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Oryza sativa
cluster # 12549 cluster # 12549       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12549#0 length = 1061 sequences # 2  
consensus_12549#1 length = 937 sequences # 3  
consensus_12549#2 length = 631 sequences # 5  

consensusID : consensus_12549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1061
fasta sequence
                              [TTGCGATAGCAAGATCACAAATTTCTCAGCGCCGGCTGCCGCCTAACCCTAACCATCGCCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGA-GAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCAAGAAGACTGGAAAGAAAGTTCTCTTATGTCAAACGCAAGACTCCTCATCCCTGCTCCCGCAGGCCATCGATCCCGCCTGACAGCAAGGCCTAAGCATCGCTCGATCTACTTTTCTTTTTACCTGTGTATATGTGTTTGTTGCGTTCCAATTTGTTGTTCTTTGATTTGATCAAGAGCAGTTTGTCGATGGTTGATATGTTCCCTAGGGGTTCGTATTATAAATCATGTTGCTTTGTTGATCATGTTTGTATTGATCTGTTTCAGGTAACTACATGGTTGTTTGTCGATTTATTATGTTACCAAATGTAAATTATTGTGCATTGCAAAGAGGGTCATCTTTGTTTTAAACAATCTGCAACTTACATTGCATATGCGATGAGCTGTACTGAAATTCCTGACTG]

[+] EMBL AK109563             [TTGCGATAGCAAGATCACAAATTTCTCAGCGCCGGCTGCCGCCTAACCCTAACCATCGCCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGA GAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCAAGAAGACTGGAAAGAAAGTTCTCTTATGTCAAACGCAAGACTCCTCATCCCTGCTCCCGCAGGCCATCGATCCCGCCTGACAGCAAGGCCTAAGCATCGCTCGATCTACTTTTCTTTTTACCTGTGTATATGTGTTTGTTGCGTTCCAATTTGTTGTTCTTTGATTTGATCAAGAGCAGTTTGTCGATGGTTGATATGTTCCCTAGGGGTTCGTATTATAAATCATGTTGCTTTGTTGATCATGTTTGTATTGATCTGTTTCAGGTAACTACATGGTTGTTTGTCGATTTATTATGTTACCAAATGTAAATTATTGTGCATTGCAAAGAGGGTCATCTTTGTTTTAAACAATCTGCAACTTACATTGCATATGCGATGAGCTGTACTGAAATTCCTGACTG]
[+] EMBL C72246               [                        CTCAGCGCCGGCTGCCGNCTAACCCTAACCATCGCCGCTCCGATCCTNACCNNCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGG GCCCCTCCCCGCCAACTNCCCTCCTNCCCTCATCCAAATNGACTCCGCCGGCACGAAAGCGCCCCTNCTNCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTNATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTNTGCAACGTGGAGTGTATATNGCATACTTTAGGAATCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_12549#0 TTGCGATAGCAAGATCACAAATTTCTCAGCGCCGGCTGCCGCCTAACCCTAACCATCGCC GCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGC GCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCC GCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGC TCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAA TTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATG CAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTG CTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTA TAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTG TGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGGTTGGAATTGCTGCGGGATCA TCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCA AGAAGACTGGAAAGAAAGTTCTCTTATGTCAAACGCAAGACTCCTCATCCCTGCTCCCGC AGGCCATCGATCCCGCCTGACAGCAAGGCCTAAGCATCGCTCGATCTACTTTTCTTTTTA CCTGTGTATATGTGTTTGTTGCGTTCCAATTTGTTGTTCTTTGATTTGATCAAGAGCAGT TTGTCGATGGTTGATATGTTCCCTAGGGGTTCGTATTATAAATCATGTTGCTTTGTTGAT CATGTTTGTATTGATCTGTTTCAGGTAACTACATGGTTGTTTGTCGATTTATTATGTTAC CAAATGTAAATTATTGTGCATTGCAAAGAGGGTCATCTTTGTTTTAAACAATCTGCAACT TACATTGCATATGCGATGAGCTGTACTGAAATTCCTGACTG



consensusID : consensus_12549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 937
fasta sequence
                              [GCCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTT-GAAATAT--GGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGGGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCAAGAAGATCTTTTTGCTGAGGGAGCACTGGCCCTAGAGCAAAGGATTATGTAGATGTGCGGCGCATGCAGCAGCGCAATGGCAGCAAAAGTTTATCATAATATCCTCAATGATCGATCTGAAAAACAAAGTGTGCTGAAATGGTAGTATAAGATAAGAGCTTGACCATGTAGGATGCACTTGGCAAGCCTTACTGGTTCTCAATTTTCTTCTGAACGGATTTGCACATCCTGATAGCATAATCCAATGCTTCTTTTTTCCCCCTTTTTCAGGTTAATTCCAGTGGCCAGTTTGTAGGAATATCTTACATATTATGCCCTATT]

