cluster # 12562

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 12562 cluster # 12562 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12562#0 length = 690 sequences # 8

consensus_12562#1 length = 505 sequences # 1
consensus_12562#2 length = 419 sequences # 1

consensusID : consensus_12562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 690
fasta sequence

                              [TGATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC-ATCTT--CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC-AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAAAAAAACAAAA]

[+] EMBL AU077585             [TGATCTACAAGGTTTACCCCGATGGCACCACGGTTCTGCCGGANTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC ATCTT  CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAAAA        ]
[+] EMBL AK067013             [ GATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC ATCTT  CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGA                          ]
[-] EMBL CB643586             [  ATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCAGCATCAGGCAATTCTACGGTGTC ATCTT  CCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTC                 ]
[+] EMBL BI811387             [                                                                             GGTGTCAATCTTTCCCCGTC CTGCTCCA CT CCGAGTGGGATAACTGAATTGGACGACAGGAACCAGAGGAGGCTGT CCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGT CGGCATCTGCCTCGAGTTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC  AATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAAaa                                                                                    ]
[+] EMBL AU077556             [                                                                                                                                                                                          GGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACC AAATNAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCAaaaa                                                                                                                                                        ]
[-] EMBL CF312035             [                                                                                                                                                                                                                          GAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGT AAAAGAAGATGCTGAAGTGTACTCCAAAAAA          ]
[+] EMBL AU091889             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTCATAAGTAAGCTCCCACTTGTAGTGCTCCATGTGGTTGNCCTTGACATTTACGAGTACCGTATNAAGTGAAANTGTACTCTTTTGTTCATNCCGGTGGGTCTCTGTACATATCNAATTCATCGGTGNTGATCTGTGNTAGCCCANCCTNAGGCTGCAAATTAGCAGAGNTGTTTGTNGTTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAANAAAACAAAA]
[+] EMBL AU077406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGTAAGCNTCCACTTGTAGTGCTCCATGTGGTTGACCTTGNNATTNACGAGTACCGTATCAAGTGAAACTGTNCTCTTTTGTTNATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGNTAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATGCTGAAGTGTACTCCAAAAAA          ]




>consensus_12562#0
TGATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCA
GCATCAGGCAATTCTACGGTGTCATCTTCCCGTCGCTGCTCCAGCTGCCGAGTGGGATAA
CTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGG
AGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGA
ATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATT
GGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGA
GCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGG
AGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGG
TTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGG
TGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTG
CAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATG
CTGAAGTGTACTCCAAAAAAAAAAACAAAA

consensusID : consensus_12562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [GTCAGCAAGCACAACAAGATCTGCAACCTTGTCCGTACTCTTCCTACTTGCCGAGGCGTTCACTTCGTCTGATGCATGAATCTGATCGAATTCCGTGGGCCATTTAACGAAATTTGGCTTGTCACATATGCAGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAAATTTTTGGAAAAGAACATGCTGAAGTGTACTCCA]

[-] EMBL CB638244             [GTCAGCAAGCACAACAAGATCTGCAACCTTGTCCGTACTCTTCCTACTTGCCGAGGCGTTCACTTCGTCTGATGCATGAATCTGATCGAATTCCGTGGGCCATTTAACGAAATTTGGCTTGTCACATATGCAGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAAATTTTTGGAAAAGAACATGCTGAAGTGTACTCCA]




>consensus_12562#1
GTCAGCAAGCACAACAAGATCTGCAACCTTGTCCGTACTCTTCCTACTTGCCGAGGCGTT
CACTTCGTCTGATGCATGAATCTGATCGAATTCCGTGGGCCATTTAACGAAATTTGGCTT
GTCACATATGCAGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGA
AGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATA
CGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAG
TGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTT
TGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTC
AACCTGAGGCTGCAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAAATTTTTGGA
AAAGAACATGCTGAAGTGTACTCCA

consensusID : consensus_12562#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [GAAAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAAAAAAAAAAA]

[+] EMBL AU174437             [GAAAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAAAAAAAAAAA]




>consensus_12562#2
GAAAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGCCCGAT
TGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTGGAACACCAAATCAAAGTCGTGC
CCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAGCAGCCTGTGGTTGTACACCGAC
GACCGCGATGTTGTGGATATGGATACGTTGACTAGGGAGAACATTAGGCGCCTGTTCATG
TTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGTTGACCTTGACATTTACGAGTAC
CGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGGTGGGTCTCTGTACATATCAAATT
CATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTGCAAATTAGCAGAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12562#0      TGATCTACAAGGTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCA 60
consensus_12562#2      ------------------------------------------------------------
consensus_12562#1      ------------------------------------------------------------
                                                                                   

consensus_12562#0      GCATCAGGCAATTCTACGGTGTCATCTTCCCGTCGCTGCTCCAGCTGCCGAGTGGGATAA 120
consensus_12562#2      ------------------------------------------------------------
consensus_12562#1      ------------------------------------------------------------
                                                                                   

consensus_12562#0      CTGAATTGGACGACAGGAAGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGG 180
consensus_12562#2      ------------------------------------------------------------
consensus_12562#1      -----------------------------------------------GTCAGCAAGCACA 13
                                                                                   

consensus_12562#0      AGAGGGTCTCGGAGGTGGATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGA 240
consensus_12562#2      -----------------------GAAAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGA 37
consensus_12562#1      ACAAGATCTGCAACCTTGTCCGTACTCTTCCTACTTGCCGAGGCGTTCACTTCGTC-TGA 72
                                                              * *** *   * ***   ***

consensus_12562#0      ATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATT 300
consensus_12562#2      ATGCCAAGATTGTGCTGCCCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATT 97
consensus_12562#1      TGCATGAATCTGATCGAATTCCGTGGGCCATTTAACGAAATTTGGCTTGTCACATATGCA 132
                             *   **  *        ** **    *  *      **   **   *       

consensus_12562#0      GGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGA 360
consensus_12562#2      GGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGA 157
consensus_12562#1      GGAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGA 192
                       ************************************************************

consensus_12562#0      GCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGG 420
consensus_12562#2      GCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGG 217
consensus_12562#1      GCAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGG 252
                       ************************************************************

consensus_12562#0      AGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGG 480
consensus_12562#2      AGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGG 277
consensus_12562#1      AGAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGG 312
                       ************************************************************

consensus_12562#0      TTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGG 540
consensus_12562#2      TTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGG 337
consensus_12562#1      TTGACCTTGACATTTACGAGTACCGTATCAAGTGAAACTGTACTCTTTTGTTCATACCGG 372
                       ************************************************************

consensus_12562#0      TGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTG 600
consensus_12562#2      TGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTG 397
consensus_12562#1      TGGGTCTCTGTACATATCAAATTCATCGGTGCTGATCTGTGATAGCTCAACCTGAGGCTG 432
                       ************************************************************

consensus_12562#0      CAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAATATTTTTGTGAAAAGAAGATG 660
consensus_12562#2      CAAATTAGCAGAAAAAAAAAAA-------------------------------------- 419
consensus_12562#1      CAAATTAGCAGAGTTGTTTGTAGCTCAACGAGTTGATAA-ATTTTTG-GAAAAGAACATG 490
                       ************         *                                      

consensus_12562#0      CTGAAGTGTACTCCAAAAAAAAAAACAAAA 690
consensus_12562#2      ------------------------------
consensus_12562#1      CTGAAGTGTACTCCA--------------- 505