Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12544 cluster # 12544       Sequences # 10       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12544#0 length = 2157 sequences # 2  
consensus_12544#1 length = 912 sequences # 1  
consensus_12544#2 length = 832 sequences # 2  
consensus_12544#3 length = 574 sequences # 3  
consensus_12544#4 length = 536 sequences # 1  
consensus_12544#5 length = 182 sequences # 1  

consensusID : consensus_12544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2157
fasta sequence
                              [GCGCCTCGATCAGAAATAAGTTCACACAGCCTAATAAACCCCTCGAGAAGACAAGTGTAATCGCCAGGGGAAGCGCGCGAGATGGACGCAGCTGGCGTCGCCGCAAAGCCGTCGCTGTCGAGGAAGCCCTCGCCGTCGTTCCGCCTCCGGAACGGCAGCCTGAACGCGCTGCGGCTGCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACGCTCGACGAGATGGCGTCCGCGCTCGACGCGCTCGGCCTCGGCGCCGACCGCGCGGGGCTGGAGGCCACGGTCGGGGGCTACATCCCCGCGGGCGCCGCGGGGCTCCGCTTCGGCGACTTCGAGGCACTCCACCGCGCGCTCGGCGACGCGCTCTTCGGCCCCGTCGAGGAGGAGGAGCCCGGGAAGCAAGGGGAGGACGACGACGAGGGCGACATGAAGGAGGCGTTCCGGGTGTTCGACGAGGACGGCGACGGCTTCATCTCCGCCGCCGAGCTGCAGGCCGTGCTCAAGAAGCTCGGCCTCCCCGAGGCCCGGAACCTCGCCACGGTGCAGGAGATGATCTGCAACGTCGACCGCGACTGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGAGGATCACCGTGTGGGGCGCTTGACGGCGGCGAGCGAGGCCGCCGTCCTTCGTCCTCTCCCCGTGTGTCATGTATGTATCCACGCATTGCAACGTGTCTCTGCTCGGCAAATTTTTCTTGATCGTCCTGTGGAATCCTCCTGTTCTTGACTTGATCTGCTTAATTGTAGCATTGAGAATTTTCTGTGACCACCATGAAATGCGACATTATAGAAAAAAAATGGCATGCGAAGATTTCATTGGTATTTACTCCGTTACTTAAACATTGTTTTTGTTAATTATTCCTATCCACATATATCTAAGAGGAAAGTTGACCAGCTTCACCACAAGTTTTTCTTTCTTCAATTTCGTGGTGCTTTCGTGCACATGCCTAGGCCTATCATTTCCCTTTGTGCGTTGACGTATTCAGCCGTCATTTGAATAAGCGTTTGCTTGAAGAAATGGCAGAGAAAGAAGAAATGGGCTTGACATGATTTTCTATTGAAAATATTGTGGACAGGTTTAAAACATAGAAATTTCGTAGAAAACCGTTCAATATTCTAACCAAGGGGAAAATCATTAGCACTAAACAGGGTTATAGAGAACATGGGAAGTTTGTTCTATGATCCTACTACAGGAATATAATATCTATGGAGGCCTTTGGAACAAAGGATTAGACATTACAGATTACTTTAAAGTTATTATCTAACAGACTAATCCATAGTAATTTTGGAAAAAAAAAATCCATGAGGTCAACTTCATGTTTTCATCCCCTTTCTTGAAAATCAACATCCCCCCCCTCCCCCTATTACATCCAAACCTCTCTTTTAAAGTACTCGTGTTTTTCCATCAGAATTTGAGAAGGCATTTCTCCTTGTTTTCCTCCTTTCTATTTTGAGTTCCCTTCATTCCAAAAGCTTAATTGTTTGAAATCTAATAGATAACTCTTTTAAATCCAAGGAGGCATAGAGTTCTCACATGGACCATTATCTTCTTGTTCTTTCATTAGTACAGTAGTGTACGTTTAAGCACATGAAGATTGCTAGGCCAACCTAACGTCTGCTTATGAATACCTACCACATGTTAATAGGAACTTGCATCAGCATGTTTGCATGCTCTACACTTTATATGATTACGCATTGCTTTCTTATTATACATGTTTGGCTTTAAACCAAGTTTTTATATGCCTTCAAGTAATGTACTCCATTGATTTGCAGATTCTGAAGCATCTGAAGATTGATCTAGGAGCTATAACATTACCCTTGGATTGTTTCAGTCAATACTGATTCAGTGTTTGTTGTATGTTGGTCATAATGCAGGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCATTGTGTTCCTCCTAATCCAATAAGCTTTCTGTATGTAAGAAGAACAATGTGACCTATATCAGAACAATGGTCTTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAATGTTTTTT]

