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Oryza sativa
cluster # 12557 cluster # 12557       Sequences # 10       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12557#0 length = 2286 sequences # 5  
consensus_12557#1 length = 690 sequences # 4  
consensus_12557#2 length = 305 sequences # 1  

consensusID : consensus_12557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2286
fasta sequence
                              [CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCGTCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTTGTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAAACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGTTTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTATTGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCACACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATTGCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGGACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGCTGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTTCCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGCGATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGCACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGGGTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTTTGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGGGTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAGCGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAAAAAAAAAAAAA]

[+] EMBL AK121377             [CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCGTCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTTGTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAAACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGTTTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTATTGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCACACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATTGCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGGACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGCTGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTTCCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGCGATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGCACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGGGTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTTTGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGGGTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAGCGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAA                           ]
[+] EMBL AU182706             [                   AGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCGTCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTTGTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAAACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGTTTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTATTGTTAAGAGCGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK063143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GTTTGGAAAAAGCAAGAGGGGATTGAT  TGGGCATTTGGAATGCACACACTTCTGTCGGCAACATATCTGGTTCACTGCTGGCTGCATTTCTGCTGAAGTTTGGGTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTTTGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGGGTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAGCGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAG                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU056901             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAGCTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAATGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCTCTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCATACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTTTGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGCACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCGCACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTTCGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAGCTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGANAGCCATCATTGACGGGANCGGGTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU182707             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAANAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTNTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAAAAAAAAAAAAA]


>consensus_12557#0 CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAA CTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCC TTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCG TCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTT GTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAA ACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGT TTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTAT TGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCA CACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATT GCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGG ACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGC TGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTT CCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGC GATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGC ACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGG GTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTT TGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAG CTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAA TGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCT CTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCA TACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTT TGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGC ACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCG CACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTT CGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAG CTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGG GTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAG CGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACT TGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGC TCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGA CACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTT TATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGAT GTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGAT TAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAG CCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTG TGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGG GAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTT TTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAAAAAAA AAAAAA



consensusID : consensus_12557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 690
fasta sequence
                              [GGAGCGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATG-CGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCT-TGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCA-TCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT--TC--TCA---AAAAAAAAAAAAAAAAA]

[-] EMBL CA761145             [GGAGCGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACACAACTTGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATG CGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGACACGATACATGGATTAGATTCT TGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTTTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCA TCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT  TC  TCATTCAAGAAAAAAAAAAAAAA]
[+] EMBL AU056902             [                                                                                                  AATGCCGAGCAAGGATGTCGCCGATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCNAGTCGCACCCCAAGACACGANACATGGATTNGATTCTCCGTAGCTCCANAGCACTGCTTGGCAAGAAGTTGCATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCANAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCA TCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT  TC  TCA   AAAAAAA          ]
[+] EMBL AU181240             [                                                                                                                                                                                                                                                                        tnTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTNTGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATTCTTGGCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGTTNTCNTTCA   AAAAAAAAAA       ]
[+] EMBL BI796168             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGCTTGTATCCTATTGTTGTAGTTTA GGCAGAC AAGGGAACCTCTCTTGTTCAAAGGTTACCC AAGTCTGTGTTTGCT GCCA TCTT GCCTCGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAATTGT  TC  TCA   TTCAAAA          ]


>consensus_12557#1 GGAGCGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACAC AACTTGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCG ATGCTCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCC AAGACACGATACATGGATTAGATTCTTGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGC ATTTTATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAG AGATGTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGAT AGATTAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTC TGAGCCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGT GTTGTGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACA AAGGGAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCT CGTTTTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAG TGAATTGTTCTCAAAAAAAAAAAAAAAAAA



consensusID : consensus_12557#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence
                              [GGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGAGGAGGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAGGAAAATTGTTCTTTGTACTGTGTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTTGTTAGGGAAAGTTTGGGTT]

[+] EMBL C93434               [GGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGAGGAGGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAGGAAAATTGTTCTTTGTACTGTGTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTTGTTAGGGAAAGTTTGGGTT]


