These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 3098 fasta sequence [GCACCGCTCCGCTGCTGCTGCTGCTGCTGCTCATCATCTCTCCGAAGCTTCTCATCTCCTCTCCACTCCTCCTCCTCCTCCTCCCCCTCGCCACCTCCCACGCGCTGCCACGCCGGCGACACGACCACTGCCTCCCCCCGCGCGGGCGCGCCAAGCGCCGGGATCCCGCTGCTGCGTTCCAGTTCGCGGCCGGGGCGTAGTAACCACAGCAGTGCAATACACCTTAAAATGGGGTCTACACGATCAAAGAATGAAGATGACAAGGCCATTGTCTTATGCCACGAAAGAAAACGATATGTTAGAGAAGCACTTGATGGAAGATGTGCATTCGCAGCTGCTCACTTCGCTTATATTCAATCACTGAGACACACAGGATTTGCTCTGAGAAAATTTTTGGAGCCTGAAGTGCCAACAGATTCTTCGCTGTACACATCGACATCTGCAACACCAGAACCTCCTACTATTCGGCAGAAATCGAGGAACTTATCTCCATCTATTTCACATCAGGCCAGTGACTCTTTCTCCCCAGTTCCATCCCCTTTATCTTCCGGACGGTTCCGTATCAATCATATGAAATCTGGGGGGAACCCTGTCATGACCATTGAGGAGAAGGTGCCTGTTCCTGTAACAGCAACTCTACAAACATCATCCCTTGTTCCTAAAGCTGTACATGACCTGGATGATAGTTCCACATTTGAAGCACCTCCAGGGACACCACCGTGGGACTACTTTGGCCTTTTTAACCCTGTTGAGAACCAATTTTCATTTCATGACGAGAAGGAGCCTGGTCATGACTTTGAAAACGC---TGATATCAGGCGTCTTCGGGAAAAGGAGGGAATTCCAGAGCTCGAAGAGGAAGGGGAGAAGACTCCTGTGCATCCTGACAATGTTAGGCGCTTCCGTGATGAGAAAACTTCAGATCTCAAAGATGCAGAAAAATCTCCTATCAATGGAAGGGAGGATGATTTTGCAGAGTCAGAAGATGATTTCGATAATCCATCATCTGAACCTTTAGTGAGGGTGTTCCAGAACCGCAATGATATGCCTGTTGAAAATACTGTGATGAATCAGACACCTGAACATGTGGCTTCAGAAAAGTTAGCTTCAGAGAATAGCGTTTCTTTTTCTCGAAAACAGGAGAATAGTGATTCTTTTTCTCGAAAACAGGAGAATAGTGATTCTTTTTCTCGAAAACAGGAGAATAGTGATTCATTTTCTCGAAAACAGGAGAATAGTGATTCTCAAATTGACAGGCCAAACAATGACAAGGAGGTGCTAGACATTAGCATGTTTGAAAGTGATGATGAAAGCCCTGTGGCAAGCCCTGTAAAAGAAGTGAGATCTTCCATTGCTGCTCTTCCTATGAATGGGAAATCAAAAGAACCTTTTCATGACGTTAGAAATGGTGCGAAGGATTTGCATTCATGCATGAAAGAGATTGAAATCTTGTTTATTAGGGCATCAGATTCTGGAAAAGAAGTACCAAGGATGCTTGAAGCAGATAAAGTCAATTTCCGGCCTTTACTGCCTGAAGAAAAAGCACATGGATCAAAAGCATCAGGCTTCTTTGCGACATTCTTTGCTTGCTGCGGTGGGGAGGAAATTCCTATTCCTCAGCCTCCTCCTGAGGCTGAAGTGAAGTACCTTACCTGGCACAGATCAGTTTCTTCACTCTCTTCATCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAATATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATATGCATGGGAGAGAAAGCTTTATGATGAAGTTAAGGCTAGCGGTGCAATTTGTAGGCAATATGACGAAAAATGTAGGCAATTGAGACACCAGGAATCAAAAGCTGAAAGCCAAATGAGTATCGATAGAACCCGTGCTACTGTGAAGGATTTGCACTCCAGAATTATAGTGGCCATTCAGAGAATTGACATGATCTCTAAGAACATTGAGGATCTAAGGGACAAAGAGCTTCAACCACAGTTGGAGGAATTAATTGGGAGTTTAACTCGCATGTGGTCTACAATGCTTGAGTGTCACAAACATCAACGTGAGATTATTAAGTCCAGCAGTGGCAACACGAAGGTCTTAATTCGGTCGGAGTCACAATTTCAAGCAGCTCTACTCCTCCAGGTTGAGCTAAACACTTTATATTCAACCTTCCTGAAATGGATAGCATACCACAGATCGTACTTGCATAGCCTAAATTCATGGCTACTTAAGTGTGTGAAACCACTGAGGGGCAAGAAGAGCTCCAGGAGGAAGAAGGAAGCAGATACTCCCATAACTAAATTTGCTGTTGCACCCATGTTTAAAACCTGTGAAAGCTGGATAAAGTTATTGGATGATTTACCAACCAAGGACTTGGAAGATGCTATCAAAGGCCTCGTGGCAGATATAAACCACTCTGTGCCTCGCCAAGAAAAGCGGCGTGGTACTTCAAAGTTGACTTCCTCATTATCCCGTTCCAGTAGTACCAAGACGATTTCCTCATTTTTTCGGAATGGAGAGTTAAATGGTGAAATGTCAGAGATCCACAGAAATTCCCATACTACGGATTTACAGTCAAGTTTGGAGACATTCCTAGAGGGGTTTGCAGAGTTTTCAGATGTTTCACTGAAGAAGTATATGGAACTCGCGGTTGACATTAACAAAGCAAAGGAACAATATGAGAATGTGAAGTTAAAGAACATGGGAAAGTGAATAAGTTCGACAAAGTCAGACCAAAGGAACTAATTTCTGGAAGGAAGAATGGGCTACAATAACTCAAAGCCATTTAGAAGTGGATAAGTGGATCACCCATGTGTATATTA-GCCTGTTTAAACAATAGGTATAAATTACTGTTACTTTTCTTTTTGGGTTCAGTTTGCAAGATAGGTTTAGGTGGGAGAGGAATACTTGTAGATTTCTGGCCAATGCCATGCCGCAGAAGTGTAAATCTGAGGTTTA-GGTAAAATTAAA-CTGATGGTGGGGGATACAATATGTGTATTTATCCTGGGTATATCATTATATGAGTTTTCCCTTTTCTTCTCT----AAAAAAAGGGA] [+] EMBL