[+] EMBL AK109470             [GCGCCTCGATCAGAAATAAGTTCACACAGCCTAATAAACCCCTCGAGAAGACAAGTGTAATCGCCAGGGGAAGCGCGCGAGATGGACGCAGCTGGCGTCGCCGCAAAGCCGTCGCTGTCGAGGAAGCCCTCGCCGTCGTTCCGCCTCCGGAACGGCAGCCTGAACGCGCTGCGGCTGCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACGCTCGACGAGATGGCGTCCGCGCTCGACGCGCTCGGCCTCGGCGCCGACCGCGCGGGGCTGGAGGCCACGGTCGGGGGCTACATCCCCGCGGGCGCCGCGGGGCTCCGCTTCGGCGACTTCGAGGCACTCCACCGCGCGCTCGGCGACGCGCTCTTCGGCCCCGTCGAGGAGGAGGAGCCCGGGAAGCAAGGGGAGGACGACGACGAGGGCGACATGAAGGAGGCGTTCCGGGTGTTCGACGAGGACGGCGACGGCTTCATCTCCGCCGCCGAGCTGCAGGCCGTGCTCAAGAAGCTCGGCCTCCCCGAGGCCCGGAACCTCGCCACGGTGCAGGAGATGATCTGCAACGTCGACCGCGACTGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGAGGATCACCGTGTGGGGCGCTTGACGGCGGCGAGCGAGGCCGCCGTCCTTCGTCCTCTCCCCGTGTGTCATGTATGTATCCACGCATTGCAACGTGTCTCTGCTCGGCAAATTTTTCTTGATCGTCCTGTGGAATCCTCCTGTTCTTGACTTGATCTGCTTAATTGTAGCATTGAGAATTTTCTGTGACCACCATGAAATGCGACATTATAGAAAAAAAATGGCATGCGAAGATTTCATTGGTATTTACTCCGTTACTTAAACATTGTTTTTGTTAATTATTCCTATCCACATATATCTAAGAGGAAAGTTGACCAGCTTCACCACAAGTTTTTCTTTCTTCAATTTCGTGGTGCTTTCGTGCACATGCCTAGGCCTATCATTTCCCTTTGTGCGTTGACGTATTCAGCCGTCATTTGAATAAGCGTTTGCTTGAAGAAATGGCAGAGAAAGAAGAAATGGGCTTGACATGATTTTCTATTGAAAATATTGTGGACAGGTTTAAAACATAGAAATTTCGTAGAAAACCGTTCAATATTCTAACCAAGGGGAAAATCATTAGCACTAAACAGGGTTATAGAGAACATGGGAAGTTTGTTCTATGATCCTACTACAGGAATATAATATCTATGGAGGCCTTTGGAACAAAGGATTAGACATTACAGATTACTTTAAAGTTATTATCTAACAGACTAATCCATAGTAATTTTGGAAAAAAAAAATCCATGAGGTCAACTTCATGTTTTCATCCCCTTTCTTGAAAATCAACATCCCCCCCCTCCCCCTATTACATCCAAACCTCTCTTTTAAAGTACTCGTGTTTTTCCATCAGAATTTGAGAAGGCATTTCTCCTTGTTTTCCTCCTTTCTATTTTGAGTTCCCTTCATTCCAAAAGCTTAATTGTTTGAAATCTAATAGATAACTCTTTTAAATCCAAGGAGGCATAGAGTTCTCACATGGACCATTATCTTCTTGTTCTTTCATTAGTACAGTAGTGTACGTTTAAGCACATGAAGATTGCTAGGCCAACCTAACGTCTGCTTATGAATACCTACCACATGTTAATAGGAACTTGCATCAGCATGTTTGCATGCTCTACACTTTATATGATTACGCATTGCTTTCTTATTATACATGTTTGGCTTTAAACCAAGTTTTTATATGCCTTCAAGTAATGTACTCCATTGATTTGCAGATTCTGAAGCATCTGAAGATTGATCTAGGAGCTATAACATTACCCTTGGATTGTTTCAGTCAATACTGATTCAGTGTTTGTTGTATGTTGGTCATAATGCAGGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCATTGTGTTCCTCCTAATCCAATAAGCTTTCTGTATGTAAGAAGAACAATGTGACCTATATCAGAACAATGGTCTTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAATGTTTTTT]
[+] EMBL AK109541             [GCGCCTCGATCAGAAATAAGTTCACACAGCCTAATAAACCCCTCGAGAAGACAAGTGTAATCGCCAGGGGAAGCGCGCGAGATGGACGCAGCTGGCGTCGCCGCAAAGCCGTCGCTGTCGAGGAAGCCCTCGCCGTCGTTCCGCCTCCGGAACGGCAGCCTGAACGCGCTGCGGCTGCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACGCTCGACGAGATGGCGTCCGCGCTCGACGCGCTCGGCCTCGGCGCCGACCGCGCGGGGCTGGAGGCCACGGTCGGGGGCTACATCCCCGCGGGCGCCGCGGGGCTCCGCTTCGGCGACTTCGAGGCACTCCACCGCGCGCTCGGCGACGCGCTCTTCGGCCCCGTCGAGGAGGAGGAGCCCGGGAAGCAAGGGGAGGACGACGACGAGGGCGACATGAAGGAGGCGTTCCGGGTGTTCGACGAGGACGGCGACGGCTTCATCTCCGCCGCCGAGCTGCAGGCCGTGCTCAAGAAGCTCGGCCTCCCCGAGGCCCGGAACCTCGCCACGGTGCAGGAGATGATCTGCAACGTCGACCGCGACTGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTGTGGGGCGCTTGACGGCGGCGAGCGAGGCCGCCGTCCTTCGTCCTCTCCCCGTGTGTCATGTATGTATCCACGCATTGCAGCGTGTCTCTGCTCGGCAAATTTTTCTTGATCGTCCTGTGGAATCCTCCTGTTCTTGACTTGATCTGCTTAATTGTAGCATTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_12544#0 GCGCCTCGATCAGAAATAAGTTCACACAGCCTAATAAACCCCTCGAGAAGACAAGTGTAA TCGCCAGGGGAAGCGCGCGAGATGGACGCAGCTGGCGTCGCCGCAAAGCCGTCGCTGTCG AGGAAGCCCTCGCCGTCGTTCCGCCTCCGGAACGGCAGCCTGAACGCGCTGCGGCTGCGC AGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACGCTCGACGAGATGGCG TCCGCGCTCGACGCGCTCGGCCTCGGCGCCGACCGCGCGGGGCTGGAGGCCACGGTCGGG GGCTACATCCCCGCGGGCGCCGCGGGGCTCCGCTTCGGCGACTTCGAGGCACTCCACCGC GCGCTCGGCGACGCGCTCTTCGGCCCCGTCGAGGAGGAGGAGCCCGGGAAGCAAGGGGAG GACGACGACGAGGGCGACATGAAGGAGGCGTTCCGGGTGTTCGACGAGGACGGCGACGGC TTCATCTCCGCCGCCGAGCTGCAGGCCGTGCTCAAGAAGCTCGGCCTCCCCGAGGCCCGG AACCTCGCCACGGTGCAGGAGATGATCTGCAACGTCGACCGCGACTGCGACGGCCGCGTC GACTTCGGCGAGTTCAAGTGCATGATGCAGAGGATCACCGTGTGGGGCGCTTGACGGCGG CGAGCGAGGCCGCCGTCCTTCGTCCTCTCCCCGTGTGTCATGTATGTATCCACGCATTGC AACGTGTCTCTGCTCGGCAAATTTTTCTTGATCGTCCTGTGGAATCCTCCTGTTCTTGAC TTGATCTGCTTAATTGTAGCATTGAGAATTTTCTGTGACCACCATGAAATGCGACATTAT AGAAAAAAAATGGCATGCGAAGATTTCATTGGTATTTACTCCGTTACTTAAACATTGTTT TTGTTAATTATTCCTATCCACATATATCTAAGAGGAAAGTTGACCAGCTTCACCACAAGT TTTTCTTTCTTCAATTTCGTGGTGCTTTCGTGCACATGCCTAGGCCTATCATTTCCCTTT GTGCGTTGACGTATTCAGCCGTCATTTGAATAAGCGTTTGCTTGAAGAAATGGCAGAGAA AGAAGAAATGGGCTTGACATGATTTTCTATTGAAAATATTGTGGACAGGTTTAAAACATA GAAATTTCGTAGAAAACCGTTCAATATTCTAACCAAGGGGAAAATCATTAGCACTAAACA GGGTTATAGAGAACATGGGAAGTTTGTTCTATGATCCTACTACAGGAATATAATATCTAT GGAGGCCTTTGGAACAAAGGATTAGACATTACAGATTACTTTAAAGTTATTATCTAACAG ACTAATCCATAGTAATTTTGGAAAAAAAAAATCCATGAGGTCAACTTCATGTTTTCATCC CCTTTCTTGAAAATCAACATCCCCCCCCTCCCCCTATTACATCCAAACCTCTCTTTTAAA GTACTCGTGTTTTTCCATCAGAATTTGAGAAGGCATTTCTCCTTGTTTTCCTCCTTTCTA TTTTGAGTTCCCTTCATTCCAAAAGCTTAATTGTTTGAAATCTAATAGATAACTCTTTTA AATCCAAGGAGGCATAGAGTTCTCACATGGACCATTATCTTCTTGTTCTTTCATTAGTAC AGTAGTGTACGTTTAAGCACATGAAGATTGCTAGGCCAACCTAACGTCTGCTTATGAATA CCTACCACATGTTAATAGGAACTTGCATCAGCATGTTTGCATGCTCTACACTTTATATGA TTACGCATTGCTTTCTTATTATACATGTTTGGCTTTAAACCAAGTTTTTATATGCCTTCA AGTAATGTACTCCATTGATTTGCAGATTCTGAAGCATCTGAAGATTGATCTAGGAGCTAT AACATTACCCTTGGATTGTTTCAGTCAATACTGATTCAGTGTTTGTTGTATGTTGGTCAT AATGCAGGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTT CACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCATTGTGTTCCTCC TAATCCAATAAGCTTTCTGTATGTAAGAAGAACAATGTGACCTATATCAGAACAATGGTC TTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAATGTTTTTT



consensusID : consensus_12544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 912
fasta sequence
                              [GAGAATCCGCGCGCGCGAAAGGGAAGGCCTGATCGGATTCGAGCTGTGCCGGCGAGGAGAGGAGATATGGACGCGAAGCAGAGCGTGGCGGCGGCGAAGCCGTCGCTGGCGAAGAAGACGGCGTCGGCGTCGTTCCGGCTGAGGAACGGCAGCCTGAACGCGGTGCGGCTGCGCCGCGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGCTGGCGCAGGCGCTCGACGCGCTGGGCCTCGTCGCCGACCGCGACGGCCTCGCCGCCACCGTCTCCGCCTACGTCCCCGAGGGCGCCGCGGGCCTCCGCTTCGAGGACTTCGACGCGCTCCACCGCGCGCTCGGCGACGCCCTCTTCGGCTCGCTCGACGGCGCCGCCGCCGCCGGCGAGCCCGGCGGCGGCGGCGGCGACGAGGAGGAGGAGATGCGGGAGGCGTTCAAGGTGTTCGACGTCGACGGCGACGGGTTCATCTCGGCGTCGGAGCTCCAGGAGGTGCTCAAGAAGCTCGGCCTCCCGGAGGCCGGCAGCCTCGCCACCGTGCGGGAGATGATCTGCAACGTCGACCGCAACAGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTCCATGATGCAGGGCATCACCGTCTGGGGCCCCTGATCTCCACCAATCCCTTCAAACATCTTTTGAATTCCATCCAAATTTCAACCAAACACGCACACGCGCAGTCCAAATTGAATCAAACTGAACATCACTAGGTTAACTCAATATATTTATCTCATGCAATTACATCACTGTATGTACATGTGACAAAGCAGGGCCTGAGCTTTGTTGCTATGGCCTGTTTTGTGTTTAAAAAAATTTTAAATTCTACTCGAACAGGATTCTTTTCAAGTGTTTCTACGGTAATTGAAC]

[+] EMBL AK071435             [GAGAATCCGCGCGCGCGAAAGGGAAGGCCTGATCGGATTCGAGCTGTGCCGGCGAGGAGAGGAGATATGGACGCGAAGCAGAGCGTGGCGGCGGCGAAGCCGTCGCTGGCGAAGAAGACGGCGTCGGCGTCGTTCCGGCTGAGGAACGGCAGCCTGAACGCGGTGCGGCTGCGCCGCGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGCTGGCGCAGGCGCTCGACGCGCTGGGCCTCGTCGCCGACCGCGACGGCCTCGCCGCCACCGTCTCCGCCTACGTCCCCGAGGGCGCCGCGGGCCTCCGCTTCGAGGACTTCGACGCGCTCCACCGCGCGCTCGGCGACGCCCTCTTCGGCTCGCTCGACGGCGCCGCCGCCGCCGGCGAGCCCGGCGGCGGCGGCGGCGACGAGGAGGAGGAGATGCGGGAGGCGTTCAAGGTGTTCGACGTCGACGGCGACGGGTTCATCTCGGCGTCGGAGCTCCAGGAGGTGCTCAAGAAGCTCGGCCTCCCGGAGGCCGGCAGCCTCGCCACCGTGCGGGAGATGATCTGCAACGTCGACCGCAACAGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTCCATGATGCAGGGCATCACCGTCTGGGGCCCCTGATCTCCACCAATCCCTTCAAACATCTTTTGAATTCCATCCAAATTTCAACCAAACACGCACACGCGCAGTCCAAATTGAATCAAACTGAACATCACTAGGTTAACTCAATATATTTATCTCATGCAATTACATCACTGTATGTACATGTGACAAAGCAGGGCCTGAGCTTTGTTGCTATGGCCTGTTTTGTGTTTAAAAAAATTTTAAATTCTACTCGAACAGGATTCTTTTCAAGTGTTTCTACGGTAATTGAAC]


