cluster # 12521

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12521 cluster # 12521 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12521#0 length = 719 sequences # 8

consensus_12521#1 length = 595 sequences # 2

consensusID : consensus_12521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 719
fasta sequence

                              [CTTTTTGGTGCCATTTTGAGACAAAAGATGGACTCTGCAACCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTCGCGCCACCCGCCGCGCGAGCCGAGCCTCTCCATCACGGCGGCGC]

[+] EMBL CB645995             [CTTTTTGGTGCCATTTTGAGACAAAAGATGGACTCTGCAACCTTCACATCAAACGGCTGGTCGTAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAAAGAAGAGAAGTATTTGGTTGTGTGTACTAGAAATCTCCTTGAGGCGGAGCAGCTGGATCCAAATCGAGATCTTGGATCTTGGCGGGGTTCATCGTCAATGGCGGATCGGATCGGATCACATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCAAACCACGGACCAGTTCTTGGTCTTTACGTCGAACACCCAAAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCAACCTCGCGCCACCCGCCGCGCGAGCCGA                     ]
[+] EMBL CB662103             [CTTTTTTTTTTCATTTTGAGACAAAAGATGGACTCTGCAACCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAAATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGG                                                      ]
[+] EMBL CB675675             [                  ccttAAAAAATGGACTCTGCAATCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGACAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTACAGTAGAGTACTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCAAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACAACACGCTCGCCGCCGCCGACGCAAACGG                                                                                          ]
[+] EMBL CB660641             [                                                                   ATGTACAATGGATTGGCTTATTGCTACTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAAAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCG                                                               ]
[+] EMBL CB667567             [                                                                    TGTACAATGGATTGGATTATTCCTTCTCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGATCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTT                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB647075             [                                                                                              TCATAACCATAACCATGGTTGAACGATGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGAGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGATAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAATCCTCGATGGCGCCGGTGACGACTACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTCG                                           ]
[+] EMBL CB669594             [                                                                                                                                                       CCTTGATTCCTCCATGGTTTTCTTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAATAGAGATCTCCTTGAGGCGGACCAGCTGGATCCAGATCCAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCACATGCGGACGGCGGCCACGGACAAGGCCAATCCGGCGAACTCTGGAGGTGGGCGAACCACCGCCCACTTCTTGGTCTTTACtac                                                                                                                                                                                      ]
[+] EMBL CB644685             [                                                                                                                                                                 TCCTTTTTTTGCGGGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGGCTTTACAACGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACAACGACGCGCTCGCCGCCGTCGACTCAAACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTTGCGCCACCCGCCGCGCGAGCCGAGCCTCTCCATCACGGCGGCGC]




>consensus_12521#0
CTTTTTGGTGCCATTTTGAGACAAAAGATGGACTCTGCAACCTGCACCTCAAACGGCTGG
TCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACGA
TGGAGGATGAGGAGGAGATCCAAGATCATCCCCTTGATTCCTCCATGGTTTTCTTGGACA
AAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAGATTGGGGAGAGATAG
AGAGAGGAGAGGAGCTTCACAAACTCACCACTAGCTTCCTCTCCTTCTCTTCTCCTTGTG
ATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAGTAGTATTTGGTTGTGTGT
AGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGATCGAGATCTTGGATCTTGGCGG
GGTTCGTCGTCAATGGCGGATCGGATCGGATCAGATGCGGACGGCGGCGACGGAGAAGGC
GAATCCGGCGAACTCTGGAGGTGGGCGAACCACGGTCCAGTTCTTGGTCTTTACGTCGAA
CACCCAGAGGGCGTGGCGGCCGGACCCGCCGTCGGAGTCCTCGATGGCGCCGGTGACGAC
GACGCGCTCGCCGCCGCCGACGCAGACGGCGCGGGCGGTGCCGGCCTTGAGGCCCGGGGG
GGAGGGGCCGACCTCGCGCCACCCGCCGCGCGAGCCGAGCCTCTCCATCACGGCGGCGC

consensusID : consensus_12521#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence

                              [TTTTTTTTTTTTAATTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATGGATTATTGCTACTAATAAGTGAACGATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCA-TGGTTTTCT-TGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACATCTCACCACGAACTCACCACCAGCTTCCTCTCCTCTTCTCCTTGTGATTCTTTCTTGGGCACATACTACTGTTCTAGTAGAGTAGAGTAGAGTAGTATTTGGTTGTATGNTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGAACGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCGGATCAGATGCGGACGGCGGCAACGGAAAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGGACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGNCCCCCTTGTCT]

