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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2230 fasta sequence
[GGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACGGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGGTAAGTTTGCTCCAGAAAACCATGTCTTCCCCCAGCAATTTCAGTTCTTAGAAGAAGCTATAGTAATACTGCTTTAATCTTAGACTATGGGCATGGTTCTTTTTCGCATGAGTATGTCTTAGAATGGGGAGAATAGCTACTGTAGTCCCTAAAGTTTCTATGTAGGATCATTTTAGTCCCTAACCTTTTAAATAGTTCAAAGAAATCCTTAAACTTTGTCATAAGGCCTAGAATAATCCTTGGGTCCACCAAAATCGTCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATAAATTGTCTAGTTTACCTTTATGTATATCATAGAAAAATAAATGTAAGGGTGAATTAGACATAACCATAGGGAAAAAAATACTTTTCCTTTTTTTCACCCTTTTGACGTATATTTTTGCTCTTACATATACCATATATTTTTTAATTTTTCCTTTTGTTTTTTATTTTCCTATGATATATGTAAATATAAATTGGACAAATCATATAGATTTTGCATAGGAGGGTGACATGGCATGTCCATGTGGCGATTTTGATGGGACCAAGGACTATATCAGCCCATGTGACAAATTTAAAGGACTTGTTTGAACAATATGAAAAATTAAGGACTAAAATGGCCCAGGAGCGAAACTTTAGGGACCATCTTGGCTATTCTCCCTCTTAGAATGTACAACTAATGATGGACTGAGACTTGATCTTCTTGTATCTGAGGGAGGTGCTTCTGTAATTCCGTTGTTCTTTAAAATGTAATCCATTATGAAATGCACTTAGTGAAGCATTATAGTACACACTATCTGACTTTTACTTGCATAAATCTTGTTAATTGCTGTCTTTTATTGTTGCAATCAGTGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTA-CCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAAACTCTATAGTAGAACCGTATAAAATTTCAGGTTTTTACTTTGTACTAAGAATTCTGCGTGCAAAAGGTTTCAGAGCACAACTGCTGCTGCTTCCTG]
[+] EMBL AK121186 [GGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACGGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGGTAAGTTTGCTCCAGAAAACCATGTCTTCCCCCAGCAATTTCAGTTCTTAGAAGAAGCTATAGTAATACTGCTTTAATCTTAGACTATGGGCATGGTTCTTTTTCGCATGAGTATGTCTTAGAATGGGGAGAATAGCTACTGTAGTCCCTAAAGTTTCTATGTAGGATCATTTTAGTCCCTAACCTTTTAAATAGTTCAAAGAAATCCTTAAACTTTGTCATAAGGCCTAGAATAATCCTTGGGTCCACCAAAATCGTCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATAAATTGTCTAGTTTACCTTTATGTATATCATAGAAAAATAAATGTAAGGGTGAATTAGACATAACCATAGGGAAAAAAATACTTTTCCTTTTTTTCACCCTTTTGACGTATATTTTTGCTCTTACATATACCATATATTTTTTAATTTTTCCTTTTGTTTTTTATTTTCCTATGATATATGTAAATATAAATTGGACAAATCATATAGATTTTGCATAGGAGGGTGACATGGCATGTCCATGTGGCGATTTTGATGGGACCAAGGACTATATCAGCCCATGTGACAAATTTAAAGGACTTGTTTGAACAATATGAAAAATTAAGGACTAAAATGGCCCAGGAGCGAAACTTTAGGGACCATCTTGGCTATTCTCCCTCTTAGAATGTACAACTAATGATGGACTGAGACTTGATCTTCTTGTATCTGAGGGAGGTGCTTCTGTAATTCCGTTGTTCTTTAAAATGTAATCCATTATGAAATGCACTTAGTGAAGCATTATAGTACACACTATCTGACTTTTACTTGCATAAATCTTGTTAATTGCTGTCTTTTATTGTTGCAATCAGTGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTA CCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAAACTCTATAGTAGAACCGTATAAAATTTCAGGTTTTTACTTTGTACTAAGAATTCTGCGTGCAAAAGGTTTCAGAGCACAACTGCTGCTGCTTCCTG]
[+] EMBL OSS12530A [ TGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTA CCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTANCTAAA ]
[+] EMBL OSS13353A [ TGCTGCTTGACAAATATTTCAGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACNCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGACGTATAGGGGAAGGATCAATTGATAGNATTAATNAAGGAGGCTACCCTTG ]