>consensus_12544#1 GAGAATCCGCGCGCGCGAAAGGGAAGGCCTGATCGGATTCGAGCTGTGCCGGCGAGGAGA GGAGATATGGACGCGAAGCAGAGCGTGGCGGCGGCGAAGCCGTCGCTGGCGAAGAAGACG GCGTCGGCGTCGTTCCGGCTGAGGAACGGCAGCCTGAACGCGGTGCGGCTGCGCCGCGTG TTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGCTGGCGCAGGCG CTCGACGCGCTGGGCCTCGTCGCCGACCGCGACGGCCTCGCCGCCACCGTCTCCGCCTAC GTCCCCGAGGGCGCCGCGGGCCTCCGCTTCGAGGACTTCGACGCGCTCCACCGCGCGCTC GGCGACGCCCTCTTCGGCTCGCTCGACGGCGCCGCCGCCGCCGGCGAGCCCGGCGGCGGC GGCGGCGACGAGGAGGAGGAGATGCGGGAGGCGTTCAAGGTGTTCGACGTCGACGGCGAC GGGTTCATCTCGGCGTCGGAGCTCCAGGAGGTGCTCAAGAAGCTCGGCCTCCCGGAGGCC GGCAGCCTCGCCACCGTGCGGGAGATGATCTGCAACGTCGACCGCAACAGCGACGGCCGC GTCGACTTCGGCGAGTTCAAGTCCATGATGCAGGGCATCACCGTCTGGGGCCCCTGATCT CCACCAATCCCTTCAAACATCTTTTGAATTCCATCCAAATTTCAACCAAACACGCACACG CGCAGTCCAAATTGAATCAAACTGAACATCACTAGGTTAACTCAATATATTTATCTCATG CAATTACATCACTGTATGTACATGTGACAAAGCAGGGCCTGAGCTTTGTTGCTATGGCCT GTTTTGTGTTTAAAAAAATTTTAAATTCTACTCGAACAGGATTCTTTTCAAGTGTTTCTA CGGTAATTGAAC



consensusID : consensus_12544#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 832
fasta sequence
                              [CTTCCGAAATAGAGAAATTGCCACGGATCGAGGGCGACCGATAATGGAAGGCGAGCAGCAGCAGCAGCAGCAGCAGAGCGTCGCGGCGGTGAGGCCGTCGCTGGGGAAGGCGCCGTCGCCGTCGTTCCGGCTCCGGAACGGCAGCCTCAACGCGGTGCGCCTCCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGCTGGCGCAGGCGCTGGACGCGCTCGGCCTCGAGGCCGACCGCGCCGGCCTGGCCGCCACCGTCGGCGCCCACGTCCCCGACGGCGCGGCGGGGCTCCGGTTCGAGGACTTCGAGTCCCTCCACCGCGCCCTCGGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACGGCGGCGGCGGCGGCGGCGGCGACGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGACGTGGATGGCGACGGGTTCATCTCCGCCTCCGAGCTGCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCGGCAGCCTGGCCAACGTGCGGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTCTTTGGCGCCTGACCACTTCTTCCATCCAGGGTAGCCATGGCATCCGCTCACCCTCACCTAGTCAACGTTCTTATCGGCGGGGTTACAAGGAAGGACAACGTGTTAATCATCCATTAGCAGCTGGTCTTTGCATCGTGTGATGACCATCATTTCTCATTGAACGAGTGACCAACTCGATGATTCTGTCAGTCCCAGTGAGCGTGATTG]

[+] EMBL AK062850             [CTTCCGAAATAGAGAAATTGCCACGGATCGAGGGCGACCGATAATGGAAGGCGAGCAGCAGCAGCAGCAGCAGCAGAGCGTCGCGGCGGTGAGGCCGTCGCTGGGGAAGGCGCCGTCGCCGTCGTTCCGGCTCCGGAACGGCAGCCTCAACGCGGTGCGCCTCCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGCTGGCGCAGGCGCTGGACGCGCTCGGCCTCGAGGCCGACCGCGCCGGCCTGGCCGCCACCGTCGGCGCCCACGTCCCCGACGGCGCGGCGGGGCTCCGGTTCGAGGACTTCGAGTCCCTCCACCGCGCCCTCGGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACGGCGGCGGCGGCGGCGGCGGCGACGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGACGTGGATGGCGACGGGTTCATCTCCGCCTCCGAGCTGCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCGGCAGCCTGGCCAACGTGCGGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTCTTTGGCGCCTGACCACTTCTTCCATCCAGGGTAGCCATGGCATCCGCTCACCCTCACCTAGTCAACGTTCTTATCGGCGGGGTTACAAGGAAGGACAACGTGTTAATCATCCATTAGCAGCTGGTCTTTGCATCGTGTGATGACCATCATTTCTCATTGAACGAGTGACCAACTCGATGATTCTGTCAGTCCCAGTGAGCGTGATTG]
[+] EMBL CA755081             [            AGAAATTGCCACGGATCGAGGGCGACCGATAATGGAAGGCGAGCAGCAGCAGCAGCAGCAGCAGAGCGTCGCGGCGGTGAGGCCGTCGCTGGGGAAGGCGCCGTCGCCGTCGTTCCGGCTCCGGAACGGCAGCCTCAACGCGGTGCGCCTCCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCAAGATCACCGTGGACGAGCTGGCGCAGGCGCTGGACGCGCTCGGCCTCGAGGCCGACCGCGCCGGCCTGGCCGCCACCGTCGGCGCCCACGTCCCCGACGGCGCGGCGGGGCTCCGGTTCGAGGACTTCGAGTCCCTCCACCGCGCCCTCGGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACGGCGGCGGCGGCGGCGGCGGCGACGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGACGTGGATGGCGACGGGTTCATCTCCGCCTCCGAGCTGCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCGGCAGCCTGGCCCACGTGCGGGAGATGATCTGCNACGTCGACCGCGACAGCGACGGCCGCGTCGACNTCGGCGAGTTC AGTGCATGATGCA                                                                                                                                                                                                                            ]


