cluster # 12580

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Oryza sativa
cluster # 12580 cluster # 12580 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_12580#0 length = 1971 sequences # 8

consensus_12580#1 length = 822 sequences # 3

consensusID : consensus_12580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1971
fasta sequence

                              [GAGAGACTAGAGAAAGAGGGAGACTGATTGCGCGCGCGCCTCCCTGCGCGGCTGATCGCGTATCAGCCGTCCCGACGTTTGGTAGGGTAGCAATCCAAATTGGCCCACTGTCTCCTTTCCCCCTTCGGATCAAGGCTGACGGCGCCCCGGTCCAAGTTGCGCAGTGCGACGTGGGTCGGTGGGTGCGTGTGGCCCCGCTTGCAGCGTGCCGGCCCCCGGTCCTGCCTGTCTCGCCCGTTCCCCCTGCGCCGCCCCTCGCCGGCCCGCGCACGCGCCCAAGACGCACTTGGTGGTCCGCGTCGCGCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCCTCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGTTTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAAGGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTCATCCCGCGCCGGGTCCCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGCTGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCGTGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAGGGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAGCAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAAATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGATGGATTTTTTGCTTGGATGTTTCTCAAAAGGAGGACCTTGTGGCAAACGATTCTTTCATTTGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATACCAATGCAAGATTGTGGTCTTGTACTCATGTGCTGGAGCTTTATTGTTCATTGTCTCTATTCTTTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCCAAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAAA-CTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCATATTTTCGCATGGCTATGATGTAAACGTGCCTCGAGTTTGCCCGAGTTGAGAGGTTGAGAATGCAATGTGTCCGTGTCCGTGCGTGTGAGCCGTGTGCCACCGACACGTCCTGTGGCAGTGAGCCAATATGTCTTGCCTATCGTTCTGTGGCTGAGCCTCAGCAGGCTTGTTACATTCCTCACACTGAGGACACCTTGATAAGCG-CATATGCCCATTGT]

[+] EMBL AK102414             [GAGAGACTAGAGAAAGAGGGAGACTGATTGCGCGCGCGCCTCCCTGCGCGGCTGATCGCGTATCAGCCGTCCCGACGTTTGGTAGGGTAGCAATCCAAATTGGCCCACTGTCTCCTTTCCCCCTTCGGATCAAGGCTGACGGCGCCCCGGTCCAAGTTGCGCAGTGCGACGTGGGTCGGTGGGTGCGTGTGGCCCCGCTTGCAGCGTGCCGGCCCCCGGTCCTGCCTGTCTCGCCCGTTCCCCCTGCGCCGCCCCTCGCCGGCCCGCGCACGCGCCCAAGACGCACTTGGTGGTCCGCGTCGCGCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCCTCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGTTTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAAGGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTCATCCCGCGCCGGGTCCCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGCTGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCGTGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAGGGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAGCAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAAATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGATGGATTTTTTGCTTGGATGTTTCTCAAAAGGAGGACCTTGTGGCAAACGATTCTTTCATTTGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATACCAATGCAAGATTGTGGTCTTGTACTCATGTGCTGGAGCTTTATTGTTCATTGTCTCTATTCTTTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCCAAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAAA CTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGG                                                                                                                                                                                                                                       ]
[+] EMBL AK060832             [                                                                                                                                                                  AGTGCGACGTGGGTCGGTGGGTGCGTGTGGCCCCGCTTGCAGCGTGCCGGCCCCCGGTCCTGCCTGTCTCGCCCGTTCCCCCTGCGCCGCCCCTCGCCGGCCCGCGCACGCGCCCAAGACGCACTTGGTGGTCCGCGTCGCGCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCCTCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGTTTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAAGGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTCATCCCGCGCCGGGTCCCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGCTGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCGTGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAGGGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAGCAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAAATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGATGGATTTTTTGCTTGGATGTTTCTCAAAAGGAGGACCTTGTGGCAAACGATTCTTTCATTTGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATACCAATGCAAGATTGTGGTCTTGTACTCATGTGCTGGAGCTTTATTGTTCATTGTCTCTATTCTTTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCCAAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAAA CTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAA                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB684479             [                                                                                                                                                                                                CCCCCCTTGCAGCGTGCCGGCCCCCGGTCCTGCCTGTCTCGCCCGTTCCCCCTGCGCCGCCCCTCGCCGGCCCGCGCACGCGCCCAAGACGCACTTGGTGGTCCGCGTCGCGCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCCTCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGTTTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAAGGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTCATCCCGCGCCGGGTCCCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGCTGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCGTGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAGGGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAGCAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAAATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGATGGATTTTTTGCTTGGATGTTTCTCAAAAGGAGGACCTTGTGGCAAACGATTCTTTCATTTGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB674874             [                                                                                                                                                                                                                                                           CCCCTCGCCTTACAGAGCACGCGCCCAAGACGCACTTGGTGGTCCGCGTCGCGCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCCTCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGTTTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAAGGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTCATCCCGCGCCGGGTCTCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGCTGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCGTGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAGGGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAGCAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAAATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGATGGATTTTTTGCTTGGATGTTTCTCAAAACGAGGACCTTGTGGCAAACGATTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB654285             [                                                                                                                                                                                                                                                                                                               GCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCCTCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGTTTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAAGGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTCATCCCGCGCCGGGTCCCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGCTGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCGTGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAGGGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAGCAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAAATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGATGGATTTTTTGCTTGGATGTTTCTCAAAAGGAGGACCTTGTGGCAAACGATTCTTTCATTTGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATACCAATGCAAGATTGTGGTCTTGTACTCATGTGCTGGAGCTTTATTGTTCATTGTCTCTATTCTTTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB674875             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGATTCTTTCATTTGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATACCAATGCAAGATTGTGGTCTTGTACTCATGTGCTGGAGCTTTATTGTTCATTGTCTCTATTCTTTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCCAAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAAA CTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTC                                                                                                                                                                                                                                    ]
[-] EMBL CB684480             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAAA CTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCATATTTTCGCATGGCTATGATGTAAACGTGCCTCGAGTTTGCCCGAGTTGAGAGGTTGAGAATGCAATGTGTCCGTGTCCGTGCGTGTGAGCCGTGTGCCACCGACACGTCCTGTGGCAGTGAGCCAATATGTCTTGCCTATCGTTCTGTGGCTGAGCCTCAGCAGGCTTGTTACATTCCTCACACTGAGGACACCTTGATAAGCG CATATGCCCATTGT]
[-] EMBL CB617900             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGTTAGGGCGAGGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTTTGGGATGATGGAAAAACATACAGGGTCTAATGCATCAGAAATCTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATTCCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGCCTTATAAATTCTAAAGCTATGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTTTCAAAGCATATTTTCGCATGGATATGATGTAAACGTGCCTTGAGTTTGCCCGAGTTGAGAGGTTGAGAATGCAATGTGTCCGTGTCCGTGCGTGTGAGCCGTGTGCCACCGTCACGTCCTGTGGCAGTGAGCCAAAATGTCTTGCCTATCGTTATGTGGCTGAGCCTCAGCAGGTTTGAAGGATTCCTCACACTGATGACACCTTGATAAGCGCCATAaaagag    ]