AK072126 [GCACCGCTCCGCTGCTGCTGCTGCTGCTGCTCATCATCTCTCCGAAGCTTCTCATCTCCTCTCCACTCCTCCTCCTCCTCCTCCCCCTCGCCACCTCCCACGCGCTGCCACGCCGGCGACACGACCACTGCCTCCCCCCGCGCGGGCGCGCCAAGCGCCGGGATCCCGCTGCTGCGTTCCAGTTCGCGGCCGGGGCGTAGTAACCACAGCAGTGCAATACACCTTAAAATGGGGTCTACACGATCAAAGAATGAAGATGACAAGGCCATTGTCTTATGCCACGAAAGAAAACGATATGTTAGAGAAGCACTTGATGGAAGATGTGCATTCGCAGCTGCTCACTTCGCTTATATTCAATCACTGAGACACACAGGATTTGCTCTGAGAAAATTTTTGGAGCCTGAAGTGCCAACAGATTCTTCGCTGTACACATCGACATCTGCAACACCAGAACCTCCTACTATTCGGCAGAAATCGAGGAACTTATCTCCATCTATTTCACATCAGGCCAGTGACTCTTTCTCCCCAGTTCCATCCCCTTTATCTTCCGGACGGTTCCGTATCAATCATATGAAATCTGGGGGGAACCCTGTCATGACCATTGAGGAGAAGGTGCCTGTTCCTGTAACAGCAACTCTACAAACATCATCCCTTGTTCCTAAAGCTGTACATGACCTGGATGATAGTTCCACATTTGAAGCACCTCCAGGGACACCACCGTGGGACTACTTTGGCCTTTTTAACCCTGTTGAGAACCAATTTTCATTTCATGACGAGAAGGAGCCTGGTCATGACTTTGAAAACGC TGATATCAGGCGTCTTCGGGAAAAGGAGGGAATTCCAGAGCTCGAAGAGGAAGGGGAGAAGACTCCTGTGCATCCTGACAATGTTAGGCGCTTCCGTGATGAGAAAACTTCAGATCTCAAAGATGCAGAAAAATCTCCTATCAATGGAAGGGAGGATGATTTTGCAGAGTCAGAAGATGATTTCGATAATCCATCATCTGAACCTTTAGTGAGGGTGTTCCAGAACCGCAATGATATGCCTGTTGAAAATACTGTGATGAATCAGACACCTGAACATGTGGCTTCAGAAAAGTTAGCTTCAGAGAATAGCGTTTCTTTTTCTCGAAAACAGGAGAATAGTGATTCTTTTTCTCGAAAACAGGAGAATAGTGATTCTTTTTCTCGAAAACAGGAGAATAGTGATTCATTTTCTCGAAAACAGGAGAATAGTGATTCTCAAATTGACAGGCCAAACAATGACAAGGAGGTGCTAGACATTAGCATGTTTGAAAGTGATGATGAAAGCCCTGTGGCAAGCCCTGTAAAAGAAGTGAGATCTTCCATTGCTGCTCTTCCTATGAATGGGAAATCAAAAGAACCTTTTCATGACGTTAGAAATGGTGCGAAGGATTTGCATTCATGCATGAAAGAGATTGAAATCTTGTTTATTAGGGCATCAGATTCTGGAAAAGAAGTACCAAGGATGCTTGAAGCAGATAAAGTCAATTTCCGGCCTTTACTGCCTGAAGAAAAAGCACATGGATCAAAAGCATCAGGCTTCTTTGCGACATTCTTTGCTTGCTGCGGTGGGGAGGAAATTCCTATTCCTCAGCCTCCTCCTGAGGCTGAAGTGAAGTACCTTACCTGGCACAGATCAGTTTCTTCACTCTCTTCATCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAATATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATATGCATGGGAGAGAAAGCTTTATGATGAAGTTAAGGCTAGCGGTGCAATTTGTAGGCAATATGACGAAAAATGTAGGCAATTGAGACACCAGGAATCAAAAGCTGAAAGCCAAATGAGTATCGATAGAACCCGTGCTACTGTGAAGGATTTGCACTCCAGAATTATAGTGGCCATTCAGAGAATTGACATGATCTCTAAGAACATTGAGGATCTAAGGGACAAAGAGCTTCAACCACAGTTGGAGGAATTAATTGGGAGTTTAACTCGCATGTGGTCTACAATGCTTGAGTGTCACAAACATCAACGTGAGATTATTAAGTCCAGCAGTGGCAACACGAAGGTCTTAATTCGGTCGGAGTCACAATTTCAAGCAGCTCTACTCCTCCAGGTTGAGCTAAACACTTTATATTCAACCTTCCTGAAATGGATAGCATACCACAGATCGTACTTGCATAGCCTAAATTCATGGCTACTTAAGTGTGTGAAACCACTGAGGGGCAAGAAGAGCTCCAGGAGGAAGAAGGAAGCAGATACTCCCATAACTAAATTTGCTGTTGCACCCATGTTTAAAACCTGTGAAAGCTGGATAAAGTTATTGGATGATTTACCAACCAAGGACTTGGAAGATGCTATCAAAGGCCTCGTGGCAGATATAAACCACTCTGTGCCTCGCCAAGAAAAGCGGCGTGGTACTTCAAAGTTGACTTCCTCATTATCCCGTTCCAGTAGTACCAAGACGATTTCCTCATTTTCTCGGAATGGAGAGTTAAATGGTGAAATGTCAGAGATCCACAGAAATTCCCATACTACGGATTTACAGTCAAGTTTGGAGACATTCCTAGAGGGGTTTGCAGAGTTTTCAGATGTTTCACTGAAGAAGTATATGGAACTCGCGGTTGACATTAACAAAGCAAAGGAACAATATGAGAATGTGAAGTTAAAGAACATGGGAAAGTGAATAAGTTCGACAAAGTCAGACCAAAGGAACTAATTTCTGGAAGGAAGAATGGGCTACAATAACTCAAAGCCATTTAGAAGTGGATAAGTGGATCACCCATGTGTATATTA