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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1474 fasta sequence
[CTGGCCATTAGAGCTAGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAACGGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGCTCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGTTGTGTATGCAAGGCGGTGATCACGGAGGCATGGAGATGGGCGTGGGGTCGTTCACCGGCGGCGGAGGAGGCGGGGAGTGCTCGTCGTCGTCGGCGACGGCGGCGGCTGCTGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAACAAACCGTTATCCAAGTATTTTATCCACAGTAATACAATGTTGATGTTTCAGTAATTAACAACTGAATTATAACACAAACTTCTTTTTTCTATATGTAATACAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAAAAAAAAAAAAAAAAA]
[+] EMBL AB061819 [CTGGCCATTAGAGCTAGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAACGGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGCTCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGTTGTGTATGCAAGGCGGTGATCACGGAGGCATGGAGATGGGCGTGGGGTCGTTCACCGGCGGCGGAGGAGGCGGGGAGTGCTCGTCGTCGTCGGCGACGGCGGCGGCTGCTGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAACAAACCGTTATCCAAGTATTTTATCCACAGTAATACAATGTTGATGTTTCAGTAATTAACAACTGAATTATAACACAAACTTCTTTTTTCTATATGTAATACAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAAAAAAAAAAAAAAAAA]
consensusID : consensus_12508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence
[TAGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAACGGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGCTCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGTTGTGTATGCAAGGCGGTGATCACGGAGGCATGGAGATGGGCGTGGGGTCGTTCACCGGCGGCGGAGGAGGCGGGGAGTGCTCGTCGTCGTCGGCGACGGCGGCGGCTGCTGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGAACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAAAAAAAAAAAAAGAA]
[+] EMBL AK120888 [TAGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAACGGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGCTCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGTTGTGTATGCAAGGCGGTGATCACGGAGGCATGGAGATGGGCGTGGGGTCGTTCACCGGCGGCGGAGGAGGCGGGGAGTGCTCGTCGTCGTCGGCGACGGCGGCGGCTGCTGCGGCGGCTGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGAACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTATATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTT ]
[-] EMBL CB659414 [ GCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCCCCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCCCGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAAAAAAAAAAAAAGAA]
[+] EMBL AU174012 [ CAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAAAAAA ]
[+] EMBL OSS13204A [ CAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAAAAAA ]
consensusID : consensus_12508#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1343 fasta sequence
[AGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAACGGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGCTCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGTTGTGTATGCAAGGCGGTGATCACGGAGGCATGGAGATGGGCGTGGGGTCGTTCACCGGCGGCGGAGGAGGCTGCTGCGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAATTTTGTTGTCGTGGGTGTACCTGCATGCATACATAACCCCAAGACTAA-TTCATTTGCTGTGCATATACATTGA]
[+] EMBL AK060316 [AGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAACGGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGCTCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGTTGTGTATGCAAGGCGGTGATCACGGAGGCATGGAGATGGGCGTGGGGTCGTTCACCGGCGGCGGAGGAGGCTGCTGCGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAGATCGCGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAATTTTGTTGTCGTGGGTGTACCTGCATGCATACATAACCCCAAGACTAA TTCATTTGCTGTGCATATACATTG ]
[+] EMBL CB659413 [ GGGCTATCGCGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAAT ]
[-] EMBL CB653005 [ CATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGGGATGCTCAAGCAAATTCTTCTTGTTGGTATAGTT ]
[+] EMBL OSS15810A [ CAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGGTATAGTTTTTAATTTTGTTGTCGTGGGTGTACCTGCATGCATACATAACCCCAAGNCTAATTTCATTTGCTGTGCATATACATTGA]
consensusID : consensus_12508#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1142 fasta sequence
[GTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGTACGCATCTATTTAATTTCTTCCTGAGTTCGATGCGCCATGCTTGATTAATTTCACTAGGTTGAATTTAATCTTTGCATTTGTGCATGCATGCATACATTACATGCAAGTATCATACCGTACGCACTAGCTACATGATTAACTAGAAGCTATCCAGCCAAGCTAACTGTATATATGCATACTGAAATGATCGATGCAGGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGG]
[+] EMBL AB007629 [GTGGGCTGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACGACAAGCAGGAGCTCGACTCCTTCCTCGTACGCATCTATTTAATTTCTTCCTGAGTTCGATGCGCCATGCTTGATTAATTTCACTAGGTTGAATTTAATCTTTGCATTTGTGCATGCATGCATACATTACATGCAAGTATCATACCGTACGCACTAGCTACATGATTAACTAGAAGCTATCCAGCCAAGCTAACTGTATATATGCATACTGAAATGATCGATGCAGGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCACGTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAGGACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGATGAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATGGGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAAGAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAAATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAATGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTTGAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGTAACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAAGGGCAGAAAAAAATGTATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGATCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACATACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATTCTTCTTGTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12508#0 CTGGCCATTAGAGCTAGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAAC 60
