These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 780 fasta sequence [GGTTTGAATCCCNTCCAGCGTCGGGAGGATGGCGGCGACGNTGAACGAGCTCGTCGTGCTCAA-TTCC-GGCGTGCGGTCCTGNATCCCGCCGG-AGATC-GGCCACCTCGGGGAGTTCACCGTGCTCGACGTCAGCAACAACCAGNTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT-NTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA-TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC--AAAAAAATGTTTGTTTGTCTGTTTGTTGGGTATTTTCGTATATACTATAGTAGTTAATTAGTAAAAAAAA] [+] EMBL AU032129 [GGTTTGAATCCCNTCCAGCGTCGGGAGGATGGCGGCGACGNTGAACGAGCTCGTCGTGCTCAA TTCC GGCGTGCGGTCCTGNATCCCGCCGG AGATC GGCCACCTCGGGGAGTTCACCGTGCTCGACGTCAGCAACAACCAGNTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT NTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTACTGATAAAAAa ] [+] EMBL AU092661 [ CTCGTCGTGCTCAACTTCCGGGCGTCCGGTCCTGCATCCCGCCGGAAGATCGGGCCACCTCGGGAAGCTCACCGTGCTCGACGTCAGCACCAACCAGCTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCTGCTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAATTTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA AAA ] [+] EMBL C22351 [ ACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT NTTCGCGCCGCCGGNCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC AAAAA ] [+] EMBL AU181509 [ TACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGACCGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCTGCTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA AAAAAAA ] [+] EMBL C22382 [ GAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCACTGCGACGCCCACGGCT GTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC TGATCATTGTTTGTTTGTCTGTTTGTTGGGTATTTTCGTATATACTATAGTAGTTAATTAGTAAAAAAAA] [+] EMBL AU097014 [ GTGAAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCANTCAATCAAGCNTCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTNTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAC TGATCATTGTTTGTTaaaaaaa ] [+] EMBL AU161882 [ CTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAA TTTTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA AAAA ] [-] EMBL AI978384 [ CTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGT ] [+] EMBL AU095461 [ TTTGTTTTCTTNTTCTTTTTCACAGAGAGGTTGGTAATTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTAA AAAAA ] [+] EMBL AI978383 [ TTAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||