[+] EMBL BE229786 [ gaTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAAGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACNAGCTGCANGTTATTGAGGGAGCAAATCNTAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTNGTGGATTTCATCACATCTAATTAGTTCTGCATGTCTGAGANACTGANACAACCTCATTCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTANGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCANAAAGCANGTGTNTCCGTGTATATTANTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGT CCTACAGGATTCCTGTTAATATCNAACTCTATAATANAACCGTNTAAAATTTCNGGGTNTTt ]
consensusID : consensus_12540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1456 fasta sequence
[ATTCATTGCGGCATTTACTTTAAAGAAGCCACAACCGTGAATTACAAAATCACACCTTAATTAAAAATAATAGGGAGAATAGCTACTTTAGTCCCTAAAGTTTCTCTGTAGGATCAGTTTAGTCCTTAACCTTTTAAATGGTCCAAAGAAATCCTTAACCTATGTCATAAGGCCTAGAATAGTCCTTGGGTCCACCAAAATCATCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATGAATTGTCTAATTTACCCTTACGTATATCATAGAAAAATAAATATAAGGGTAAATTAGACATAACCATAGGAAAAAAAATACTTGTTTTTTTACCCTTTTGAAGTATATGTTTGCTCTTACATATACCATATATTTTTTAACTTTTTCCTTTTGTTTTTTATCTTCCTATGCATAAAGGTAAATTGGACAAATCATATAGATTTTGCATATGAAGGTGACATGGCATGTCTATGTGGCGATTTTGGTGGGACCAAAGACTATATTAGCCCACATGATAAATTTAAAGGACTTGTTTGGATAATATGAAAGATTAAGGACTAAAATGACCCATGAGCGAAATTTTAGAGACCATATTAGCTATTCTCTCAAAATAATAAGAAAACTTCTCTCAATAGCCGCCTAAAGATAAAGTTATCACTTATCTATGGTTGACAAGTACCACCATTGGCTTGGCGGCTTTCAAGCTATATACATTTCTTGTCTATCTCGAACCAGAAAATAGAATATCAGAAATCAGCAACCGATTATTGTGCCGATCTAATTTTTCTCACGTCATTGCCAGTGGCAATCACCAAACCAAAACGAAAGATAACATCAGATAGTAAACTGAGAGTCGCTCGGCTAGATCTTGCCATCAACACAACCATCTTGGCCGATCTAGCGAGTACAGTGCGATGTAGGATGCACCACCCTCCTACCATTCCCATCATTGACGCGGCCGCGCTCAAGCAGGTCACCACCAAATGCGCGACCTTCATATGCAGCAACACCACTCCATGCGTCTTAACCTTGGTGGCCAGGACAAGATGATACTACTATGGTAAAACGATGATAAGACAGTGGCACCACGGGCCACGGCTGCCTAGCTGACCAAATCAAAGGCAATTTTCTGCCGGAACCAGCTTCAATGGCGTCGGGATCAGCCGGTGGCGAATCGATGGATGGACGCCATCTTCATCGGATGATTGCCATCACCGCCACCGCGCCACCGTCGTCGCCATGGGATCTGATCGATCGATCCGAGATATGGAGAAACTGTGATCCTTCACGCGAAGCTCAATCGCGTTGTGATCACGTGATCCACCGGAGCGCCCAACGCTGGTGTAAACGATGGTCGCCACAGATGGATGATCTAGTAAAATTCTTTCACAGTGCGTACATGTGGTGTTCTGCTTCCATACGTCTTTTTTTTTTTTTTTTTTTTTTTTT]
[-] EMBL AK106600 [ATTCATTGCGGCATTTACTTTAAAGAAGCCACAACCGTGAATTACAAAATCACACCTTAATTAAAAATAATAGGGAGAATAGCTACTTTAGTCCCTAAAGTTTCTCTGTAGGATCAGTTTAGTCCTTAACCTTTTAAATGGTCCAAAGAAATCCTTAACCTATGTCATAAGGCCTAGAATAGTCCTTGGGTCCACCAAAATCATCATATGGATATGCCATGTCATCATTCATGCAAAATCTATGATGAATTGTCTAATTTACCCTTACGTATATCATAGAAAAATAAATATAAGGGTAAATTAGACATAACCATAGGAAAAAAAATACTTGTTTTTTTACCCTTTTGAAGTATATGTTTGCTCTTACATATACCATATATTTTTTAACTTTTTCCTTTTGTTTTTTATCTTCCTATGCATAAAGGTAAATTGGACAAATCATATAGATTTTGCATATGAAGGTGACATGGCATGTCTATGTGGCGATTTTGGTGGGACCAAAGACTATATTAGCCCACATGATAAATTTAAAGGACTTGTTTGGATAATATGAAAGATTAAGGACTAAAATGACCCATGAGCGAAATTTTAGAGACCATATTAGCTATTCTCTCAAAATAATAAGAAAACTTCTCTCAATAGCCGCCTAAAGATAAAGTTATCACTTATCTATGGTTGACAAGTACCACCATTGGCTTGGCGGCTTTCAAGCTATATACATTTCTTGTCTATCTCGAACCAGAAAATAGAATATCAGAAATCAGCAACCGATTATTGTGCCGATCTAATTTTTCTCACGTCATTGCCAGTGGCAATCACCAAACCAAAACGAAAGATAACATCAGATAGTAAACTGAGAGTCGCTCGGCTAGATCTTGCCATCAACACAACCATCTTGGCCGATCTAGCGAGTACAGTGCGATGTAGGATGCACCACCCTCCTACCATTCCCATCATTGACGCGGCCGCGCTCAAGCAGGTCACCACCAAATGCGCGACCTTCATATGCAGCAACACCACTCCATGCGTCTTAACCTTGGTGGCCAGGACAAGATGATACTACTATGGTAAAACGATGATAAGACAGTGGCACCACGGGCCACGGCTGCCTAGCTGACCAAATCAAAGGCAATTTTCTGCCGGAACCAGCTTCAATGGCGTCGGGATCAGCCGGTGGCGAATCGATGGATGGACGCCATCTTCATCGGATGATTGCCATCACCGCCACCGCGCCACCGTCGTCGCCATGGGATCTGATCGATCGATCCGAGATATGGAGAAACTGTGATCCTTCACGCGAAGCTCAATCGCGTTGTGATCACGTGATCCACCGGAGCGCCCAACGCTGGTGTAAACGATGGTCGCCACAGATGGATGATCTAGTAAAATTCTTTCACAGTGCGTACATGTGGTGTTCTGCTTCCATACGTCTTTTTTTTTTTTTTTTTTTTTTTTT]
consensusID : consensus_12540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1314 fasta sequence
[GTCACTCCCCACCTGTATGTACCCTTGGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACAGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAGGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTCTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA-GA-GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAAAAAA]
[+] EMBL AK067848 [GTCACTCCCCACCTGTATGTACCCTTGGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCACCGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACAGTCTCATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTTCAGTGGAAATGGAGAAAGTGAAGGAGAATTCGAGTATGGAAACTACAGGAAAGAGGCTGATGATTTGCACTCCGTTGTATCATATCTTTGTAAGGAAAAGTATGATGTAACAGCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCGATATACGTGCTGTAGGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATAAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTCTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA GA GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAA ]
[+] EMBL CA764574 [ GTAACTCTATATGCTTCTATTTATGATGATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAACGTATAGGGGAAGGATCAATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCAGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAACACCAATATACGTGCTGTAAGCATGTCCATTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCAGCAGATGAGACTATACCTGTGGAAGACGCCTATGAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGAGCAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCAGGTCTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA GA GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATGAAATAAGCAGAAAGCAGGTGTATC ]
[+] EMBL AU088707 [ TTCATCACATCTAATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTNTCTATGGGCCCTTCAGAAATTACTCTTTTCTCCACAGTTCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGA GA GATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCNAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAAAAAA]
