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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 730 fasta sequence
[TTGTTGTTCTCGGAACCGGATCGTGGACTCGCCGTGCTGCCTGGTCACCGGCGAGTACGGCTGGACGGCGAACATGGAGCGGATCATGAAGGCGCAGGCGNTGCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACG-TGA-CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC-ACCTCCGGCTTCAGCCT-CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT-CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA]
[+] EMBL AU091592 [TTGTTGTTCTCGGAACCGGATCGTGGACTCGCCGTGCTGCCTGGTCACCGGCGAGTACGGCTGGACGGCGAACATGGAGCGGATCATGAAGGCGCAGGCGNTGCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACG TGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAAaaa ]
[+] EMBL AU098304 [ AACATGGAGCGGATCATGAAGGCGCAGNCGTTNCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACG TGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACA CTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAA ]
[+] EMBL AU069543 [ TGCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACGCTGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCG ]
[+] EMBL AK063629 [ AGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACGCTGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATG ]
[+] EMBL AU092903 [ CGCGCCGACG TGACCNCCAACGACAANTCCGTCAGGGACCTCGTCCTCCTCATCTTCGAGACGNCGCTGCTCAACCTCCGGCTTCAGCTTCCGACGACCCAAACA CTTCGCCGCCAGGATCCACCGNATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATNCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCNGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA]
consensusID : consensus_12569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 595 fasta sequence
[CGATCCATCTCTGCACAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA]
[+] EMBL AK063751 [CGATCCATCTCTGCACAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAG ]
[+] EMBL AU093134 [ CCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCNGCGGCCGACGACGACGCTNACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA]
[+] EMBL AU098308 [ AAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAAgaaaaa ]
[+] EMBL AK105370 [ AGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATG ]
[+] EMBL AU222530 [ CGAGGAGAGCAAGATGGAGGAGGTGGNCTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTNTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTTTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA]
consensusID : consensus_12569#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[ACGCAAATCCAATCGATCCATCTCTGCACAGCTGCACTTGCATTTCAGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAA]
[+] EMBL AK063698 [ACGCAAATCCAATCGATCCATCTCTGCACAGCTGCACTTGCATTTCAGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12569#1 ------------------------------------------------------------
consensus_12569#2 ------------------------------------------------------------
consensus_12569#0 TTGTTGTTCTCGGAACCGGATCGTGGACTCGCCGTGCTGCCTGGTCACCGGCGAGTACGG 60
consensus_12569#1 ------------------------------------------------------------
consensus_12569#2 ------------------------------------------------------------
consensus_12569#0 CTGGACGGCGAACATGGAGCGGATCATGAAGGCGCAGGCGNTGCGGGACAGCAGCATGGG 120
consensus_12569#1 -----------------------CGATCCATCTCTGCACAGCTGCTCTCCCTCATCATCA 37
consensus_12569#2 -------------------------ACGCAAATCCAATCGAT--CCATCTCTGCACAGCT 33
consensus_12569#0 CGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGA-GAACGGGATCATGGAGG 179
* * ** * *
consensus_12569#1 ACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATG 97
consensus_12569#2 GCACTTGCATTTCAGCCAACGACAAGTCCGTCAGGGACCTCGTCCTC--CTCCTCT---- 87
consensus_12569#0 AGCTCCGGAAGCGCGCCGACGTGA-CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCC 238
* * * * * * * * ** *
consensus_12569#1 CGCTTGACAAGATC-CGCTTCGAGAGCCTCACCTCCGGCTTCAGCCTCGACGACCCAAAC 156
consensus_12569#2 ---TCGAGACGG---CGCTGC-------TCACCTCCGGCTTCAGCCTCGACGACCCAAAC 134
consensus_12569#0 TCCTCTTCGAGACGGCGCTGC-------TCACCTCCGGCTTCAGCCTCGACGACCCAAAC 291
* * **** * ********************************
consensus_12569#1 ACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGAC 216
consensus_12569#2 ACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGAC 194
consensus_12569#0 ACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGAC 351
************************************************************
consensus_12569#1 GCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAG 276
consensus_12569#2 GCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAG 254
consensus_12569#0 GCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAG 411
************************************************************
consensus_12569#1 AGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATC 336
consensus_12569#2 AGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATC 314
consensus_12569#0 AGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATC 471
************************************************************
consensus_12569#1 ATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGT 396
consensus_12569#2 ATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGT 374
consensus_12569#0 ATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGT 531
************************************************************
consensus_12569#1 CGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTT 456
consensus_12569#2 CGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTT 434
consensus_12569#0 CGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTT 591
************************************************************
consensus_12569#1 GCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCA 516
consensus_12569#2 GCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCA 494
consensus_12569#0 GCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCA 651
************************************************************
consensus_12569#1 GTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATG 576
consensus_12569#2 GTATTAA----------------------------------------------------- 501
consensus_12569#0 GTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATG 711
*******
consensus_12569#1 TTTTCAATTCAAAAAAAAA 595
consensus_12569#2 -------------------
consensus_12569#0 TTTTCAATTCAAAAAAAAA 730
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||