Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12511 cluster # 12511       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12511#0 length = 1780 sequences # 8  
consensus_12511#1 length = 1528 sequences # 2  

consensusID : consensus_12511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1780
fasta sequence
                              [TATCGCACATGCTCATCGCTGCTTCTTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCTTTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGTCATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGAAGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAG-TTTATGAAGAAATCAAAGCAGCCATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCTTCAAAGGATGAAGGTTTCATAATTTTCCGTTGATACATTAGCATGTTTTAGCAGAAGAAATGTACAATAGCTATCACTGTTTCGGGTTTGATCGTCTTAATGAATCTCACTTGTTTATAGATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGATCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTC-TTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACA-GACTAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATGTTGTGTATTCATTCACTGTGGGTGTGAATACTGACTCTACTGAGATTATACTCTGTCTGTCTCTAAATATAAGGGATTATACTATGTCTGTCTCTAAATATAATGGATTTTAGTCGAATGT]

[+] EMBL AK105067             [TATCGCACATGCTCATCGCTGCTTCTTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCTTTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGTCATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGAAGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAG TTTATGAAGAAATCAAAGCAGCCATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCTTCAAAGGATGAAGGTTTCATAATTTTCCGTTGATACATTAGCATGTTTTAGCAGAAGAAATGTACAATAGCTATCACTGTTTCGGGTTTGATCGTCTTAATGAATCTCACTTGTTTATAGATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGATCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTC TTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACA GACTAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATGTTGTGTATTCATTCACTGTGGGTGTGAATACTGACTCTACTGAGATTATACTCTGTCTGTCTCTAAATATAAGGGATTATACTAT                                    ]
[+] EMBL CF295112             [ ATCGCACATGCTCATCGCTGCTTCTTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCTTTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB667163             [                                                     AATCTCTTTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGTCATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGAAGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAGTTTTATGAAGAAATCAAAGCAGCCATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCTTCAAAGGATGAAGGTTTCATAATTTTCCGTTGATACATTAGCATGTTTTAGCAGAAGAAATGTACAATAGCTATCACTGTTTCGGGTTTGATCGTCTTAATGAATCTCACTTGTTTATAGATAAGAAGATACTTACAAAGTTGGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB667164             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGATCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTCTTTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACA GACTAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATGTTGTG                                                                                                                    ]
[-] EMBL CB670094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGAGTGATTCCGTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTC TTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACAGGACTAGTGACGATTACAAGGGAGAAAAAGAAGAGGAACAAATGTTGTGTt                                                                                                                  ]
[-] EMBL CB658075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAGTACAATCTAATGGAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTG   AGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTC TTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACA GACTAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATGTTGTGTATTCATTCACTGTGGGTGTGAATACTGACTCTACTGAGATTATACTCTG                                                                  ]
[-] EMBL CF295113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTC TTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTTTCGTGTACAAAATACA GACTAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATGTTGTGTATTCATTCACTGTGGGTGTGAATACTGACTCTACTGAaaaaaaaaa                                                                     ]
[+] EMBL CA764029             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTGCTTAATTACTCCATTTC  TTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACA GACTAGTGACGATTACCTATGAGGAAAAGAAGAGGAACAAATGTTGTGTATTCATTCCCTGTGGGTGTGAATACTGACTCTACTGAGATTATACTCAGTCTGTCTCTAAATATAAGGGATTATACTATGTCTGTCTCTAAATATAATGGATTTTAGTCGAATGT]


>consensus_12511#0 TATCGCACATGCTCATCGCTGCTTCTTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCT TTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCC GCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCC AATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGG TTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAAT CGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGT TGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGT TCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAG CTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGT CATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGA AGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAGTTTATGAAGAAATCAAAGCAGCC ATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCT TCAAAGGATGAAGGTTTCATAATTTTCCGTTGATACATTAGCATGTTTTAGCAGAAGAAA TGTACAATAGCTATCACTGTTTCGGGTTTGATCGTCTTAATGAATCTCACTTGTTTATAG ATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGAT CCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGG AGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTC AGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGT TCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGC AGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGA ACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATG GATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCAC CAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGC CGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGT CGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCA TGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCC ATTTCTTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACAGACT AGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATGTTGTGTATTCATTCACTGTGG GTGTGAATACTGACTCTACTGAGATTATACTCTGTCTGTCTCTAAATATAAGGGATTATA CTATGTCTGTCTCTAAATATAATGGATTTTAGTCGAATGT



consensusID : consensus_12511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1528
fasta sequence
                              [TTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCTTTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGTCATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGAAGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAGTTTTATGAAGAAATCAAAGCAGCCATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCTTCAAAGGATGAAGATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGATCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTCTTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACAGACTAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATG]