[+] EMBL AU088684 [ TCTGCATGTCTGAGAGACTGAGACAACCTCATTCACGANGANGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTGCCTTTTCTCCTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGCAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAAAA ]
consensusID : consensus_12540#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[TGAAAGAACGTATAGGGGAAGGGACCATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCACGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAGCACCGATATACGTGCTGTAAGCATGTCCCTTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCACAGATGAGACTATACCTGTGGAAGACGCCTATGAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGACAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAAATCTTTGGGGAATCAAATAACAGAAACAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAACTCTATAGTAGAACCATATAAAATTTCAGGTTTGTACTAAAAAAAA]
[+] EMBL BM038694 [TGAAAGAACGTATAGGGGAAGGGACCATTGATAGAATAAATAAAGAAGGCTACCTTGATGTCAAGGATAAATCACGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAGCGGCTCAGCACCGATATACGTGCTGTAAGCATGTCCCTTACCAAGGAATGCAGGTTCTTCACAGTTCACGGTTCACAGATGAGACTATACCTGTGGAAGACGCCTATGAGTTTGCGAAGCATATACCGAATCACAAGCTGCAAGTTATTGAGGGACAAATCATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCTAATTAGGTATAAATCTTTGGGGAATCAAATAACAGAAACAGGTGTATCCGTGTATATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGATATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAACTCTATAGTAGAACCATATAAAATTTCAGGTTTGTACTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 GGTACGGAGCGTTATGCAGCCACTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTC 60
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 CCCTCCTCCTCCCGCGCTCACTCTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCAC 120
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 CGCCGGAGCCCTCCTCTGCAACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACG 180
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 ACCCCTACCCCCGCCGGCGATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACA 240
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 AAGGGCAGTGGTAGTAACCAACAAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACAC 300
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 GGGTTCAAGCAAGATCGTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACGGTCT 360
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 CATTCTTGACCTGATGGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATTT 420
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 CAGTGGAAATGGGTAAGTTTGCTCCAGAAAACCATGTCTTCCCCCAGCAATTTCAGTTCT 480
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 TAGAAGAAGCTATAGTAATACTGCTTTAATCTTAGACTATGGGCATGGTTCTTTTTCGCA 540
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 TGAGTATGTCTTAGAATGGGGAGAATAGCTACTGTAGTCCCTAAAGTTTCTATGTAGGAT 600
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 CATTTTAGTCCCTAACCTTTTAAATAGTTCAAAGAAATCCTTAAACTTTGTCATAAGGCC 660
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 TAGAATAATCCTTGGGTCCACCAAAATCGTCATATGGATATGCCATGTCATCATTCATGC 720