GCCTGTTTAAACAATAGGTATAAATTACTGTTACTTTTCTTTTTGGGTTCAGTTTGCAAGATAGGTTTAGGTGGGAGAGGAATACTTGTAGATTTCTGGCCAATGCCATGCCGCAGAAGTGTAAATCTGAGGTTTA GGTAAAATTAAA CTGATGGTGGGGGATACAATATGTGTATTTATCCTGGGTATATCATTATATGAGTTTT ] [+] EMBL CB640243 [ CTCCTCCCCCTCGCCACCTCCCACGCGCTGCCACGCCGGCGACACGACCACTGCCTCCCCCCGCGCGGGCGCGCCAAGCGCCGGGATCCCGCTGCTGCGTTCCAGTTCGCGGCCGGGGCGTAGTAACCACAGCAGTGCAATACACCTTAAAATGGGGTGTACACGATCAAAGAATGAAGATGACAAGGCCATTGTCTTATGCCACGAAAGAAAACGATATGTTAGAGAAGCACTTGATGGAAGATGTGCATTCGCAGCTGCTCACTTCGCTTATATTCAATCACTGAGACACACAGG ] [+] EMBL CF303316 [ TTAAAATGGGGTCTACACGATCAAAGAATGAAGATGACAAGGCCATTGTCTTATGCCACGAAAGAAAACGATATGTTAGAGAAGCACTTGATGGAAGATGTGCATTCGCAGCTGCTCACTTCGCTTATATTCAATCACTGAGACACACAGGATTTGCTCTGAGAAAATTTTTGGAGCCTGAAGTGCCAACAGATTCTTCGCTGTACACATCGACATCTGCAACACCAGAACCTCCTACTATTCGGCAGAAATCGAGGAACTTATCTCCATCTATTTCACATCAGGCCAGTGACTCTTTCTCCCCAGTTCCATCCCCTTTATCTTCCGGACGGTTCCGTATCAATCATATGAAATCTGGGGGGAACCCTGTCATGACCATTGAGGAGAAGGTGCCTGTTCCTGTAACAGCAACTCTACAAACATCATCCCTTGTTCCTAAAGCTGTACATGACCTGNATGATAGTTCCACATTTGAAGCACCTCCAGGGACACCACCGTGGGACT ] [+] EMBL CB678558 [ TCAATCCCTGAGACACACAGGATTTGCTCTGAGAAAATTTTTGGAGCCTGAAGTGCCAACAGATTCTTCGCTGTACACATCGACATCTGCAACACCAGAACCTCCTACTATTCGGCAGAAATCGAGGAACTTATCTCCATCTATTTCACATCAGGCCAGTGACTCTTTCTCCCCAGTTCCATCCCCTTTATCTTCCGGACGGTTCCGTATCAATCATATGAAATCTGGGGGGAACCCTGTCATGACCATTGAGGAGAAGGTGCCTGTTCCTGTAACAGCAACTCTACAAACATCATCCCTTGTTCCTAAAGCTGTACATGACCTGGATGATAGTTCCACATTTGAAGCACCTCCAGGGACACCACCGTGGGACTACTTTGGCCTTTTTAACCCTGTTGAGAACCAATTTTCATTTCATGACGAGAAGGAGCCTGGTCATGACTTTGAAAACGCTGATGATATCAGGCGTCTTCGGGAAAAGGAGGGAATTCCAGAGCTCGAAGAGGAAGGGGAGAAGACTCCTGTGCATCCTGACAATGTTAGGCGCTTCCGTGATGAGAAAACTTCAGATCTCAAAGATGCAGAAAAATCTCCTATCAATGGAAGGGAGGATGATTTTGCAGAGTCAGAAGATGATTTCGATAATCCATCATCTGAACCTTTAGTGAGGGTGTTCCAGAACCGCAATGATATGCCTGTTGAAAATACTGTGATGAATCAGACACCTGA ] [-] EMBL CB678559 [ GATACTCCCATAACTAAATTTGCTGTTGCACCCATGTTTAACACCTGTGAAAGCTGGATAAAGTTATTGGATGATTTACCAACCAAGGACTTGGAAGATGCTATCAAAGGCCTCGTGGCAGATATAAACCTCTCTGTGCCTCGCCAAGAAAAGCGGCGTGGTACTTCAAAGTTGACTTCTTCATTATCCCGTTCCAGTAGTACCAAGACGATTTCCTCATTTTTTTGGAATGGAGAGTTAAATTGTGAAATGTCAGAGATCCACAGAAATTCCCATATTTCGGATTTACAGTCAAGTTTGGAGACATTCTTAGAGGGGTTTGCAGAGTTTTCAGATGTTTCACTGAAGAAGTATATGGAACTGGCGGTTGACATTAACATAGCAAAGGAACAATATGAGAATGTGAAGTTAAAGAACATGGGAAAGTGAATAAGTTCGACAAAGTCAGACCAAAGGAAGTAATTTCTGGAAGGAAGAATGGGTTACAATAACTCAAAGCCATTTTGAAGTGGATAAGTGGATCACCCATGTGTATATTATGCCTGTTTAAACAATAGGTATAAATTACTGTTACTTTTCTTTTTGGGTTCAGTTTGCAAGATAGGTTTAGGTGGGAGAGGAATACTTGTAGATTTGTGGCCAATGCCATGCCGCAGAAGTGTAAATATGAGGTTTATGGTAAAATTAAATCTGATGGTGGGGGATACAATATGTGTATTTATCCTGGGTATATGATTATAAGAGTTTTCCCTTTTCTTCTCTTTTGAAAAAAAGGGA] [-] EMBL