These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 673 fasta sequence [CCTCCACGGC-CACTATAAGAGCGCGGCGGCGGCGGCGGCG-GGGGCGGGGGGCCATGGCGGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT-GTTGGAATCGGT-GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA-GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAATAATACTCCCTCCGTTTCAAAAAA] [+] EMBL AU077699 [CCTCCACGGC CACTATAAGAGCGCGGCGGCGGCGGCGGCG GGGGCGGGGGGCCATGGCGGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTTCAAACTCAAC ] [+] EMBL AU166249 [ CTCCACGGC CACTATAAGAGCGCGGCGGCGNCGGCCGCG GGGGCGGGGGGCCATGGCGGNNNAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAAaaa ] [+] EMBL C27600 [ CGGCNCACTATAAGAGCGCGGC GNNGCGNCGGCGNGNGGC GGGGGCCATGG GGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAG TGATCCTGCGGGGGCTGCGGTTCCATGGCACCCAC GGGTATAGCCAGANGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGANTCCGACGCCTGGATGGATCTCGCCGCCGCCCGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT TGCTCANTCGATTGCAAACTNAACCCTTCTCAAGTTCCCTCAAATTTttt ] [+] EMBL AU092573 [ TAAGAGCGCGGCGGCGGCGGCGGCG GGGGCGGGGGGCCATGGCGGGNNAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAA ] [+] EMBL AU069116 [ AAGAGCGCGGNGGNGGCGGCGGCG GGGGCGGGGGGCCATGGCGNGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGNTGGNTCTNGCCGCCGCCGGGGACTCCNACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGANTGTAGTCGAAGGNCCGTCGCACAATCTNTTTGGAATCGGTGGGCTCAGTCGATTNCAAA ] [+] EMBL AK121222 [ ATGGCGGGGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTATTAATTAATACTC ] [+] EMBL OSR06621A [ GGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGCTGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCATGATCAAGTTCCCTCAGNTTTCTGCAGTTCGNGTCAAGGTTGACAAAACCTCATGTTGCTGTTNAGG ] [+] EMBL AU031705 [ GACAAGCTNAT CTGCGGGGGCTNCGGTTCCATGGCACCCACGGGNTGAAGCCAGAGGAGAAGAAGCTGGNCCAGAAGTTCGTCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGNCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTATTAATTAATACTCCCTCCGTTTCAAAAAA] [+] EMBL AU181774 [ CCGCCGGGGACTCCGACGACATCTCCGACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGCACAATCT GTTGGAATCGGT GGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTCAGATTTCTGCAGTTCGAGTGAAGGTTGA GAAACCTCATGTTGCTGTTCAGGGAGTCCTCGACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTCAGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTATCATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTTGCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAA ] consensusID : consensus_12546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [GGTTCCATGGCACCCACGGGTAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGGCTCGACNCNTGGATGGATCTCGCCGCCGCCGGGGACTCGACTGACATCTCGACTACGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATTGAGTCGAGGCCCGTNACAA] [+] EMBL AA749628 [GGTTCCATGGCACCCACGGGTAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCGTCATCGGCTCGACNCNTGGATGGATCTCGCCGCCGCCGGGGACTCGACTGACATCTCGACTACGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATTGAGTCGAGGCCCGTNACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12546#0 CCTCCACGGCCACTATAAGAGCGCGGCGGCGGCGGCGGCGGGGGCGGGGGGCCATGGCGG 60 consensus_12546#1 ------------------------------------------------------------ consensus_12546#0 GGAAGAAGGAGGAGGAGGAGGCTGTTGTGTACAGGGGCGACAAGCTGATCCTGCGGGGGC 120 consensus_12546#1 ------------------------------------------------------------ consensus_12546#0 TGCGGTTCCATGGCACCCACGGGGTGAAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCG 180 consensus_12546#1 ---GGTTCCATGGCACCCACGGGT--AAGCCAGAGGAGAAGAAGCTGGGCCAGAAGTTCG 55 ******************** ********************************** consensus_12546#0 TCATCGACGTCGACGCCTGGATGGATCTCGCCGCCGCCGGGGACTCCGACGACATCTCCG 240 consensus_12546#1 TCATCGGC-TCGACNCNTGGATGGATCTCGCCGCCGCCGGGGACTCGACTGACATCTC-G 113 ****** * ***** * ***************************** ******** * consensus_12546#0 ACACCGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATGTAGTCGAAGGCCCGTCGC 300 consensus_12546#1 ACTACGTCAGCTACACCGAAATCTACAGGATAGCCAAGAATTGAGTCGA-GGCCCGTNAC 172 ** ************************************* ****** ******* * consensus_12546#0 ACAATCTGTTGGAATCGGTGGCTCAGTCGATTGCAAACTCAACCCTGCTCAAGTTCCCTC 360 consensus_12546#1 AA---------------------------------------------------------- 174 * consensus_12546#0 AGATTTCTGCAGTTCGAGTGAAGGTTGAGAAACCTCATGTTGCTGTTCAGGGAGTCCTCG 420 consensus_12546#1 ------------------------------------------------------------ consensus_12546#0 ACTATTTGGGCGTGGAGATATTCAGGCAGAGAAAAGCATGAACAACACCTATACTTGTTC 480 consensus_12546#1 ------------------------------------------------------------ consensus_12546#0 AGAACCTCATTCGAACAGATACGTACTTAGTGTACTTGTCTTATCTTTATTGCTCGTTAT 540 consensus_12546#1 ------------------------------------------------------------ consensus_12546#0 CATACCAATATTATTCACTCAGTATCCATGTCAAGAACTAGAAAATTCCCTGTTTAATTT 600 consensus_12546#1 ------------------------------------------------------------ consensus_12546#0 GCACGAAGAGGAATATATATGTAACGTAGATTGTTGTGGTACTAAAAAATAATACTCCCT 660 consensus_12546#1 ------------------------------------------------------------ consensus_12546#0 CCGTTTCAAAAAA 673 consensus_12546#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||