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 AAAATCTATGATAAATTGTCTAGTTTACCTTTATGTATATCATAGAAAAATAAATGTAAG 780
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 GGTGAATTAGACATAACCATAGGGAAAAAAATACTTTTCCTTTTTTTCACCCTTTTGACG 840
consensus_12540#1 ------------------------ATTCATTGCGGCATTTACTTTAAAGAAGCCACAACC 36
consensus_12540#2 ------------GTCACTCCCCACCTGTATGTACCCTTGGTACGGAGCGTTATGCAGCCA 48
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 TATATTTTTGCTCTTACATATACCATATATTTTTTAATTTTTCCTTTTGTTTTTTATTTT 900
consensus_12540#1 GTGAATTACAAAATCACACCTTAATTAAAAATA--ATAGGGAGAATAGCTACTTTAGTCC 94
consensus_12540#2 CTGGTGAGCACATCCGCCGCAGCAGCTGCGATTCCCTCCCCTCCTCCTCCCGCGCTCACT 108
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 CCTATGATATATGTAAATATAAATTGGACAAATCATATAGATTTTGCATAGGAGGGTGAC 960
consensus_12540#1 CTAA--AGTTTCTCTGTAGGATCAGTTTAGTCCTTAACCTTTTAAATGGTCCAAAGAAAT 152
consensus_12540#2 CTTCCGCCTCCACGCCGGCGAATCCCCCCGCCCCTCA--CCGCCGGAGCCCTCCTCTGCA 166
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 ATGGCATGTCCATGTGGCGATTTTGATGGGACCAAGG--ACTATATCAGCCCATGTGACA 1018
consensus_12540#1 CCTTAACCTATGTCATAAGGCCTAGAATAGTCCTTGGGTCCACCAAAATCATCATATGGA 212
consensus_12540#2 ACCGCACCGGCTCCGGCCACGCCAGCCCGCGGGGAAGACGACCCCTACCCCCGCCGGCG- 225
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 AATTTAAAGGACTTGTTTGAACAATATGAAAAATTAAGGACTAAAATGGCCCAGGAGCG- 1077
consensus_12540#1 TATGCCATGTCATCATTCATGCAAAATCTATGATGAATTGTCTAATTTACCCTTACGTAT 272
consensus_12540#2 ATGTCCCACCCGCTCTCCTCCGAACCTCATGCTTTGGAACAAAGGGC-AGTGGTAGTAAC 284
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 AAACTTTAGGGACCATCTTGGCTATTCTCCCTCTTAGAATGTACAACTAATGATGGACTG 1137
consensus_12540#1 ATCATAGAAAAATAAATATAAGGGTAAATTAGACATAACCATAGGAAAAAAAATACTTGT 332
consensus_12540#2 CAAC--AAGCATGGGGAGAAGCTCGTGGGAGTGCTGCATCACACGGGTTCAAGCAAGATC 342
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 AGAC--TTGATCTTCTTGTATCTGAGGGAGGTGCTTCTGTAATTCCGTTGTTCTTTAA-- 1193
consensus_12540#1 TTTTTTACCCTTTTGAAGTATATGTTTGCTCTTACATATACCATATATTTTT-TAACTTT 391
consensus_12540#2 GTCGTATTGTGTCATGGTTTTATATCTACCAAGAACGACAGT-CTCATTCTTGACCTGAT 401
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 AATGTAATCCATTATGAAATGCACTTAGTGAAGCATTATAGTACACACTATCTGACTTTT 1253
consensus_12540#1 TTCCTTTTGTTTTTTATCTTCCTATGCATAAAGGTAAATTGGACAAATCATATAGATTTT 451
consensus_12540#2 GGCTGCATTGACAAAGAAAGGGATTAGTGTCTTTCGCTTTGATT--------TCAGTGGA 453
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 ACTTGCATAAATCTTGTTAATTGCTGTCTTTTATTGTTGCAATCAGTGCTGCTTGACAAA 1313
consensus_12540#1 GCATATGAAGGTGACATGGCATGTCTATGTGGCGATTTTGGTGGGACCAAAGACTATATT 511
consensus_12540#2 AAT---GGAGAAAGTGAAGGAGAATTCG-------AGTATGGAAACTACAGGA---AAGA 500
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 TATTTCAGAGAAAGTGAAGGAGAATTCG-------AGTATGGAAACTACAGGA---AAGA 1363
consensus_12540#1 AGCCCACATGATAAATTTAAAGGACTTGTTTGGATAATATGAAAGATTAAGGACTAAAAT 571