CF312049 [ AGTAGTACCAAGACGATTTCCTCATTTTTTCGGAATGGAGAGTTAAATGGTGAAATGTCAGAGATCCACAGAAATTCCCATACTACGGATTTACAGTCAAGTTTGGAGACATTCCTAGAGGGGTTTGCAGAGTTTTCAGATGTTTCACTGAAGAAGTATATGGAACTCGCGGTTGACATTAACAAAGCAAAGGAACAATATGAGAATGTGAAGTTAAAGAACATGGGAAAGTGAATAAGTTCGACAAAGTCAGACCAAAGGAACTAATTTCTGGAAGGAAGAATGGGCTACAATAACTCAAAGCCATTTAGAAGTGGATAAGTGGATCACCCATGTGTATATTA GCCTGTTTAAACAATAGGTATAAATTACTGTTACTTTTCTTTTTGGGTTCAGTTTGCAAGATAGGTTTAGGTGGGAGAGGAATACTTGTAGATTTCTGGCCAATGCCATGCCGCAGAAGTGTAAATCTGAGGTTTA GGTAAAATTAAA CTGATGGTGGGGGATACAATATGTGTATTTATCCTGGGTATATCATTATATGAGTTTTCCCTTTTCTTCTCT AAAAAAAa ] [+] EMBL CA999589 [ CGCGGTTGACATTAACAAAGCAAAGGAACAATATGAGAATGTGAAGTTAAAGAACATGGGAAAGTGAATAAGTTCGACAAAGTCAGACCAAAGGAACTAATTTCTGGAAGGAAGAATGGGCTACAATAACTCAAAGCCATTTAGAAGTGGATAAGTGGATCACCCATGTGTATATTA GCCTGTTTAAACAATAGGTATAAATTACTGTTACTTTTCTTTTTGGGTTC ] consensusID : consensus_12571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 988 fasta sequence [GTTTCTTCACTCTCTTCATCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAATATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATATGCATGGGAGAGAAAGCTTTATGATGAAGTTAAGGTACTTGTATTTTGGCTGGTCTTGTTACTAAAATATTTACTTTAGTTTATCTGTTCTAGCCAGTTTTTGAAATATTGTAAAGTAGAGAGGTAGCAATGAAGTGTTTTAGGATTGAAACTAGCCTTCTTTTTTTTTC-TTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAACATGTAATAAATAGGAACTAGCCTTTTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAATATGTAATAAATGGGACATACGAAAACCTGAATGTATTTGATAGAAGGATTGCGACTCACTATATACAACATGGCAATTGCACAAAGTGCTACTGTAATCATTCCACAGCAACCACTCAGGCTATTTAGGACAATTATGTAAGTAGTGTGAGCCAGTTACATTATTTTCTTATGTACCTACGTAATACAGCCATAAAAAAATTCACTACCGATGCCCACTTATATGTTCATTTTGCACTTTTTATTCCTATTCCCTTCACTTAATTCCTTTGTACTAATGTTCTTGAATAAATAAGCTATATCCATGTATGCTTGCCTTAATCTGTGAATTTCTATGTTGTAAACATAGTTAAATCATATAATGATGGCAAATTTGATGATTTGTTTGAAATGCTAACCTTTATATTGTCTTCAGGCTAGCGGTGCAATTTGTTGGCAATATGACGAANAATGTAGGCNATTGAGACACCAGGAATCAAAGCTGAGAGCCAAATGAGTATCGATAGAACCCGGTGTCTCGGCCT] [+] EMBL CF303608 [GTTTCTTCACTCTCTTCATCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAATATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATATGCATGGGAGAGAAAGCTTTATGATGAAGTTAAGGTACTTGTATTTTGGCTGGTCTTGTTACTAAAATATTTACTTTAGTTTATCTGTTCTAGCCAGTTTTTGAAATATTGTAAAGTAGAGAGGTAGCAATGAAGTGTTTTAGGATTGAAACTAGCCTTCTTTTTTTTTC TTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAACATGTAATAAATAGGAACTAGCCTTTTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAATATGTAATAAATGGGACATACGAAAACCTGAATGTATTTGATAGAAGGATTGCGACTCACTATATACAACATGGCA ] [+] EMBL CA761324 [ TTCTTTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAACATGTAATAAATAGGAACTAGCC TTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAATATGTAATAAATGGGACATATGAAAACCTGAATGTATTTGATAGAAGGATTGCGACTCACTATATACAACATGGCAATTGCACAAAGTGCTACTGTAATCATTCCACAGCAACCACTCAGGCTATTTAGGACAATTATGTAAGTAGTGTGAGCCAGTTACATTATTTTCTTATGTACCTACGTAATACAGCCATAAAAAAATTCACTACCGATGCCCACTTATATGTTCATTTTGCACTTTTTATTCCTATTCCCTTCACTTAATTCCTTTGTACTAATGTTCTTGAATAAATAAGCTATATCCATGTATGCTTGCCTTAATCTGTGAATTTCTATGTTGTAAACATAGTTAAATCATATAATGATGGCAAATTTGATGATTTGTTTGAAATGCTAACCTTTATATTGTCTTCAGGCTAGCGGTGCAATTTGTTGGCAATATGACGAANAATGTAGGCNATTGAGACACCAGGAATCAAAGCTGAGAGCCAAATGAGTATCGATAGAACCCGGTGTCTCGGCCT] [+] EMBL