>consensus_12544#2 CTTCCGAAATAGAGAAATTGCCACGGATCGAGGGCGACCGATAATGGAAGGCGAGCAGCA GCAGCAGCAGCAGCAGAGCGTCGCGGCGGTGAGGCCGTCGCTGGGGAAGGCGCCGTCGCC GTCGTTCCGGCTCCGGAACGGCAGCCTCAACGCGGTGCGCCTCCGCAGGGTGTTCGACCT GTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGCTGGCGCAGGCGCTGGACGC GCTCGGCCTCGAGGCCGACCGCGCCGGCCTGGCCGCCACCGTCGGCGCCCACGTCCCCGA CGGCGCGGCGGGGCTCCGGTTCGAGGACTTCGAGTCCCTCCACCGCGCCCTCGGCGACGC GCTCTTCGGCTCGCTGGACGTCCCCGAGGACGGCGGCGGCGGCGGCGGCGGCGACGAGGA GATGAAGGAGGCGTTCAAGGTGTTCGACGTGGATGGCGACGGGTTCATCTCCGCCTCCGA GCTGCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCGGCAGCCTGGCCAACGTGCG GGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGTCGACTTCGGCGAGTTCAA GTGCATGATGCAGGGGATCACCGTCTTTGGCGCCTGACCACTTCTTCCATCCAGGGTAGC CATGGCATCCGCTCACCCTCACCTAGTCAACGTTCTTATCGGCGGGGTTACAAGGAAGGA CAACGTGTTAATCATCCATTAGCAGCTGGTCTTTGCATCGTGTGATGACCATCATTTCTC ATTGAACGAGTGACCAACTCGATGATTCTGTCAGTCCCAGTGAGCGTGATTG



consensusID : consensus_12544#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 574
fasta sequence
                              [TTCCGGGTGTTCGACGAGACGCGACGGCATCATCTCCGCCGCCGAGCTGCAGCCGTGCTCAAGAAGCTCGGCCTCCCCGAGCCCGGGAACCTCGCCACGGTGGCAGGGAGATGATCTGCAACGTCGACCGCGACTGCGAC-GCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTGTGGGGCG-CTTGACGGCGGCGA-GCGAGGCCGGC--GTCC-TTC-GT-CCTCTCCCC--GTGTGTCA-TATTCTGAAGCATCTGAAGATTGATCTAGGAGCTATAACATTACCCTTGGA-TTGTTTCAGTCAATACTGATTCAGTGGTTGTTGTATGTTGGTCATAATGCA-GGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCA-TTGTGTTCCTCCTAATCC-ATAAGCTTTCTGTATGTAAGAAGAACATGTGACCTATATCAGA--ACATGGTCTTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAAAAAA]

[+] EMBL BI801978             [TTCCGGGTGTTCGACGAGACGCGACGGCATCATCTCCGCCGCCGAGCTGCAGCCGTGCTCAAGAAGCTCGGCCTCCCCGAGCCCGGGAACCTCGCCACGGTGGCAGGGAGATGATCTGCAACGTCGACCGCGACTGCGAC GCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTGTGGGGCG CTTGACGGCGGCGA GCGAGGCCGGC  GTCCATTC GT CCTCTCCCC  GTGTGTCA TATTCTGAAGCATCTGAAGATTGATCTAGGAGCTATAACATTACCCTTGGA TTGTTTCAGTCAATACTGATTCAGTGGTTGTTGTATGTTGGTCATAATGCACGGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCACTTGTGTTCCTCCTAATCC ATAAGCTTTCTGTATGTAAGAAGAACATGTGACCTATATCAGA  ACATGGTCTTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAAAAAA]
[+] EMBL BI802169             [                                                                                                                              ACCGCGACTGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTGTGGGGCG CTTGACGGCGGCGA GCGAGGCCGGC  GTCC TTC GT CCTCTCCCC  GTGTGTCA TATTCTGAAGCATCTGAAGATTGATCTAGGAGCTATAACATTACCCTTGGA TTGTTTCAGTCAATACTGATTCAGTGGTTGTTGTATGTTGGTCATAATGCA GGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCA TTGTGTTCCTCCTAATCCAATAAGCTTTCTGTATGTAAGAAGAACATGTGACCTATATCAGA  ACATGGTCTTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTAaaaa         ]
[+] EMBL BI802672             [                                                                                                                                                                                      ccacCCGT TGGGGCGCCTTGACGCCGGCGAGGCGA GCCGGCCGGTCC TTCGGTCCCTCTCCCCCGGTGTGTCATTATTCTGAAGCATCTGAAGATTGATCTAGGACCTATAACATTACCCTTGGATTTGTTTCAGTCAATACTGATTCAGTGGTTGTTGTATGTTGGTCATAATGCA GGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCA TTGTGTTCCTCCTAATCC ATAAGCTTTCTGTATGTAAGAAGAACATGTGACCTATATCAGAACACATGGTCTTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAAAAA ]