consensus_12540#2 GGCTGATGATTTGCACTCCGTTG--TATCATATCTTTGTAAGGAAAAGTATGATGTAACA 558
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 GGCTGATGATTTGCACTCCGTTG--TATCATATCTTTGTAAGGAAAAGTATGATGTAACA 1421
consensus_12540#1 GACCCATGAGCGAAATTTTAGAGACCATATTAGCTATTCTCTCAAAATAATAAGAAAACT 631
consensus_12540#2 GCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGAT 618
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 GCAATTGTTGGCCATAGTAAAGGGGGAGATGTAGTAACTCTATATGCTTCTATTTATGAT 1481
consensus_12540#1 TCTCTCAATAGCCGCC-TAAAGATAAAGTTATCACTTATCTATGGTTGACAAGTACCACC 690
consensus_12540#2 GATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGAA 678
consensus_12540#3 ----------------------------------------------------TGAAAGAA 8
consensus_12540#0 GATGTACGCTTGGTTATTAATGTATCTGGTAGATTTGACTTAGAGAAAGGCATTGAAGGA 1541
consensus_12540#1 ATTGGCTTGGCGGCTTTCAAGCTATATA-CATTTCTTGTCTATCTCGAACCAGAAAATAG 749
**
consensus_12540#2 CGTATAGGGGA---AGGATCAATTGATAGAATAAATAAAGAAGGCT-ACCTTGATGTCAA 734
consensus_12540#3 CGTATAGGGGA---AGGGACCATTGATAGAATAAATAAAGAAGGCT-ACCTTGATGTCAA 64
consensus_12540#0 CGTATAGGGGA---AGGATCAATTGATAGAATAAATAAAGAAGGCT-ACCTTGATGTCAA 1597
consensus_12540#1 AATATCAGAAATCAGCAACCGATTATTGTGCCGATCTAATTTTTCTCACGTCATTGCCAG 809
*** * * * *** * * ** ** ** * ** **
consensus_12540#2 GGATAA-------ATCA-GGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAG 786
consensus_12540#3 GGATAA-------ATCACGGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAG 117
consensus_12540#0 GGATAA-------ATCA-GGAAATGTACAGTACAGGGTAACTAAAGAGAGTTTGATGGAG 1649
consensus_12540#1 TGGCAATCACCAAACCAAAACGAAAGATAACATCAGATAGTAAACTGAGAGTCGCTCGGC 869
* ** * ** * * * * * ** ** * * * *
consensus_12540#2 CGG--CTCAACACCGATATACGTGCTGTAGGCA---TGTCCATTACCAAGGAATGCAGGT 841
consensus_12540#3 CGG--CTCAGCACCGATATACGTGCTGTAAGCA---TGTCCCTTACCAAGGAATGCAGGT 172
consensus_12540#0 CGG--CTCAACACCGATATACGTGCTGTAAGCA---TGTCCATTACCAAGGAATGCAGGT 1704
consensus_12540#1 TAGATCTTGCCATCAACACAACCATCTTGGCCGATCTAGCGAGTACAGTGCGATGTAGGA 929
* ** ** * * * * * * * * *** * *** ***
consensus_12540#2 T-CTTCACAGTTC-ACGGTTC--AGCA--GATGAGACTATACCTGTGGAAGACGCCTATA 895
consensus_12540#3 T-CTTCACAGTTC-ACGGTTC--A-CA--GATGAGACTATACCTGTGGAAGACGCCTATG 225
consensus_12540#0 T-CTTCACAGTTC-ACGGTTC--AGCA--GATGAGACTATACCTGTGGAAGACGCCTATA 1758
consensus_12540#1 TGCACCACCCTCCTACCATTCCCATCATTGACGCGGCCGCGCTCAAGCAGGTCACCACCA 989
* * *** * * ** *** * ** ** * * * * * * * * **
consensus_12540#2 AGTTTGCGAAG--CATATACCGAATCACAAGC---TGCAAGTTA--TTGAGGGAGCAAAT 948
consensus_12540#3 AGTTTGCGAAG--CATATACCGAATCACAAGC---TGCAAGTTA--TTGAGGGA-CAAAT 277
consensus_12540#0 AGTTTGCGAAG--CATATACCGAATCACAAGC---TGCAAGTTA--TTGAGGGAGCAAAT 1811
consensus_12540#1 AATGCGCGACCTTCATATGCAGCAACACCACTCCATGCGTCTTAACCTTGGTGGCCAGGA 1049
* * **** ***** * * * *** * *** *** * * * **
consensus_12540#2 CATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCT 1008