CF312048 [ TC TTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAACATGTAATAAATAGGAACTAGCCTTTTTTTTTTTTTGCAAAAAGGGAAATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAATATGTAATAAATGGGACATACGAAAACCTGAATGTATTTGATAGAAGGATTGCGACTCACTATATACAACATGGCAATTGCACAAAGTGCTACTGTAATCATTCCACAGCAACCACTCAGGCTATTTAGGACAATTATGTAAGTAGTGTGAGCCAGTTACATTATTTTCTTATGTACCTGCGTAATACAGCCATAAAAAAATTCACTACCGATGCCCACTTATATGTTCATTTTGCACTTTTTATTCCTATTCCCTTCACTTAATTCCTTTGTACTAATGTTCTTGAATAAATAAGCTATATCCGTGTATGTTTGCCTTAATCTGTGAATTTCTATGTTGTAAACATAGTTAAATCATATAATGATGGCAAATTTGATGATTTGTTTGAAATGCT ] consensusID : consensus_12571#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [ACATGGATCAAAAGCATCAGGCTTCTTTGCGACATTCTTTGCTTGCTGCGGTGGGGAGGAAATTCCTATTCCTCAGCCTCCTCCTGAGGCTGAAGTGAAGTACCTTACCTGGCACAGATCAGTTTCTTCACTCTCTTCATCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAATATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATATGCATGGGAGAGAAAGCTTTATGATGAAGTTAAGGCTAGCGGTGCAATTTGTAGGCAATATGACGAAAAATGTAGGCAATTGAGACACCAGGAATCAAAAGCTGAAAGCCAAATGAGTATCGATAGAACCCGTGCTACTGTGAAGGATTTGCACTCCAGAATTATAGTGGCCATTCAGAGAATTGACATGATCTCTAAGAACATTGAGGATCTAGGGGNACAAGAGCTTCACCACAGTGGGAAGAATTANTNGGAGTTACTCGCATGTTGTCTACAATGCCTGAGTGTCACAACATCACGTGAGAATATTAGTCAGCATGGCACAGAAGGTCTATTCNGGTNGAGTACATTTCAGCAGCTTATCTCTCAGGTGAACCTACACTTATTAACCGGCCCGAGAGGTAATTCCTCCATATCTTTCGTCCTTCCTATGGTGGCACTATGTGTCACCTAGCATAGNCTGAATAATG] [+] EMBL CA753901 [ACATGGATCAAAAGCATCAGGCTTCTTTGCGACATTCTTTGCTTGCTGCGGTGGGGAGGAAATTCCTATTCCTCAGCCTCCTCCTGAGGCTGAAGTGAAGTACCTTACCTGGCACAGATCAGTTTCTTCACTCTCTTCATCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAATATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATATGCATGGGAGAGAAAGCTTTATGATGAAGTTAAGGCTAGCGGTGCAATTTGTAGGCAATATGACGAAAAATGTAGGCAATTGAGACACCAGGAATCAAAAGCTGAAAGCCAAATGAGTATCGATAGAACCCGTGCTACTGTGAAGGATTTGCACTCCAGAATTATAGTGGCCATTCAGAGAATTGACATGATCTCTAAGAACATTGAGGATCTAGGGGNACAAGAGCTTCACCACAGTGGGAAGAATTANTNGGAGTTACTCGCATGTTGTCTACAATGCCTGAGTGTCACAACATCACGTGAGAATATTAGTCAGCATGGCACAGAAGGTCTATTCNGGTNGAGTACATTTCAGCAGCTTATCTCTCAGGTGAACCTACACTTATTAACCGGCCCGAGAGGTAATTCCTCCATATCTTTCGTCCTTCCTATGGTGGCACTATGTGTCACCTAGCATAGNCTGAATAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12571#0 GCACCGCTCCGCTGCTGCTGCTGCTGCTGCTCATCATCTCTCCGAAGCTTCTCATCTCCT 60 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CTCCACTCCTCCTCCTCCTCCTCCCCCTCGCCACCTCCCACGCGCTGCCACGCCGGCGAC 120 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 ACGACCACTGCCTCCCCCCGCGCGGGCGCGCCAAGCGCCGGGATCCCGCTGCTGCGTTCC 180 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AGTTCGCGGCCGGGGCGTAGTAACCACAGCAGTGCAATACACCTTAAAATGGGGTCTACA 