>consensus_12557#2 GGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTT CTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCCTTCCCATTGCGCATTCCGGC TAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGAGGA GGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAGGAAAATTGTTCTTTGTACTGT GTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTTGTTAGGGAAAGTTT GGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12557#0      CAAACACCCAAAAAAAAGAAGGCAAAAAAAGAAAAAATCTCACCACGAGCAGCACAAGAA 60
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTCCTCTCCTCTCTTCTCTTCTCCCCTACTCCTTGATTGAAAACCCACGCATCCTCCTCC 120
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TTCCCATTGCGCATTCCGGCTAGTCGCCTCGCCGATCCCTCTCCCGCCCGGCGCGGATCG 180
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TCGTCCCCTTCGCGGAGGAGGTGTTAATCATTCTTGGACCAAGAAGTCTGTCTCTGCTTT 240
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GTCAGTAACTAGCAACCTTGGTGTTCTCATGGCTCATTCTCATGAAATGACGAGTAGGAA 300
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACCTCCTGGTATTCGATTATTCGGAGGCATTACGGTGCTACGGACGTACCAGACACTTGT 360
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TTTGGTGCTTACATTTGTCGCGTATACTTGCTTTCATATGACTAGGAAGATACCGAGTAT 420
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTTAAGAGCGTGCTTGATCCACAGACAAAGTTGGGGTCCTCTCCATGGGGACGACTGCA 480
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CACAAAAAACACTCTTAACATCGGTTGGTTGCCGTTTAACACCATTGATGGCTCAGCATT 540
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GCTTGGTGAGATAGATGTGGCGTTTCTTGCGGTTTATTCTGTTGGGATGTTCTTTGCTGG 600
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACATCTTGGTGACCGCATGGATTTAAGGATCTTCCTGACAATTGGCATGTTTGGAACTGC 660
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTGTTCACTGCCCTTTTTGGTGCTGGATATTGGCTAAATATCCACAATTTCTACTATTT 720
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CCTGGTCATTCAGATGATTGCCGGTTTATTCCAAGCAATTGGATGGCCTTCAGTTGTCGC 780
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GATTGTTGGAAACTGGTTTGGAAAAAGCAAGAGGGGATTGATTATGGGCATTTGGAATGC 840
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACACACTTCTGTCGGCAACATATCTGGTTCTCTGCTGGCTGCATTTCTGCTGAAGTTTGG 900
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GTGGGGCTGGTCATTTGCCATCCCCAGCTTAATCATGGTTGCTGTCGGGTTGTTGGTGTT 960
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTCTTCTTACCGGTTAGCCCAGAGGTGATGGAGATAGACATTGATGATGGGGAGATAAG 1020
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTCTGTTAAGGATACTACCAAGGAGCCCCTCTTGGAACCAGGACAAGAAGTGAAACACAA 1080
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGCAGTAGGTTTCTTAGAGGCTTGGAAGATACCTGGAGTTGCGCCCTTTGCTCTGTGCCT 1140
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTTCTTCTCCAAATTGGTTGCTTACACCTTCTTGTATTGGCTACCGTTCTACATCAGTCA 1200
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TACACCTATTGGCGGTGAGTACCTCTCAGATGCTTTGGCTGGCAGCCTATCAACAATCTT 1260
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGATGTTGGAGGCGTGTTGGGTGGAGTCCTTGCTGGTCACATCTCGGATCGCTTAAATGC 1320
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      ACGAGCGGTTACAGCTGCCAGCTTCATGTACTGCGCGATACCTGCCCTCTTCCTATACCG 1380
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CACATACGGCAGCATGTCGATAATGTGGAACATTTGCCTCATGTTCATCACCGGGATGTT 1440
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CGTCAATGGTCCTTATGCCCTAATCACAACTGCAGTGTCAGCTGACCTTGGCACTCACAG 1500
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CTCATTGAATGGAAATTCCCGGGCATTGGCTACTGTGACAGCCATCATTGACGGGACCGG 1560
consensus_12557#1      ------------------------------------------------------------
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GTCTGTTGGCGCCGCCATTGGGCCATTGCTGACAGGCTACATCTCGTCGAGTAGTTGGAG 1620
consensus_12557#1      --------------------------------------------------------GGAG 4
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      CGCTGTGTTCACGATGCTTATGGCAGCAGCTCTCCTTGCTGGGCTCCTCTTGACACAACT 1680
consensus_12557#1      CGCTGTGTTCACGATGCTTATGGCAACAGCTCTCCTGCTGGGGCTCCTCTTGACACAACT 64
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TGTGTGCAGTGAACTAAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGC 1740
consensus_12557#1      TGTGTGCAGTGAACTGAAAGGAAAGGCGACCTCCAATGCGAGCAAGGATGTCGCCGATGC 124
consensus_12557#2      ---------------------------------------------------GGCAAAAAA 9
                                                                           **  *   