>consensus_12544#3 TTCCGGGTGTTCGACGAGACGCGACGGCATCATCTCCGCCGCCGAGCTGCAGCCGTGCTC AAGAAGCTCGGCCTCCCCGAGCCCGGGAACCTCGCCACGGTGGCAGGGAGATGATCTGCA ACGTCGACCGCGACTGCGACGCCGCGTCGACTTCGGCGAGTTCAAGTGCATGATGCAGGG GATCACCGTGTGGGGCGCTTGACGGCGGCGAGCGAGGCCGGCGTCCTTCGTCCTCTCCCC GTGTGTCATATTCTGAAGCATCTGAAGATTGATCTAGGAGCTATAACATTACCCTTGGAT TGTTTCAGTCAATACTGATTCAGTGGTTGTTGTATGTTGGTCATAATGCAGGTAATGATG ACTGTAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATG TAGCCAGATAGGTCTTGTGCGCATCTGTGTCATTGTGTTCCTCCTAATCCATAAGCTTTC TGTATGTAAGAAGAACATGTGACCTATATCAGAACATGGTCTTTTTGTTAATTAAAATTG TAATAAGCGTGTGCTTGGTTACTGGTGGAAAAAA



consensusID : consensus_12544#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence
                              [CACCGTCGGCGCCCACGTCCCCGACGGCGCGCGGGCTCCGGTTCGAGGACTTCGAGTCCCTCCACCGCGCCCTCGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACGCGGCGCGGCGGCGGCGGCGACGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGTACGTGGATGGCGACGGGTTCATCTCCGCCTCCGAGCTCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCGCAGCCTGGCCAACGTGCGGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGTCTGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTCTTTGGCGCCTGACCACTTCTTCCATCCAGGGTAGCCATGGCATCCGCTCACCCTCACCTAGCTTCTGAAGTTCTGAAAACAAAGACGTAAGAGAAGGCACTACCATACTAGATCGCAGCCAAGATCAGTAGGTTCGGTGTAATCTTTTTAAGCTTAAGGCCAAGCCATTCCACTTTTGTTGCAAAAAAAAAA]

[+] EMBL BI806032             [CACCGTCGGCGCCCACGTCCCCGACGGCGCGCGGGCTCCGGTTCGAGGACTTCGAGTCCCTCCACCGCGCCCTCGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACGCGGCGCGGCGGCGGCGGCGACGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGTACGTGGATGGCGACGGGTTCATCTCCGCCTCCGAGCTCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCGCAGCCTGGCCAACGTGCGGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGTCTGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTCTTTGGCGCCTGACCACTTCTTCCATCCAGGGTAGCCATGGCATCCGCTCACCCTCACCTAGCTTCTGAAGTTCTGAAAACAAAGACGTAAGAGAAGGCACTACCATACTAGATCGCAGCCAAGATCAGTAGGTTCGGTGTAATCTTTTTAAGCTTAAGGCCAAGCCATTCCACTTTTGTTGCAAAAAAAAAA]


>consensus_12544#4 CACCGTCGGCGCCCACGTCCCCGACGGCGCGCGGGCTCCGGTTCGAGGACTTCGAGTCCC TCCACCGCGCCCTCGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACGCGGCGCG GCGGCGGCGGCGACGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGTACGTGGATGGCGAC GGGTTCATCTCCGCCTCCGAGCTCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCG CAGCCTGGCCAACGTGCGGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGT CTGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTCTTTGGCGCCTGACCAC TTCTTCCATCCAGGGTAGCCATGGCATCCGCTCACCCTCACCTAGCTTCTGAAGTTCTGA AAACAAAGACGTAAGAGAAGGCACTACCATACTAGATCGCAGCCAAGATCAGTAGGTTCG GTGTAATCTTTTTAAGCTTAAGGCCAAGCCATTCCACTTTTGTTGCAAAAAAAAAA



consensusID : consensus_12544#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence
                              [GGTGGCGCATGCTGGGGTGCATGTGGTGGTGTGCACTGCACTGANATGCCAAATGAAGGCTGTGTGCTGNGTNATGGTGAAGAAGATACCAAAATTGGTGGACCTGATGATTGCAGAACAATGGTCTTTTNNGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAAAAAAAA]

[+] EMBL BQ906283             [GGTGGCGCATGCTGGGGTGCATGTGGTGGTGTGCACTGCACTGANATGCCAAATGAAGGCTGTGTGCTGNGTNATGGTGAAGAAGATACCAAAATTGGTGGACCTGATGATTGCAGAACAATGGTCTTTTNNGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAAAAAAAA]


>consensus_12544#5 GGTGGCGCATGCTGGGGTGCATGTGGTGGTGTGCACTGCACTGANATGCCAAATGAAGGC TGTGTGCTGNGTNATGGTGAAGAAGATACCAAAATTGGTGGACCTGATGATTGCAGAACA ATGGTCTTTTNNGTTAATTAAAATTGTAATAAGCGTGTGCTTGGTTACTGGTGGAAAAAA AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12544#2      ----------------CTTCCGAAATAGAGAAATTGCCACGGATCGAGGGCGACCGATAA 44
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      -----------GAGAATCCGCGCGCGCGAAAGGGAAGGCCTGATCGGATTCGAGCTGTGC 49
consensus_12544#0      GCGCCTCGATCAGAAATAAGTTCACACAGCCTAATAAACCCCTCGAGAAGACAAGTGTAA 60
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      TGGAAGGCGAGCAGCAGCAGCAGCAGCAGCAGAGCGTCGCGGCGGTGAGGCCGTCGCTGG 104
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      CGGCGAGGAGAGGAGATATGGACGCGAAGCAGAGCGTGGCGGCGGCGAAGCCGTCGCTGG 109
consensus_12544#0      TCGCCAGGGGA-AGCGCGCGAGATGGACGCAGC-TGGCGTCGCCGCAAAGCCGTCGCTGT 118
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ---GGAAGGCGCCGTCGCCGTCGTTCCGGCTCCGGAACGGCAGCCTCAACGCGGTGCGCC 161
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      CGAAGAAGACGGCGTCGGCGTCGTTCCGGCTGAGGAACGGCAGCCTGAACGCGGTGCGGC 169
consensus_12544#0      C---GAGGAAGCCCTCGCCGTCGTTCCGCCTCCGGAACGGCAGCCTGAACGCGCTGCGGC 175
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      TCCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGC 221
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      TGCGCCGCGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACCGTGGACGAGC 229
consensus_12544#0      TGCGCAGGGTGTTCGACCTGTTCGACCGCAACGGCGACGGCGAGATCACGCTCGACGAGA 235
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      TGGCGCAGGCGCTGGACGCGCTCGGCCTCGAGGCCGACCGCGCCGGCCTGGCCGCCACCG 281
consensus_12544#4      -------------------------------------------------------CACCG 5
consensus_12544#1      TGGCGCAGGCGCTCGACGCGCTGGGCCTCGTCGCCGACCGCGACGGCCTCGCCGCCACCG 289
consensus_12544#0      TGGCGTCCGCGCTCGACGCGCTCGGCCTCGGCGCCGACCGCGCGGGGCTGGAGGCCACGG 295
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      TCGGCGCCCACGTCCCCGACGGCGCGGCGGGGCTCCGGTTCGAGGACTTCGAGTCCCTCC 341
consensus_12544#4      TCGGCGCCCACGTCCCCGACGGCGCGC--GGGCTCCGGTTCGAGGACTTCGAGTCCCTCC 63
consensus_12544#1      TCTCCGCCTACGTCCCCGAGGGCGCCGCGGGCCTCCGCTTCGAGGACTTCGACGCGCTCC 349
consensus_12544#0      TCGGGGGCTACATCCCCGCGGGCGCCGCGGGGCTCCGCTTCGGCGACTTCGAGGCACTCC 355
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ACCGCGCCCTCGGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACGGCGGCGG-- 399
consensus_12544#4      ACCGCGCCCTCG-CGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGACG-CGGCG--- 118
consensus_12544#1      ACCGCGCGCTCGGCGACGCCCTCTTCGGCTCGCTCGACGGCGCCGCCGCCGCCGGCGAGC 409
consensus_12544#0      ACCGCGCGCTCGGCGACGCGCTCTTCGGCCCCGTCGAGGAGGAGGAGCCCGGGAAGCA-- 413
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ----CGGCGGCGGCGGCGACGAGGAG------ATGAAGGAGGCGTTCAAGGTGTTCG-AC 448
consensus_12544#4      ----CGGCGGCGGCGGCGACGAGGAG------ATGAAGGAGGCGTTCAAGGTGTTCGTAC 168
consensus_12544#1      CCGGCGGCGGCGGCGGCGACGAGGAGGAGGAGATGCGGGAGGCGTTCAAGGTGTTCG-AC 468
consensus_12544#0      ----AGGGGAGGACGACGACGAGGGCGA---CATGAAGGAGGCGTTCCGGGTGTTCG-AC 465
consensus_12544#3      --------------------------------------------TTCCGGGTGTTCG-AC 15
consensus_12544#5      -----------------------------------GGTGGCGCATGCTGGG-GTGCATGT 24
                                                                   * *  ** ** *    