240 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CGATCAAAGAATGAAGATGACAAGGCCATTGTCTTATGCCACGAAAGAAAACGATATGTT 300 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AGAGAAGCACTTGATGGAAGATGTGCATTCGCAGCTGCTCACTTCGCTTATATTCAATCA 360 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CTGAGACACACAGGATTTGCTCTGAGAAAATTTTTGGAGCCTGAAGTGCCAACAGATTCT 420 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 TCGCTGTACACATCGACATCTGCAACACCAGAACCTCCTACTATTCGGCAGAAATCGAGG 480 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AACTTATCTCCATCTATTTCACATCAGGCCAGTGACTCTTTCTCCCCAGTTCCATCCCCT 540 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 TTATCTTCCGGACGGTTCCGTATCAATCATATGAAATCTGGGGGGAACCCTGTCATGACC 600 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 ATTGAGGAGAAGGTGCCTGTTCCTGTAACAGCAACTCTACAAACATCATCCCTTGTTCCT 660 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AAAGCTGTACATGACCTGGATGATAGTTCCACATTTGAAGCACCTCCAGGGACACCACCG 720 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 TGGGACTACTTTGGCCTTTTTAACCCTGTTGAGAACCAATTTTCATTTCATGACGAGAAG 780 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GAGCCTGGTCATGACTTTGAAAACGCTGATATCAGGCGTCTTCGGGAAAAGGAGGGAATT 840 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CCAGAGCTCGAAGAGGAAGGGGAGAAGACTCCTGTGCATCCTGACAATGTTAGGCGCTTC 900 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CGTGATGAGAAAACTTCAGATCTCAAAGATGCAGAAAAATCTCCTATCAATGGAAGGGAG 960 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GATGATTTTGCAGAGTCAGAAGATGATTTCGATAATCCATCATCTGAACCTTTAGTGAGG 1020 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GTGTTCCAGAACCGCAATGATATGCCTGTTGAAAATACTGTGATGAATCAGACACCTGAA 1080 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CATGTGGCTTCAGAAAAGTTAGCTTCAGAGAATAGCGTTTCTTTTTCTCGAAAACAGGAG 1140 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AATAGTGATTCTTTTTCTCGAAAACAGGAGAATAGTGATTCTTTTTCTCGAAAACAGGAG 1200 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AATAGTGATTCATTTTCTCGAAAACAGGAGAATAGTGATTCTCAAATTGACAGGCCAAAC 1260 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AATGACAAGGAGGTGCTAGACATTAGCATGTTTGAAAGTGATGATGAAAGCCCTGTGGCA 1320 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 AGCCCTGTAAAAGAAGTGAGATCTTCCATTGCTGCTCTTCCTATGAATGGGAAATCAAAA 1380 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GAACCTTTTCATGACGTTAGAAATGGTGCGAAGGATTTGCATTCATGCATGAAAGAGATT 1440 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GAAATCTTGTTTATTAGGGCATCAGATTCTGGAAAAGAAGTACCAAGGATGCTTGAAGCA 1500 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GATAAAGTCAATTTCCGGCCTTTACTGCCTGAAGAAAAAGCACATGGATCAAAAGCATCA 1560 consensus_12571#2 -----------------------------------------ACATGGATCAAAAGCATCA 19 consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GGCTTCTTTGCGACATTCTTTGCTTGCTGCGGTGGGGAGGAAATTCCTATTCCTCAGCCT 1620 consensus_12571#2 GGCTTCTTTGCGACATTCTTTGCTTGCTGCGGTGGGGAGGAAATTCCTATTCCTCAGCCT 