[+] EMBL AK066969             [TTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCTTTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGTCATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGAAGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAGTTTTATGAAGAAATCAAAGCAGCCATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCTTCAAAGGATGAAGATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGATCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTCTTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACAGACTAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATG]
[+] EMBL CB658074             [                GCCGCCGCCTGAAATCTCTTTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGTCATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGAAGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAGTTTTATGAAGAAATCAAAGCAGCCATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCTTCAAAGGATGAAGATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGATCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_12511#1 TTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCTTTCTTGATTCGTGCGCTCCTGAGCT ACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCCGCAAGATGGTTCTGGTAGAGGTGAA TTCTCAGACAATTTGGTACTTCAAACCCCACAGCCAATGCGGGAGGATTACATACAGAAT GCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGGTTCTCCAGTATTTTACAGGCGCTCT TTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAATCGACGAGGCCTTCCGTCGGGTTCCT GATCCACAGCCAAACAGTACAGATGTTGCAGCTGTTGCTTCACAACAAGCCGGCATCGCA AATCAATCTGCTGGAGTACAACCTTACGAGACAGTTCAAGCACCACAAGCCATTAACACT GGTCCTATCGTTCCACATGCGCAGCCGCAACTTAGCTGGTCCCGTACTCTCATTGGTGTA GGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGTCATCCTCAAGAAATTGTTTGTTCCT AGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGAAGGGGATGAAATTTCTGGGAATGAA CTTAAATCCAAGTTTTATGAAGAAATCAAAGCAGCCATACAAGATTCTGCATCAGCGTTT TCTGATATTGCTAAAACAAACCAAGAGTTGCTTGCTTCAAAGGATGAAGATAAGAAGATA CTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGATCCTTGAGTGAT TCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATGGAGGATCATTTT CAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCTCAGCAAACAAAC GCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCGTTCATGCCAGTA CCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAGCAGCAGCGGATG CAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGGAACCCTGGCTCG CCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCATGGATCCACCAAC GCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCACCAGCTGAAAGC CCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATGCCGGAGGCCGTG GCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCGTCGGAATCCGCC GCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCCATGGCCAATGCG GGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTCCATTTCTTTTTT TTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACAGACTAGTGACGATTA CCTATGAGAAAAAGAAGAGGAACAAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12511#0      TATCGCACATGCTCATCGCTGCTTCTTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCT 60
consensus_12511#1      -------------------------TTTCCTCCGACGACTCGCCGCCGCCTGAAATCTCT 35
                                                ***********************************

consensus_12511#0      TTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCC 120
consensus_12511#1      TTCTTGATTCGTGCGCTCCTGAGCTACCCCGATGGCCGCCCAATCTTCCACTCCCTCGCC 95
                       ************************************************************

consensus_12511#0      GCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCC 180
consensus_12511#1      GCAAGATGGTTCTGGTAGAGGTGAATTCTCAGACAATTTGGTACTTCAAACCCCACAGCC 155
                       ************************************************************

consensus_12511#0      AATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGG 240
consensus_12511#1      AATGCGGGAGGATTACATACAGAATGCTGTTAACTTTCTTGGACATCCAAAAGTGAAGGG 215
                       ************************************************************

consensus_12511#0      TTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAAT 300
consensus_12511#1      TTCTCCAGTATTTTACAGGCGCTCTTTTCTGGAAAAGAAAGGCCTTACAAAGGAAGAAAT 275
                       ************************************************************

consensus_12511#0      CGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGT 360
consensus_12511#1      CGACGAGGCCTTCCGTCGGGTTCCTGATCCACAGCCAAACAGTACAGATGTTGCAGCTGT 335
                       ************************************************************

consensus_12511#0      TGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGT 420
consensus_12511#1      TGCTTCACAACAAGCCGGCATCGCAAATCAATCTGCTGGAGTACAACCTTACGAGACAGT 395
                       ************************************************************

consensus_12511#0      TCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAG 480
consensus_12511#1      TCAAGCACCACAAGCCATTAACACTGGTCCTATCGTTCCACATGCGCAGCCGCAACTTAG 455
                       ************************************************************

consensus_12511#0      CTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGT 540
consensus_12511#1      CTGGTCCCGTACTCTCATTGGTGTAGGTGTTTTCCTCGGAGTTGGGGCTAGTGCTGCTGT 515
                       ************************************************************

consensus_12511#0      CATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGA 600
consensus_12511#1      CATCCTCAAGAAATTGTTTGTTCCTAGGCTAAAATCTTGGATCCAAGGAGCCCATGTTGA 575
                       ************************************************************