consensus_12540#3 CATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCT 337
consensus_12540#0 CATAACTACACCGCGCATCGCGAAGAATTGGCTGATGCTGTAGTGGATTTCATCACATCT 1871
consensus_12540#1 CAAGATGATACTAC-TATGGTAAAACGATGA-TAAGACAGTGGCACCACGGGCCACGGCT 1107
** * * ** * ** * ** ** * * * ** * *** **
consensus_12540#2 AATTAGGTATAGAAAACCTATCTGTTGAATTATTCATCCTGGTCTCTATGGGCCC---TT 1065
consensus_12540#3 AATTAGGTATAAATCTTTGGGGAATCAAATAACAGAAACAGGTGTATCCGTGTAT---AT 394
consensus_12540#0 AATTAG------------------------------------------------------ 1877
consensus_12540#1 GCCTAGCTGACCAAATCAAAGGCAATTTTCTGCCGGAACCAGCTTCAATGGCGTCGGGAT 1167
***
consensus_12540#2 CAGAAATTACTCTTTTCTCCACAGTTCTGCATGTC---TGAGAGACTGAGACAACCTCAT 1122
consensus_12540#3 TAGTG--TACCATTT----CGTAGGTCCATAT------TGAATTACTGATATGAATTGTT 442
consensus_12540#0 ------------------------TTCTGCATGTC---TGAGAGACTGAGACAACCTCAT 1910
consensus_12540#1 CAGCCGGTGGCGAATCGATGGATGGACGCCATCTTCATCGGATGATTGCCATCACCGCCA 1227
* ** * * ** * *
consensus_12540#2 TCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTG 1182
consensus_12540#3 TCTTGC-AGATGTCTGTGTACC-TACAGGATTCCTGTAAA-------TATCAACTCTATA 493
consensus_12540#0 TCACGAGAGATGACTTCTTGTGATGGAGGATCCTTGTGTAGGTTTTGTGCCATTTCTCTG 1970
consensus_12540#1 CCGCGCCACCGTCGTCGCCATGGGATCTGATCGATCGATCCGAGATATGGAGAAACTGTG 1287
* * * * *** * * ** *
consensus_12540#2 CCTTTTCTC------CTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGC 1236
consensus_12540#3 G---TAGAA------CCATATAAAATTTCAGGTTTGTACTAAAAAAAA------------ 532
consensus_12540#0 CCTTTTCTC------CTCTAAACAGGTATAAATCTTTGGGGAATCAAATAAGCAGAAAGC 2024
consensus_12540#1 ATCCTTCACGCGAAGCTCAATCGCGTTGTGATCACGTGATCCACCGGA-GCGCCCAACGC 1346
* * * * * * *
consensus_12540#2 AGGTGTATCCGTGTAT----ATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGAT 1292
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 AGGTGTATCCGTGTAT----ATTAGTGTACCATTTCGTAGGTCCATATTGAATTACTGAT 2080
consensus_12540#1 TGGTGTAAACGATGGTCGCCACAGATGGATGATCTAGTAAAATTCTTTCACAGTGCGTAC 1406
consensus_12540#2 ATGAATTGTTTCTTGCAAAAAA-------------------------------------- 1314
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 ATGAATTGTTTCTTGCAGATGTCTGTGTACCTACAGGATTCCTGTAAATATCAAACTCTA 2140
consensus_12540#1 ATGTGGTGTTCTGCTTCCATACGTCTTTTTTTTTTTTTTTTTTTTTTTTT---------- 1456
consensus_12540#2 ------------------------------------------------------------
consensus_12540#3 ------------------------------------------------------------
consensus_12540#0 TAGTAGAACCGTATAAAATTTCAGGTTTTTACTTTGTACTAAGAATTCTGCGTGCAAAAG 2200
consensus_12540#1 ------------------------------------------------------------
consensus_12540#2 ------------------------------
consensus_12540#3 ------------------------------
consensus_12540#0 GTTTCAGAGCACAACTGCTGCTGCTTCCTG 2230
consensus_12540#1 ------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||