consensus_12557#0      TCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGA 1800
consensus_12557#1      TCAAGGTACCTACTCAGATGAGGTGTAAGACTGTAAGTAAGATCTAGTCGCACCCCAAGA 184
consensus_12557#2      AGAAAAAATCTCACCACGAGCAGCACAAGAACTCCTCTCCTCTCTTCTCTTCTCCC---- 65
                         **   * **   **   *  *   ****       *    ***  **    ***    

consensus_12557#0      CACGATACATGGATTAGATTCTCGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTT 1860
consensus_12557#1      CACGATACATGGATTAGATTCTTGTAGCTCCAAAGCACTGCTTGGCAAGAAGTTGCATTT 244
consensus_12557#2      --CTACTCCTTGATTGAAAACCCACGCATCCTCCTC-CTTCCCATTGCGCA-TTCCGGCT 121
                         * *  * * ****  *  *       ***    * ** *       * * ** *   *

consensus_12557#0      TATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGAT 1920
consensus_12557#1      TATTGCTTCCTGCACATGTCTTGATCACCTCTGGTTTGAGGCTGAAATAACCAAAGAGAT 304
consensus_12557#2      AGTCGCCTC--GCCGATCCCTC--TCCCGCCCGGCGCGGATTCGTCGTCCCCTTCGCGGA 177
                         * ** **  **  **  **   ** *  * **   *     *   *  **   * *  

consensus_12557#0      GTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGAT 1980
consensus_12557#1      GTGGTTACCAAGTGGTTTGCTTAATGCAACTCCAGAAAGAGGTGCATGAAATAGATAGAT 364
consensus_12557#2      GGAGGTGCCAATCCCTGTTCTTGATTTTNTTTTTAAAAAAAG----GAAAATTGTT---- 229
                       *  * * ****    * * *** **     *    *** * *      **** * *    

consensus_12557#0      TAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAG 2040
consensus_12557#1      TAGTTTAGTTTCAGGTTCAGAGAATACAGGGGTGAAAACGCCTCAACCAAAGTTTCTGAG 424
consensus_12557#2      ---CTTTGTACTGTGTGGAGCGGATTTTGGGGGGTAATCTGGTGCTTTGTGGTGTTCGTT 286
                           ** **     **  ** * **   **** * ** *   *        ** *  *  

consensus_12557#0      CCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTG 2100
consensus_12557#1      CCCAAATATAGGCTCAGGCCGCCTTGTACATATACTGGGCAATAGGTTATCATTGTGTTG 484
consensus_12557#2      GTTAGGGA-AAGTTTGGGTT---------------------------------------- 305
                          *   * * * *  **                                          

consensus_12557#0      TGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGG 2160
consensus_12557#1      TGTGTAGTAAGTATAAATTCAAGCTTGTATCCTATTGTTGTAGTTTAGGGCAGACAAAGG 544
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      GAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTT 2220
consensus_12557#1      GAACCTCTCTTGTTCAAAGGTTACCCAAAGTCTGTGTTTGCTGGCCATCTTGGCCTCGTT 604
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      TTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAAAAA----- 2275
consensus_12557#1      TTGTATATGTAAAGTTGAGAAGATTGAGAAAATTTTGAATTGAGGTTTCAAGAAAGTGAA 664
consensus_12557#2      ------------------------------------------------------------
                                                                                   

consensus_12557#0      --------AAAAAAAAAAA------- 2286
consensus_12557#1      TTGTTCTCAAAAAAAAAAAAAAAAAA 690
consensus_12557#2      --------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)