79 consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CCTCCTGAGGCTGAAGTGAAGTACCTTACCTGGCACAGATCAGTTTCTTCACTCTCTTCA 1680 consensus_12571#2 CCTCCTGAGGCTGAAGTGAAGTACCTTACCTGGCACAGATCAGTTTCTTCACTCTCTTCA 139 consensus_12571#1 ------------------------------------------GTTTCTTCACTCTCTTCA 18 ****************** consensus_12571#0 TCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAAT 1740 consensus_12571#2 TCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAAT 199 consensus_12571#1 TCATCTAGAATTCCTCTTGGGGTGACTTCAAAAGATGATGCTGATGGTCTCACTGGAAAT 78 ************************************************************ consensus_12571#0 ATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATAT 1800 consensus_12571#2 ATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATAT 259 consensus_12571#1 ATCTTTAGTGGTGTATACATGAATTCTGGCAGTCACGCTTCAACACTAGATAGATTATAT 138 ************************************************************ consensus_12571#0 GCATGGGAGAGAAAGCTTTATGATGAAGTTAAGG--CTAGCGGTGCAATTTGTA--GGCA 1856 consensus_12571#2 GCATGGGAGAGAAAGCTTTATGATGAAGTTAAGG--CTAGCGGTGCAATTTGTA--GGCA 315 consensus_12571#1 GCATGGGAGAGAAAGCTTTATGATGAAGTTAAGGTACTTGTATTTTGGCTGGTCTTGTTA 198 ********************************** ** * * * ** * * consensus_12571#0 ATATGACGAAAAATGTAGGCAATTGAGAC--ACCAGGAATCAAAA-GCTGAAAGCCAAAT 1913 consensus_12571#2 ATATGACGAAAAATGTAGGCAATTGAGAC--ACCAGGAATCAAAA-GCTGAAAGCCAAAT 372 consensus_12571#1 CTAAAATATTTACTTTAGTTTATCTGTTCTAGCCAGTTTTTGAAATATTGTAAAGTAGAG 258 ** * * * *** ** * **** * *** ** ** * * consensus_12571#0 GAGTATCGATAGAACCCGTGCTACTGTGAAGGATTTGCACTCCAGAATTATAGTGGCCAT 1973 consensus_12571#2 GAGTATCGATAGAACCCGTGCTACTGTGAAGGATTTGCACTCCAGAATTATAGTGGCCAT 432 consensus_12571#1 AGGTAGCAATGAAG--TGTTTTAGGATTGAA-ACTAGCCTTCTTTTTTTTTCTTTTTTTT 315 *** * ** * ** ** * * * * ** ** ** * * * consensus_12571#0 TCAGAGAATTGACATGATCTCTAAGAACATTGAGGATCTAAGGGACAAAGAGCTTCAACC 2033 consensus_12571#2 TCAGAGAATTGACATGATCTCTAAGAACATTGAGGATCTAGGGGNACAAGAGCTTCA-CC 491 consensus_12571#1 TTTGCAAAAAGGGAAA-----TAAGATCGATTTTGAACTAATTAAAACAGAACCT-ACCT 369 * * ** * * ***** * * ** *** *** * * * * consensus_12571#0 ACAGTTGGAGGAATTAATTGGGAGTTTAACTCGCATGTGGTCTACAATGCTTGAGTGTCA 2093 consensus_12571#2 ACAGTGGGAAGAATTANTNGG-AGTT--ACTCGCATGTTGTCTACAATGCCTGAGTGTCA 548 consensus_12571#1 AGAACATG--TAATAAATAGG------AACTAGCCTTTTTTTTTTTTTGCAAAAAGGGAA 421 * * * *** * * ** *** ** * * * * *** * * * consensus_12571#0 CAAACATCAACGTGAGATTATTAAGTCCAGCAGTGGCAACACGAAGGTCTTAATTCGGTC 2153 consensus_12571#2 CAA-CATCA-CGTGAGAATATTAG--TCAGCA-TGGCA-CA-GAAGGTCT--ATTCNGGT 599 consensus_12571#1 ATAAGATCGATTTTGAACTAATTAAAACAGAACCTACCTAGAATATGTAATAAATGGGAC 481 * *** * * ** * *** * * * ** * * * consensus_12571#0 GGAGTCACAATTTCAAGCAGCTCTAC----TCCTCCAGGTTGAGCTAAACA-CTTTATAT 2208 consensus_12571#2 NGAGT-ACA--TTTCAGCAGCTTA------TCTCTCAGGTGAACCTA--CA-CTT----A 643 consensus_12571#1 