consensus_12544#2      GTGGATG-GCGACGGGTTCATCT-CCGCCTCCGAGCTGCAGGAGGTGCTGAAGAAGCTCG 506
consensus_12544#4      GTGGATG-GCGACGGGTTCATCT-CCGCCTCCGAGCT-CAGGAGGTGCTGAAGAAGCTCG 225
consensus_12544#1      GTCGACG-GCGACGGGTTCATCT-CGGCGTCGGAGCTCCAGGAGGTGCTCAAGAAGCTCG 526
consensus_12544#0      GAGGACG-GCGACGGCTTCATCT-CCGCCGCCGAGCTGCAGGCCGTGCTCAAGAAGCTCG 523
consensus_12544#3      G-AGACG--CGACGGCATCATCT-CCGCCGCCGAGCTGCAG-CCGTGCTCAAGAAGCTCG 70
consensus_12544#5      GGTGGTGTGCACTGCACTGANATGCCAAATGAAGGCTGTGTGCTGNG-TNATGGTGAAGA 83
                       *  *  *  *   *   * *  * *         ***       * * * * *  *    

consensus_12544#2      GGATGCCGGAGGCCGGCAGCCTGGCCAACGTGC--GGGAGATGATCTGCAACGTCGACCG 564
consensus_12544#4      GGATGCCGGAGGCCG-CAGCCTGGCCAACGTGC--GGGAGATGATCTGCAACGTCGACCG 282
consensus_12544#1      GCCTCCCGGAGGCCGGCAGCCTCGCCACCGTGC--GGGAGATGATCTGCAACGTCGACCG 584
consensus_12544#0      GCCTCCCCGAGGCCCGGAACCTCGCCACGGTGC--AGGAGATGATCTGCAACGTCGACCG 581
consensus_12544#3      GCCTCCCCGAGCCCGGGAACCTCGCCACGGTGGCAGGGAGATGATCTGCAACGTCGACCG 130
consensus_12544#5      AGATACCAAAATTGGTGGACCTGATGATTGCA---GAACAATGGTCTTTTNNGTTAATTA 140
                          * **  *         ***    *  *          *** ***     **  *   

consensus_12544#2      CGACAGCGACGGCCGCGTC-GACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCG 623
consensus_12544#4      CGACAGCGACGGCCGCGTCTGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCG 342
consensus_12544#1      CAACAGCGACGGCCGCGTC-GACTTCGGCGAGTTCAAGTCCATGATGCAGGGCATCACCG 643
consensus_12544#0      CGACTGCGACGGCCGCGTC-GACTTCGGCGAGTTCAAGTGCATGATGCAGAGGATCACCG 640
consensus_12544#3      CGACTGCGACG-CCGCGTC-GACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCG 188
consensus_12544#5      AAATTGTAATAAGCGTGTG----CTTGGTTA---CTGGTGGAAAAAAAA----------- 182
                         *  *  *    ** **      * **  *   *  **  *  *   *           