[+] EMBL AK109535             [GCCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTT GAAATAT  GGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGGGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCAAGAAGATCTTTTTGCTGAGGGAGCACTGGCCCTAGAGCAAAGGATTATGTAGATGTGCGGCGCATGCAGCAGCGCAATGGCAGCAAAAGTTTATCATAATATCCTCAATGATCGATCTGAAAAACAAAGTGTGCTGAAATGGTAGTATAAGATAAGAGCTTGACCATGTAGGATGCACTTGGCAAGCCTTACTGGTTCTCAATTTTCTTCTGAACGGATTTGCACATCCTGATAGCATAATCCAATGCTTCTTTTTTCCCCCTTTTTCAGGTTAATTCCAGTGGCCAGTTTGTAGGAATATCTTACATATTATGCCCTATT]
[+] EMBL CF338807             [ CCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTNGAAATATGGGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF338254             [ CCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCAGCCAACTCCCCTACTCCCCTCATGCAAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_12549#1 GCCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCG CGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGAC TCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCT CGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACAC TAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAG ATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAAT TTGCTGTTCTGCAACGTGGGGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCA TTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACAT GTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGG AATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTT ACAGAGTCAAGTTCCAAGAAGATCTTTTTGCTGAGGGAGCACTGGCCCTAGAGCAAAGGA TTATGTAGATGTGCGGCGCATGCAGCAGCGCAATGGCAGCAAAAGTTTATCATAATATCC TCAATGATCGATCTGAAAAACAAAGTGTGCTGAAATGGTAGTATAAGATAAGAGCTTGAC CATGTAGGATGCACTTGGCAAGCCTTACTGGTTCTCAATTTTCTTCTGAACGGATTTGCA CATCCTGATAGCATAATCCAATGCTTCTTTTTTCCCCCTTTTTCAGGTTAATTCCAGTGG CCAGTTTGTAGGAATATCTTACATATTATGCCCTATT



consensusID : consensus_12549#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 631
fasta sequence
                              [CCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCAAGAAGGTATAATGCAC]

[+] EMBL CF340003             [CCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCAAGAAGGTATAATGCAC]
[+] EMBL CF338249             [CCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTA                               ]
[+] EMBL CF338256             [CCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGT                                                                                               ]
[+] EMBL CF339803             [ CGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACAGAGTCAAGTTCCAAGAAAGTATAATGCA ]
[+] EMBL CF339837             [ CGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTATAGTTGTACATCATAGATCCCATC                                                                                                                                                                                         ]


>consensus_12549#2 CCGCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGC GCGCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACT CCGCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTC GCTCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACT AATTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGA TGCAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATT TGCTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCAT TATAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATG TGTGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGA ATTGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTA CAGAGTCAAGTTCCAAGAAGGTATAATGCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12549#1      ---------------------------------------------------------GCC 3
consensus_12549#2      ----------------------------------------------------------CC 2
consensus_12549#0      TTGCGATAGCAAGATCACAAATTTCTCAGCGCCGGCTGCCGCCTAACCCTAACCATCGCC 60
                                                                                 **

consensus_12549#1      GCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGC 63
consensus_12549#2      GCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGC 62
consensus_12549#0      GCTCCGATCCTTCCCTCCCCCGCCGCCGCCACAGACGATTCTGACGGCCCGCCTTCGCGC 120
                       ************************************************************

consensus_12549#1      GCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCC 123
consensus_12549#2      GCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCC 122
consensus_12549#0      GCGACGCCGCCGGCGCCCCTCCCCGCCAACTCCCCTCCTCCCCTCATCCAAATCGACTCC 180
                       ************************************************************

consensus_12549#1      GCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGC 183
consensus_12549#2      GCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGC 182
consensus_12549#0      GCCGGCACGAAAGCGCCCCTCCTCCTCGACCGCGTTCCGACACTGCCGGTGCCCCCTCGC 240
                       ************************************************************

consensus_12549#1      TCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAA 243
consensus_12549#2      TCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAA 242
consensus_12549#0      TCCGACCGCGTTGCGCCGCCGTCGAATCCCGTCTCCATTGTCAAATTGATTGCACACTAA 300
                       ************************************************************

