGCGGCGAGACGCT 240 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 GTTCACGCAGTGCTGGTGGCCTCACGGATCCTCCTCCGCCATTAAGCCGAGGGCGCTCGT 300 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 CGTAGTCATGCACGGGTTGAACGAGCACAGTGGGAGATACGATCATCTAGCTAGGAGGTT 360 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 GAACGACATCGGTGTTAAGGTTTATGGGATGGACTGGACTGGTCATGGTGGAAGTGATGG 420 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 TCTTCATGGTTACGTGCAATCTCTTGACCATGCTGTCAGTGACTTGAAAATGTATCTCAA 480 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 GAAAATTTTAGCTGAAAACCCTGGTCTTCCATGCTTCTGTTTTGGCCACTCAACTGGTGG 540 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 AGGCATCATTTTGAAGGCTATGCTTGATCCAGAGGTAGATTCTTGTGTTGAGGGCATCTT 600 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 CCTGACATCACCAGCTGTTCGTGTTCAGCCTGCCCATCCAATCATAAAGGTCATGGCCCC 660 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 TGTGTTTGCCCTCATAGCCCCAAGATACCAGTTCACGGCTTCACACAGGAACGGGCCACC 720 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 GGTATCACGTGACCCGGAAGCCCTGAAGGCTAAATATTCAGACCAGCTTGTGTTCACCGG 780 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 TTCCATCCGAGTTAGAACAGGGTACGAGATCCTACGCCTGACGTCGTATTTGCAACAGCA 840 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 CTTGCACAGAATCACTGTCCCGATGCTGGTGATGCATGGTGCCGATGATATGGTGACCGA 900 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 TCCCCAAGGATCACAGAAACTGTACGAAGAAGCTTCATCCTCGGACAAGTCCCTCAATCT 960 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 GTACAACGGTCTGCTTCATGATCTGCTCATCGAGCCCGAGAAGGAGAAGATCATGGACAA 1020 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 CATTGTGGATTGGCTGAGCCCGAGGATTTGACAGCTGATATCCATTCATAGGACGCAGTC 1080 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 TGATCGTCCGCGGAGCGCGGGGGCAGGATGAGCATCCCGGCCTCCCGATGGTGATGACGC 1140 consensus_12507#1 ------------------------------------------------------------ consensus_12507#0 GGTCTTTGATCATCTGCAGAGCCGAGGAGGGCGAGCGTTGCTGCAAGCCTGCGATGCTGC 1200 consensus_12507#1 ------------------------------------GTTGCTGCAAGCCTGCGATGCTGC 24 ************************ consensus_12507#0 TGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTT 1260 consensus_12507#1 TGGCCTCCCGGCGTTGGTAACATCATACCACGAGCATTGCTTCTATCTATATTACGTGTT 84 ************************************************************ consensus_12507#0 GCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGG 1320 consensus_12507#1 GCTGTAGTACCAGGCGATGATGGGTCGGCTTACTACTGTCGCCTCCCCTTGGTATCCCGG 144 ************************************************************ consensus_12507#0 AATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCT 1380 consensus_12507#1 AATCCTTTTTGTTTGCAGGGATACGCCTATGTAAGATTGTTCGTTTCGCCCTGTGTGGCT 204 ************************************************************ consensus_12507#0 GCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTC 1440 consensus_12507#1 GCATGTGTGGTGTCCAATAATTTAGATGCCTTTTACCCTCCGATGAGAGGAGACGTTTTC 264 ************************************************************ consensus_12507#0 TGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTGTCTGATGTGT 1500 consensus_12507#1 TGCGTTGCAATGTAATCAGATTTTGCAGCAGAATATATTTGCCTGGATTAAAAAAAAAAA 324 ************************************************* * consensus_12507#0 AAAAAAAAAA 1510 consensus_12507#1 AAAAAAAA-- 332 ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||