consensus_12511#0      AGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAGTTT-ATGAAGAAATCAAAGCAGC 659
consensus_12511#1      AGGGGATGAAATTTCTGGGAATGAACTTAAATCCAAGTTTTATGAAGAAATCAAAGCAGC 635
                       **************************************** *******************

consensus_12511#0      CATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGC 719
consensus_12511#1      CATACAAGATTCTGCATCAGCGTTTTCTGATATTGCTAAAACAAACCAAGAGTTGCTTGC 695
                       ************************************************************

consensus_12511#0      TTCAAAGGATGAAGGTTTCATAATTTTCCGTTGATACATTAGCATGTTTTAGCAGAAGAA 779
consensus_12511#1      TTCAAAGGATGAAG---------------------------------------------- 709
                       **************                                              

consensus_12511#0      ATGTACAATAGCTATCACTGTTTCGGGTTTGATCGTCTTAATGAATCTCACTTGTTTATA 839
consensus_12511#1      ------------------------------------------------------------
                                                                                   

consensus_12511#0      GATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGA 899
consensus_12511#1      -ATAAGAAGATACTTACAAAGTTGGCACAAGCATTTGATTCGCAAGCAGAGGCGTTTAGA 768
                        ***********************************************************

consensus_12511#0      TCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATG 959
consensus_12511#1      TCCTTGAGTGATTCCTTGAATCGTATGAGTGAGAATAGGTTTTACCAGTACAATCTAATG 828
                       ************************************************************

consensus_12511#0      GAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCT 1019
consensus_12511#1      GAGGATCATTTTCAATCTGCCCCATGGAATGGGCCAACTACAAATTCATGGAGAGCTTCT 888
                       ************************************************************

consensus_12511#0      CAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCG 1079
consensus_12511#1      CAGCAAACAAACGCATACAACACATCACCACGCAGTGATTTTGACTCCGGGAGGCATCCG 948
                       ************************************************************

consensus_12511#0      TTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAG 1139
consensus_12511#1      TTCATGCCAGTACCGGGAGAACCTTCACCTGGAGCATTTCCGGCGAGATCCTATGTTGAG 1008
                       ************************************************************

consensus_12511#0      CAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGG 1199
consensus_12511#1      CAGCAGCGGATGCAGAGGCCTGGGTACGGATTTCAGCCTCAGATGAGCAATGACAGGTGG 1068
                       ************************************************************

consensus_12511#0      AACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCAT 1259
consensus_12511#1      AACCCTGGCTCGCCATTGACGAACTACCACGGTGCTCCTCCGTATCAGCAGTATCACCAT 1128
                       ************************************************************

consensus_12511#0      GGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCA 1319
consensus_12511#1      GGATCCACCAACGCCATCGATGAAGCTCCAGCTCCAGCTCCAGTTCCAGCTCCAGCTCCA 1188
                       ************************************************************

consensus_12511#0      CCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATG 1379
consensus_12511#1      CCAGCTGAAAGCCCGTTCCAGCGTCGCTGGGTTCCCCCACAGCCACCGGGCGTCGTCATG 1248
                       ************************************************************

consensus_12511#0      CCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCG 1439
consensus_12511#1      CCGGAGGCCGTGGCCGCCATACGGCAGCCGAGGCAGCAAGTTGCAGCGGCATCGAGACCG 1308
                       ************************************************************

consensus_12511#0      TCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCC 1499
consensus_12511#1      TCGGAATCCGCCGCGGCGACAGAGCAGCCACAGTCAGGTGACGTCGCCGGTGGCGCCGCC 1368
                       ************************************************************

consensus_12511#0      ATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTC 1559
consensus_12511#1      ATGGCCAATGCGGGCAATGGCGAGGCCGAGCAAGAGCGGGAAGCTGCTGCTTAATTACTC 1428
                       ************************************************************

consensus_12511#0      CATTTCTTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACAGAC 1619
consensus_12511#1      CATTTCTTTTTTTTTTGTTTGCCACGCGATGCATGCGTCTCTCGTGTACAAAATACAGAC 1488
                       ************************************************************

consensus_12511#0      TAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATGTTGTGTATTCATTCACTGTG 1679
consensus_12511#1      TAGTGACGATTACCTATGAGAAAAAGAAGAGGAACAAATG-------------------- 1528
                       ****************************************                    

consensus_12511#0      GGTGTGAATACTGACTCTACTGAGATTATACTCTGTCTGTCTCTAAATATAAGGGATTAT 1739
consensus_12511#1      ------------------------------------------------------------
                                                                                   

consensus_12511#0      ACTATGTCTGTCTCTAAATATAATGGATTTTAGTCGAATGT 1780
consensus_12511#1      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)