consensus_12549#1      TTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATG 303
consensus_12549#2      TTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATG 302
consensus_12549#0      TTTTGAAATATGGGAGCACATCAGAAGGTTCTCATTATGACAGCGGATGGTACACAGATG 360
                       ************************************************************

consensus_12549#1      CAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTG 363
consensus_12549#2      CAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTG 362
consensus_12549#0      CAATCGTAAACCTTCTGTCTATATAGTCAATAAAACAGTTTTACTGGATCCTTGAATTTG 420
                       ************************************************************

consensus_12549#1      CTGTTCTGCAACGTGGGGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTA 423
consensus_12549#2      CTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTA 422
consensus_12549#0      CTGTTCTGCAACGTGGAGTGTATATAGCATACTTGAGAATCATTGGTTGTCACTGCATTA 480
                       **************** *******************************************

consensus_12549#1      TAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTG 483
consensus_12549#2      TAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTG 482
consensus_12549#0      TAGTTGTACATCATAGATCCCATCAAATATTGGATCAATTGTGACTTGCGAGCACATGTG 540
                       ************************************************************

consensus_12549#1      TGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAAT 543
consensus_12549#2      TGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAGATCATTTGTCAAGGTTGGAAT 542
consensus_12549#0      TGCAGCGTGAGCAGTTGGGCTGCAACTTGCCAGGGCAAG-------------GTTGGAAT 587
                       ***************************************             ********

consensus_12549#1      TGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACA 603
consensus_12549#2      TGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACA 602
consensus_12549#0      TGCTGCGGGATCATCCGAGGCCTCGACACGACATACCCTCGTCTCATTGCTCAGTTTACA 647
                       ************************************************************

consensus_12549#1      GAGTCAAGTTCCAAGAAGATCTTTTTGCTGAGGGAGCACTGGCCC-TAGAGCAAAGGATT 662
consensus_12549#2      GAGTCAAGTTCCAAGAAGGTATAATGCAC------------------------------- 631
consensus_12549#0      GAGTCAAGTTCCAAGAAGAC-----TGGAAAGAAAGTTCTCTTATGTCAAACGCAAGACT 702
                       ******************                                          

consensus_12549#1      ATGTAGATGTGCGGC-GCATGC-AGCAGCGCAA--TGGCAGCAAAAGTTTATCAT----- 713
consensus_12549#2      ------------------------------------------------------------
consensus_12549#0      CCTCATCCCTGCTCCCGCAGGCCATCGATCCCGCCTGACAGCAAGGCCTAAGCATCGCTC 762
                                                                                   

consensus_12549#1      AATATCCTCAATGATCGATCTGAAAAACAAAGTGTGCTG------AAATGGTAGT----- 762
consensus_12549#2      ------------------------------------------------------------
consensus_12549#0      GATCTACTTTTCTTTTTACCTGTGTATATGTGTTTGTTGCGTTCCAATTTGTTGTTCTTT 822
                                                                                   

consensus_12549#1      -ATAAGAT-AAGAGC---TTGACCATGTAGGATGCACTTGGCAAG---CCTTACTGGTTC 814
consensus_12549#2      ------------------------------------------------------------
consensus_12549#0      GATTTGATCAAGAGCAGTTTGTCGATGGTTGATATGTTCCCTAGGGGTTCGTATTATAAA 882
                                                                                   

consensus_12549#1      TCAATTTTCTTC--TGAACGGATTTGCAC--ATCCTGATAGCATAATCCAATGCTTCTTT 870
consensus_12549#2      ------------------------------------------------------------
consensus_12549#0      TCATGTTGCTTTGTTGATCATGTTTGTATTGATCTGTTTCAGGTAACTACATGGTTGTTT 942
                                                                                   

consensus_12549#1      -----TTTCCCCCTTTTTCAG--GTTAATTCCAGTGGCCAGTTTGTAGGAATATCTTACA 923
consensus_12549#2      ------------------------------------------------------------
consensus_12549#0      GTCGATTTATTATGTTACCAAATGTAAATTATTGTGCATTGCAAAGAGGGTCATCTT-TG 1001
                                                                                   

consensus_12549#1      TATTATGCCCTATT---------------------------------------------- 937
consensus_12549#2      ------------------------------------------------------------
consensus_12549#0      TTTTAAACAATCTGCAACTTACATTGCATATGCGATGAGCTGTACTGAAATTCCTGACTG 1061
                                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)