[+] EMBL CA761161             [TTTTTTTTTTTTAATTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCTGGTCATAATATGTACAATGGATGGATTATTGCTACTAATAAGTGAACGATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCA TGGTTTTCT TGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATTGGGGAGAGATAGAGAGAGGAGAGGAGCTTCACATCTCACCACGAACTCACCACCAGCTTCCTCTCCTCTTCTCCTTGTGATTCTTTCTTGGGCACATACTACTGTTCTAGTAGAGTAGAGTAGAGTAGTATTTGGTTGTATGNTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGAACGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCGGATCAGATGCGGACGGCGGCAACGGAAAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGGACCACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGNCCCCCTTGTCT]
[-] EMBL BI801587             [             tTTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCGGGTCATAATATGTACAAGGGATGGATTATTGCTACTAATAAGTGAACGATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCAGTGGTTTTCTGTGGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATGGGGGAGAGATAGAGAGAGG                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_12521#1
TTTTTTTTTTTTAATTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCTG
GTCATAATATGTACAATGGATGGATTATTGCTACTAATAAGTGAACGATGGAGGATGGAG
GAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCATGGTTTTCTTGGACAAAAACACC
ACACTCATCATCATCATCATCCTCACAACAACAACAACAGATTGGGGAGAGATAGAGAGA
GGAGAGGAGCTTCACATCTCACCACGAACTCACCACCAGCTTCCTCTCCTCTTCTCCTTG
TGATTCTTTCTTGGGCACATACTACTGTTCTAGTAGAGTAGAGTAGAGTAGTATTTGGTT
GTATGNTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCAGAACGAGATCTTGGATC
TTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCGGATCAGATGCGGACGGCGGC
AACGGAAAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGGACCACGGTCCAGTTCTTGGT
CTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCGNCCCCCTTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12521#0      -CTTTTTGGTGCCATTTTGAGACAAAAGATGGACTCTGCAACCTGCACCTCAAACGGCTG 59
consensus_12521#1      TTTTTTTTTTTTAATTTTGAGACAAAAGATGGACTCTGCAATCTGCACCTCAAACGGCTG 60
                         *****  *   **************************** ******************

consensus_12521#0      GTCATAATATGTACAATGGATTGGATTATTGCTACTCATAACCATAACCATGGTTGAACG 119
consensus_12521#1      GTCATAATATGTACAATGGAT-GGATTATTGCTACTAATAAG------------TGAACG 107
                       ********************* ************** ****             ******

consensus_12521#0      ATGGAGGATG-AGGAGGAGATCCAAGATCA---TCCCCTTGATTCCTCCATGGTTTTCTT 175
consensus_12521#1      ATGGAGGATGGAGGAGAAGATCCAAGATCACCATCCCCTTCAATCCTCCATGGTTTTCTT 167
                       ********** ***** *************   ******* * *****************

consensus_12521#0      GGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACA---GATTGGGG 232
consensus_12521#1      GGACAAAAACACCACACTCATCATCATCATCATCCTCACAACAACAACAACAGATTGGGG 227
                       *************************************************   ********

consensus_12521#0      AGAGATAGAGAGAGGAGAGGAGCTTCACA----------AACTCACCACTAGCTTCCTCT 282
consensus_12521#1      AGAGATAGAGAGAGGAGAGGAGCTTCACATCTCACCACGAACTCACCACCAGCTTCCTCT 287
                       *****************************          ********** **********

consensus_12521#0      CCTTCTCTTCTCCTTGTGATTCTTTTCTTGTGCACATACTACTGTTCTAGTAGAGTAGAG 342
consensus_12521#1      CCT---CTTCTCCTTGTGATTCTTT-CTTGGGCACATACTACTGTTCTAGTAGAGTAGAG 343
                       ***   ******************* **** *****************************

consensus_12521#0      TAG-----TATTTGGTTGTGTGT-AGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCA 396
consensus_12521#1      TAGAGTAGTATTTGGTTGTATGNTAGTAGAGATCTCCTTGAGGCGGAGCAGCTGGATCCA 403
                       ***     *********** **  ************************************

consensus_12521#0      GATCGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATC---- 452
consensus_12521#1      GAACGAGATCTTGGATCTTGGCGGGGTTCGTCGTCAATGGCGGATCGGATCGGATCGGAT 463
                       ** *****************************************************    

consensus_12521#0      -AGATGCGGACGGCGGCGACGGAGAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGAACC 511
consensus_12521#1      CAGATGCGGACGGCGGCAACGGAAAAGGCGAATCCGGCGAACTCTGGAGGTGGGCGGACC 523
                        **************** ***** ******************************** ***

consensus_12521#0      ACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCG 571
consensus_12521#1      ACGGTCCAGTTCTTGGTCTTTACGTCGAACACCCAGAGGGCGTGGCGGCCGGACCCGCCG 583
                       ************************************************************

consensus_12521#0      TCGGAGTCCTCGATGGCGCCGGTGACGACGACGCGCTCGCCGCCGCCGACGCAGACGGCG 631
consensus_12521#1      NCCCCCTTGTCT------------------------------------------------ 595
                        *    *  **                                                 

consensus_12521#0      CGGGCGGTGCCGGCCTTGAGGCCCGGGGGGGAGGGGCCGACCTCGCGCCACCCGCCGCGC 691
consensus_12521#1      ------------------------------------------------------------
                                                                                   

consensus_12521#0      GAGCCGAGCCTCTCCATCACGGCGGCGC 719
consensus_12521#1      ----------------------------