ATACGAAAACCTGAATGTATTTGATAGAAGGATTGCGACTCACTATATACAACATGGCAA 541 * * * * * * * * * ** ** * * consensus_12571#0 TCAACCTTCCTGAAATGGATAGCATACCACAGATCGTACTTGCATAGCCTAAATTCATGG 2268 consensus_12571#2 TTAACCGGCCCGAGA--GGTAAT-TCCTCCATATCTTTCGTCCTT--CCTA---TGGTGG 695 consensus_12571#1 TTGCACAAAGTGCTACTGTAATCATTCCACAGCAACCACTCAGGCTATTTA---GGACAA 598 * * * * * * * * ** * ** consensus_12571#0 CTACTTAAGT-GTGTGAAACCACTGAGGGGCAAGAAGAGCTCCAGGAGGAAGAAGGAAGC 2327 consensus_12571#2 C-ACT---AT-GTGTCACCTAGCATAGNCTGAATAATG---------------------- 728 consensus_12571#1 TTATGTAAGTAGTGTGAGCCAGTTACATTATTTTCTTATGTACCTACGTAATACAGCCAT 658 * * **** * consensus_12571#0 AGATACTCCCATAACTAAATTTGCTGTTGCACCCATGTTTAAAACCTGTGAAAGCTGGAT 2387 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 AAAAAAATTCACTACCGA-TGCCCACTTATATGTTCATTTTGCACTTTTTATTCCTAT-T 716 consensus_12571#0 AAAGTTATTGGATGATTTACCAACCAAGGACTTGGAAGATGCTATCAAAGGCCTCGTGGC 2447 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 CCCTTCACTTAATTCCTTTGTACTAATGTTCTTGAATAAATAAGCTATATCCATGTATGC 776 consensus_12571#0 AGATATAAACCACTCTGTGCCTCGCCAAGAAAAGCGGCGTGGTACTTCAAAGTTGACTTC 2507 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 TTGCCTTAATCTGTGAATTTCTATGTTGTAAACATAGTTAAATCATATAATGATGGCAAA 836 consensus_12571#0 CTCATTATCCCGTTCCAGTAGTACCAAGACGATTTCCTCATTTTTTCGGAATGGAGAGTT 2567 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 TTTGATGATTTGTTT--GAAATGCTAACCTTTATATTGTCTTCAGGCTAGCGGTGCAATT 894 consensus_12571#0 AAATGGTGAAATGTCAGAGATCCACAGAAATTCCCATACTACGGATTTACAGTCAAGTTT 2627 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 TGTTGGCAATATGACGAANAATGTAGGCNATTGAGACACCAGGAATCAAAGCTGAGAGCC 954 consensus_12571#0 GGAGACATTCCTAGAGGGGTTTGCAGAGTTTTCAGATGTTTCACTGAAGAAGTATATGGA 2687 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 AAATGAGTATCGATAGAACCCGGTGTCTCGGCCT-------------------------- 988 consensus_12571#0 ACTCGCGGTTGACATTAACAAAGCAAAGGAACAATATGAGAATGTGAAGTTAAAGAACAT 2747 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GGGAAAGTGAATAAGTTCGACAAAGTCAGACCAAAGGAACTAATTTCTGGAAGGAAGAAT 2807 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GGGCTACAATAACTCAAAGCCATTTAGAAGTGGATAAGTGGATCACCCATGTGTATATTA 2867 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GCCTGTTTAAACAATAGGTATAAATTACTGTTACTTTTCTTTTTGGGTTCAGTTTGCAAG 2927 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 ATAGGTTTAGGTGGGAGAGGAATACTTGTAGATTTCTGGCCAATGCCATGCCGCAGAAGT 2987 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 GTAAATCTGAGGTTTAGGTAAAATTAAACTGATGGTGGGGGATACAATATGTGTATTTAT 3047 consensus_12571#2 ------------------------------------------------------------ consensus_12571#1 ------------------------------------------------------------ consensus_12571#0 CCTGGGTATATCATTATATGAGTTTTCCCTTTTCTTCTCTAAAAAAAGGGA 3098 consensus_12571#2 --------------------------------------------------- consensus_12571#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||