consensus_12544#2      TCTTTGGCGCCTGACCACTTCT--TCCATCCAGGGTAGCCATGGCATCCGCTCAC-CCTC 680
consensus_12544#4      TCTTTGGCGCCTGACCACTTCT--TCCATCCAGGGTAGCCATGGCATCCGCTCAC-CCTC 399
consensus_12544#1      TCTGGGGCCCCTGATCTCCACCAATCCCTTCAAACATCTTTTGAATTCCATCCAAATTTC 703
consensus_12544#0      TGTGGGGCGCTTGACGGCGGCGA-GCGAGGCCGCCGTCCTTCGTCCTCTCCCCGTGTGTC 699
consensus_12544#3      TGTGGGGCGCTTGACGGCGGCGA-GCGAGGCCGGCGTCCTTCGTCCTCTCCCCGTGTGTC 247
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ACCTA---G--TCAACGTTCTTATCGGCGGGGTTACAAGGAA--GGAC---AACGTGTTA 730
consensus_12544#4      ACCTA---GCTTCTGAAGTTCTGAAAACAAAGACGTAAGAGA--AGGC---ACTACCATA 451
consensus_12544#1      AACCA---AA-CACGCACACGCGCAGTCCAAATTGAATCAAACTGAAC---ATCACTAGG 756
consensus_12544#0      ATGTATGTATCCACGCATTGCAACGTGTCTCTGCTCGGCAAATTTTTCTTGATCGTCCTG 759
consensus_12544#3      ATATT------CTGAAGCATCTGAAGATTGATCTAGGAGCTA--TAACATTACCCTTGGA 299
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ATCATCCATTAGCAGCTGGTCTTTGCATCGTGTGATGACCATCAT--TTCTCATT-GAAC 787
consensus_12544#4      CTAGATC----GCAGCCAAGATCAGTAG-GTTCGGTG-TAATCTT--TTTAAGCT-TAAG 502
consensus_12544#1      TTAACTCAAT-ATATTTATCTCATGCAA--TTACATCACTGTATG--TACATGTGACAAA 811
consensus_12544#0      TGGAATCCTC-CTGTTCTTGACTTGATCTGCTTAATTGTAGCATT--GAGAATTTTCTGT 816
consensus_12544#3      TTGTTTCAGTCAATACTGATTCAGTGGTTGTTGTATGTTGGTCATAATGCAGGTAATGAT 359
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      GAGTGACCAACTCGATGATTCTGTCAGTCCCAGTGAGCGTGATTG--------------- 832
consensus_12544#4      GCCAAGCCATTCCACTTTTGTTGCAAAAAAAAAA-------------------------- 536
consensus_12544#1      GCAGGGCCTGAGCTTTGTTGCTATGGCCTGTTTTGTGTTTAAAAAAATTTTAAATTCTAC 871
consensus_12544#0      GACCACCATGAAATGCGACATTATAGAAAAAAAATGGCATGCGAAGATTTCATTGGTATT 876
consensus_12544#3      GACTG-TAATTTCAGTACTGTTTGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCA 418
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      TCGAACAGGATTCTTTTCAAGTGTTTCTACGGTAATTGAAC------------------- 912
consensus_12544#0      TACTCCGTTACTTAAACATTGTTTTTGTTAATTATTCCTATCCACATATATCTAAGAGGA 936
consensus_12544#3      TGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCATTGTGTTCCTCCTAATCCATAAGCTT 478
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      AAGTTGACCAGCTTCACCACAAGTTTTTCTTTCTTCAATTTCGTGGTGCTTTCGTGCACA 996
consensus_12544#3      TCTGTATGTAAGAAGAACATGTGACCTATATCAGAACATGGTCTTTTTGTTAATTAAAAT 538
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TGCCTAGGCCTATCATTTCCCTTTGTGCGTTGACGTATTCAGCCGTCATTTGAATAAGCG 1056
consensus_12544#3      TGTAATAAGCGTGTGCTTGGTTACTGGTGGAAAAAA------------------------ 574
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TTTGCTTGAAGAAATGGCAGAGAAAGAAGAAATGGGCTTGACATGATTTTCTATTGAAAA 1116
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TATTGTGGACAGGTTTAAAACATAGAAATTTCGTAGAAAACCGTTCAATATTCTAACCAA 1176
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      GGGGAAAATCATTAGCACTAAACAGGGTTATAGAGAACATGGGAAGTTTGTTCTATGATC 1236
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      CTACTACAGGAATATAATATCTATGGAGGCCTTTGGAACAAAGGATTAGACATTACAGAT 1296
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TACTTTAAAGTTATTATCTAACAGACTAATCCATAGTAATTTTGGAAAAAAAAAATCCAT 1356
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      GAGGTCAACTTCATGTTTTCATCCCCTTTCTTGAAAATCAACATCCCCCCCCTCCCCCTA 1416
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TTACATCCAAACCTCTCTTTTAAAGTACTCGTGTTTTTCCATCAGAATTTGAGAAGGCAT 1476
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TTCTCCTTGTTTTCCTCCTTTCTATTTTGAGTTCCCTTCATTCCAAAAGCTTAATTGTTT 1536
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      GAAATCTAATAGATAACTCTTTTAAATCCAAGGAGGCATAGAGTTCTCACATGGACCATT 1596
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      ATCTTCTTGTTCTTTCATTAGTACAGTAGTGTACGTTTAAGCACATGAAGATTGCTAGGC 1656
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      CAACCTAACGTCTGCTTATGAATACCTACCACATGTTAATAGGAACTTGCATCAGCATGT 1716
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TTGCATGCTCTACACTTTATATGATTACGCATTGCTTTCTTATTATACATGTTTGGCTTT 1776
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      AAACCAAGTTTTTATATGCCTTCAAGTAATGTACTCCATTGATTTGCAGATTCTGAAGCA 1836
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TCTGAAGATTGATCTAGGAGCTATAACATTACCCTTGGATTGTTTCAGTCAATACTGATT 1896
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      CAGTGTTTGTTGTATGTTGGTCATAATGCAGGTAATGATGACTGTAATTTCAGTACTGTT 1956
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      TGTTTAACTCTTGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGC 2016
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      GCATCTGTGTCATTGTGTTCCTCCTAATCCAATAAGCTTTCTGTATGTAAGAAGAACAAT 2076
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ------------------------------------------------------------
consensus_12544#4      ------------------------------------------------------------
consensus_12544#1      ------------------------------------------------------------
consensus_12544#0      GTGACCTATATCAGAACAATGGTCTTTTTGTTAATTAAAATTGTAATAAGCGTGTGCTTG 2136
consensus_12544#3      ------------------------------------------------------------
consensus_12544#5      ------------------------------------------------------------
                                                                                   

consensus_12544#2      ---------------------
consensus_12544#4      ---------------------
consensus_12544#1      ---------------------
consensus_12544#0      GTTACTGGTGGAATGTTTTTT 2157
consensus_12544#3      ---------------------
consensus_12544#5      ---------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)