These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 730 fasta sequence [TTGTTGTTCTCGGAACCGGATCGTGGACTCGCCGTGCTGCCTGGTCACCGGCGAGTACGGCTGGACGGCGAACATGGAGCGGATCATGAAGGCGCAGGCGNTGCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACG-TGA-CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC-ACCTCCGGCTTCAGCCT-CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT-CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA] [+] EMBL AU091592 [TTGTTGTTCTCGGAACCGGATCGTGGACTCGCCGTGCTGCCTGGTCACCGGCGAGTACGGCTGGACGGCGAACATGGAGCGGATCATGAAGGCGCAGGCGNTGCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACG TGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAAaaa ] [+] EMBL AU098304 [ AACATGGAGCGGATCATGAAGGCGCAGNCGTTNCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACG TGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACA CTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAA ] [+] EMBL AU069543 [ TGCGGGACAGCAGCATGGGCGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACGCTGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCG ] [+] EMBL AK063629 [ AGAAGACGATGGAGATCAACCCGGAGAACGGGATCATGGAGGAGCTCCGGAAGCGCGCCGACGCTGA CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTC ACCTCCGGCTTCAGCCT CGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCAT CATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATG ] [+] EMBL AU092903 [ CGCGCCGACG TGACCNCCAACGACAANTCCGTCAGGGACCTCGTCCTCCTCATCTTCGAGACGNCGCTGCTCAACCTCCGGCTTCAGCTTCCGACGACCCAAACA CTTCGCCGCCAGGATCCACCGNATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATNCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCNGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA] consensusID : consensus_12569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 595 fasta sequence [CGATCCATCTCTGCACAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA] [+] EMBL AK063751 [CGATCCATCTCTGCACAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAG ] [+] EMBL AU093134 [ CCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCNGCGGCCGACGACGACGCTNACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA] [+] EMBL AU098308 [ AAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAAgaaaaa ] [+] EMBL AK105370 [ AGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATG ] [+] EMBL AU222530 [ CGAGGAGAGCAAGATGGAGGAGGTGGNCTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTNTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTTTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATGTTTTCAATTCAAAAAAAAA] consensusID : consensus_12569#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [ACGCAAATCCAATCGATCCATCTCTGCACAGCTGCACTTGCATTTCAGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAA] [+] EMBL AK063698 [ACGCAAATCCAATCGATCCATCTCTGCACAGCTGCACTTGCATTTCAGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCCTCCTCTTCGAGACGGCGCTGCTCACCTCCGGCTTCAGCCTCGACGACCCAAACACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGACGCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAGAGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATCATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGTCGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCAGTATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12569#1 ------------------------------------------------------------ consensus_12569#2 ------------------------------------------------------------ consensus_12569#0 TTGTTGTTCTCGGAACCGGATCGTGGACTCGCCGTGCTGCCTGGTCACCGGCGAGTACGG 60 consensus_12569#1 ------------------------------------------------------------ consensus_12569#2 ------------------------------------------------------------ consensus_12569#0 CTGGACGGCGAACATGGAGCGGATCATGAAGGCGCAGGCGNTGCGGGACAGCAGCATGGG 120 consensus_12569#1 -----------------------CGATCCATCTCTGCACAGCTGCTCTCCCTCATCATCA 37 consensus_12569#2 -------------------------ACGCAAATCCAATCGAT--CCATCTCTGCACAGCT 33 consensus_12569#0 CGCGTACATGTCGAGCAAGAAGACGATGGAGATCAACCCGGA-GAACGGGATCATGGAGG 179 * * ** * * consensus_12569#1 ACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATG 97 consensus_12569#2 GCACTTGCATTTCAGCCAACGACAAGTCCGTCAGGGACCTCGTCCTC--CTCCTCT---- 87 consensus_12569#0 AGCTCCGGAAGCGCGCCGACGTGA-CGCCAACGACAAGTCCGTCAGGGACCTCGTCCTCC 238 * * * * * * * * ** * consensus_12569#1 CGCTTGACAAGATC-CGCTTCGAGAGCCTCACCTCCGGCTTCAGCCTCGACGACCCAAAC 156 consensus_12569#2 ---TCGAGACGG---CGCTGC-------TCACCTCCGGCTTCAGCCTCGACGACCCAAAC 134 consensus_12569#0 TCCTCTTCGAGACGGCGCTGC-------TCACCTCCGGCTTCAGCCTCGACGACCCAAAC 291 * * **** * ******************************** consensus_12569#1 ACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGAC 216 consensus_12569#2 ACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGAC 194 consensus_12569#0 ACCTTCGCCGCCAGGATCCACCGCATGCTCAAGCTCGGCCTCAACATCGACGACGACGAC 351 ************************************************************ consensus_12569#1 GCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAG 276 consensus_12569#2 GCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAG 254 consensus_12569#0 GCCGCCGCGGCCGACGACGACGCTGACATGCCCGCGCTCGATGACGCCGCCGCCGAGGAG 411 ************************************************************ consensus_12569#1 AGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATC 336 consensus_12569#2 AGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATC 314 consensus_12569#0 AGCAAGATGGAGGAGGTGGACTGAATTAAATAAGTACTCGCTGCCATGTCGAAATGCATC 471 ************************************************************ consensus_12569#1 ATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGT 396 consensus_12569#2 ATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGT 374 consensus_12569#0 ATGGTGCCATGGTTGGGTGTGTCTGCGCTGCACTTCAACAGTGTGTGGTCGTGTTTGCGT 531 ************************************************************ consensus_12569#1 CGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTT 456 consensus_12569#2 CGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTT 434 consensus_12569#0 CGTGTCGCCAGTGTTAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTT 591 ************************************************************ consensus_12569#1 GCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCA 516 consensus_12569#2 GCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCA 494 consensus_12569#0 GCATTTGCGTTACTCATGCGTACATCTTTCTAAGCCATCGTTGAGAAAGTAGTAGTATCA 651 ************************************************************ consensus_12569#1 GTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATG 576 consensus_12569#2 GTATTAA----------------------------------------------------- 501 consensus_12569#0 GTATTAAAAAATGATCGAATTCCTATGTCTGAAACTGAAATGATCGACTAAGCTCCAATG 711 ******* consensus_12569#1 TTTTCAATTCAAAAAAAAA 595 consensus_12569#2 ------------------- consensus_12569#0 TTTTCAATTCAAAAAAAAA 730 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||