consensus_12508#1 --------------TAGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAAC 46
consensus_12508#2 ---------------AGCTAGCGAGAGCTCTAGCTACAGCTATACATACGTGTACCCAAC 45
consensus_12508#3 ------------------------------------------------------------
consensus_12508#0 GGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGC 120
consensus_12508#1 GGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGC 106
consensus_12508#2 GGCCACGGTCACCCGCGCGAGCGAGCACGCGCACCAACCGATCGAGCCCAACAAGCTCGC 105
consensus_12508#3 ------------------------------------------------------------
consensus_12508#0 TCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGT 180
consensus_12508#1 TCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGT 166
consensus_12508#2 TCGCTCTTGGTGCGCGCGCGCGCGGCGAGTTCGATCGATCGGTGTATACGCGTATCGTGT 165
consensus_12508#3 ------------------------------------------------------GTGGGC 6
* *
consensus_12508#0 TGTGTATGCAAGGCGGTGATCACGGAG-GCATGGAGATGGGCGTGGGGTCGTTCACCGGC 239
consensus_12508#1 TGTGTATGCAAGGCGGTGATCACGGAG-GCATGGAGATGGGCGTGGGGTCGTTCACCGGC 225
consensus_12508#2 TGTGTATGCAAGGCGGTGATCACGGAG-GCATGGAGATGGGCGTGGGGTCGTTCACCGGC 224
consensus_12508#3 TGCCTGCGCGTGGCGACGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGC--GC 64
** * ** **** * ** ** * * * ** ** * * * ** * **
consensus_12508#0 GGCGGAGGAGGCGGGGAGTGCTCGTCGTCGTCGGCGACGGCGGCGGCTGCTGCGGCGGCT 299
consensus_12508#1 GGCGGAGGAGGCGGGGAGTGCTCGTCGTCGTCGGCGACGGCGGCGGCTGCTGCGGCGGCT 285
consensus_12508#2 GGCGGAGGAGGC-----------------------------------TGCTGC------- 242
consensus_12508#3 AGTCCAGCGGCC------------TCCTCCACTCCTACGCCGCGCACCACCGCCCCTTCC 112
* ** * * * **
consensus_12508#0 GCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAG--ATCG 357
consensus_12508#1 GCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGAGCGGCAGCTGCTCAAGGGGGAG--ATCG 343
consensus_12508#2 -----------------------GGCGGAGGAGCGGCAGCTGCTCAAGGGGGAG--ATCG 277
consensus_12508#3 TCTCCCCCCACGAC--------AAGCAGGAGCTCGACTCCTTCCTCGTACGCATCTATTT 164
** * * ** * ** * * * **
consensus_12508#0 CGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGA 417
consensus_12508#1 CGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGA 403
consensus_12508#2 CGGTGCACCCGCTGTGCGAGCAGCTGGTGGCGGCGCACGTGGGCTGCCTGCGCGTGGCGA 337
consensus_12508#3 AATTTCTTCCTGAGTTCGATGCGCCATGCTTGATTAATTTCACTAGGTTGAATTTAATCT 224
* * ** ** *** ** * * * * ** *
consensus_12508#0 CGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCC 477
consensus_12508#1 CGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCC 463
consensus_12508#2 CGCCCATCGACCACCTCCCGCTGATCGACGCGCAGCTCGCGCAGTCCAGCGGCCTCCTCC 397
consensus_12508#3 TTGCATTTGTGCATGCATGCATACATTACATGCAAGTATCATACCGTACGCACTAGCTAC 284
* * * ** * ** *** * * * * * ** *
consensus_12508#0 ACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACG-ACAAGCAGGAGCTCGAC 536
consensus_12508#1 ACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACG-ACAAGCAGGAGCTCGAC 522
consensus_12508#2 ACTCCTACGCCGCGCACCACCGCCCCTTCCTCTCCCCCCACG-ACAAGCAGGAGCTCGAC 456
consensus_12508#3 ATGATTA-ACTAGAAGCTATCCAGCCAAGCTAACTGTATATATGCATACTGAAAT---GA 340
* ** * * * * ** ** * * ** * * *
consensus_12508#0 TCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCAC 596
consensus_12508#1 TCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCAC 582
consensus_12508#2 TCCTTCCTCGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCAC 516
consensus_12508#3 TCGATGCAGGCGCAGTACATGATGCTGCTGTGCTCGTTCAGGGAGCAGCTGCAGCAGCAC 400
** * * ***************************************************
consensus_12508#0 GTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAG 656
consensus_12508#1 GTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAG 642
consensus_12508#2 GTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAG 576
consensus_12508#3 GTCCGGGTGCACGCCGTGGAGGCCGTCATGGCGTGCCGCGAGATCGAGCAATCCTTGCAG 460
************************************************************
consensus_12508#0 GACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGAT 716
consensus_12508#1 GACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGAT 702
consensus_12508#2 GACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGAT 636
consensus_12508#3 GACCTAACCGGTGCAACTTTGGAGGAAGGGACAGGGGCGACCATGTCGGAGGACGAGGAT 520
************************************************************
consensus_12508#0 GAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATG 776
consensus_12508#1 GAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGAACGGGCACGACCTCATG 762
consensus_12508#2 GAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATG 696
consensus_12508#3 GAGACGGCGCCGATGCTGGAGGGCCCGATGGATATGGGCTCGGACGGGCACGACCTCATG 580
****************************************** *****************
consensus_12508#0 GGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAA 836
consensus_12508#1 GGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAA 822
consensus_12508#2 GGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAA 756
consensus_12508#3 GGCTTCGGCCCGCTCATGCCCACCGACTCCGAGCGATCCCTCATGGAGCGGGTCAGGCAA 640
************************************************************
consensus_12508#0 GAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAA 896
consensus_12508#1 GAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAA 882
consensus_12508#2 GAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAA 816
consensus_12508#3 GAGCTCAAGATTGAGCTCAAGCAGGGCTTCAAGTCAAGGATTGAGGATGTGAGAGAAGAA 700
************************************************************
consensus_12508#0 ATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAA 956
consensus_12508#1 ATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAA 942
consensus_12508#2 ATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAA 876
consensus_12508#3 ATATTGAGGAAGAGGAGGGCAGGAAAGTTGCCTGGGGACACCACCACCATACTCAAGCAA 760
************************************************************
consensus_12508#0 TGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTT 1016
consensus_12508#1 TGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTT 1002
consensus_12508#2 TGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTT 936
consensus_12508#3 TGGTGGCAGCAACACTCCAAGTGGCCATACCCCACGGAGGATGATAAGGCAAAGCTTGTT 820
************************************************************
consensus_12508#0 GAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGT 1076
consensus_12508#1 GAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGT 1062
consensus_12508#2 GAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGT 996
consensus_12508#3 GAAGAGACTGGCCTGCAGCTCAAGCAAATCAACAACTGGTTCATCAATCAGAGAAAGCGT 880
************************************************************
consensus_12508#0 AACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAACAAAC 1136
consensus_12508#1 AACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAA----- 1117
consensus_12508#2 AACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAA----- 1051
consensus_12508#3 AACTGGCACAACAACTCACAGACATCAACCCTTAAATCAAAGCGTAAAAGGTAAA----- 935
*******************************************************
consensus_12508#0 CGTTATCCAAGTATTTTATCCACAGTAATACAATGTTGATGTTTCAGTAATTAACAACTG 1196
consensus_12508#1 ------------------------------------------------------------
consensus_12508#2 ------------------------------------------------------------
consensus_12508#3 ------------------------------------------------------------
consensus_12508#0 AATTATAACACAAACTTCTTTTTTCTATATGTAATACAGGTAAAGGGCAGAAAAAAATGT 1256
consensus_12508#1 --------------------------------------------GGGCAGAAAAAAATGT 1133
consensus_12508#2 --------------------------------------------GGGCAGAAAAAAATGT 1067
consensus_12508#3 --------------------------------------------GGGCAGAAAAAAATGT 951
****************
consensus_12508#0 ATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGA 1316
consensus_12508#1 ATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGA 1193
consensus_12508#2 ATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGA 1127
consensus_12508#3 ATACCTGACGTACTCGCTAATCAAATCAAAAGAAGACATGGTGACTCATAAGTAATAAGA 1011
************************************************************
consensus_12508#0 TCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACA 1376
consensus_12508#1 TCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACA 1253
consensus_12508#2 TCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACA 1187
consensus_12508#3 TCATCTTAAATTGTATATCTAGTTATTAATTAGTCAGAGGTGACAAATTCATGACATACA 1071
************************************************************
consensus_12508#0 TACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATT 1436
consensus_12508#1 TACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATT 1313
consensus_12508#2 TACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATT 1247
consensus_12508#3 TACTAGTCTGACCACTGGCATATGCGTTGTAATTTTTGAGCAGATATGCTCAAGCAAATT 1131
************************************************************
consensus_12508#0 CTTCTTGTTGGTATAGTTTTTAAAAAAAAAAAAAAAAA---------------------- 1474
consensus_12508#1 CTTCTTGTTGGTATAGTTTTTAAAAAAAAAAAAAGAA----------------------- 1350
consensus_12508#2 CTTCTTGTTGGTATAGTTTTTAATTTTGTTGTCGTGGGTGTACCTGCATGCATACATAAC 1307
consensus_12508#3 CTTCTTGTTGG------------------------------------------------- 1142
***********
consensus_12508#0 ------------------------------------
consensus_12508#1 ------------------------------------
consensus_12508#2 CCCAAGACTAATTCATTTGCTGTGCATATACATTGA 1343
consensus_12508#3 ------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||