>consensus_12580#0
GAGAGACTAGAGAAAGAGGGAGACTGATTGCGCGCGCGCCTCCCTGCGCGGCTGATCGCG
TATCAGCCGTCCCGACGTTTGGTAGGGTAGCAATCCAAATTGGCCCACTGTCTCCTTTCC
CCCTTCGGATCAAGGCTGACGGCGCCCCGGTCCAAGTTGCGCAGTGCGACGTGGGTCGGT
GGGTGCGTGTGGCCCCGCTTGCAGCGTGCCGGCCCCCGGTCCTGCCTGTCTCGCCCGTTC
CCCCTGCGCCGCCCCTCGCCGGCCCGCGCACGCGCCCAAGACGCACTTGGTGGTCCGCGT
CGCGCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCC
TCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGT
TTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAA
GGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTC
ATCCCGCGCCGGGTCCCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGC
TGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCG
TGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAG
GGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAG
CAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAA
ATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGA
TGGATTTTTTGCTTGGATGTTTCTCAAAAGGAGGACCTTGTGGCAAACGATTCTTTCATT
TGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATACCAATGCAA
GATTGTGGTCTTGTACTCATGTGCTGGAGCTTTATTGTTCATTGTCTCTATTCTTTTGTT
AAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCC
AAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGA
TGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGT
GATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTACCAGAAGAA
GGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGAT
GATGGAAAAACATACTGGGACTAATGCATCAGAAACTAGCAATCACACCAGTGGAACTGG
GAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGA
TCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAAC
AAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTAC
TTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCA
GGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAG
GTTCTCAAAGCATATTTTCGCATGGCTATGATGTAAACGTGCCTCGAGTTTGCCCGAGTT
GAGAGGTTGAGAATGCAATGTGTCCGTGTCCGTGCGTGTGAGCCGTGTGCCACCGACACG
TCCTGTGGCAGTGAGCCAATATGTCTTGCCTATCGTTCTGTGGCTGAGCCTCAGCAGGCT
TGTTACATTCCTCACACTGAGGACACCTTGATAAGCGCATATGCCCATTGT

consensusID : consensus_12580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 822
fasta sequence

                              [TTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCCAAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTGGTGTCGAGGCACTTTATTTTCCCCTGGATAATTTGATTTCTTGATCTAAGTGCTAAATTGAAGTCTTCCACAGCCCATTTCCAGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAAACTAGCAATCACACCAGTGGAACTG--GGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCATATTTTTGCATGGCTATGATGTAAACGTGCCTCGAGTTTGCCCGAAAAAAAAAAAAAA]

[-] EMBL CB654286             [TTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCCAAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTGGTGTCGAGGCACTTTATTTTCCCCTGGATAATTTGATTTCTTGATCTAAGTGCTAAATTGAAGTCTTCCACAGCCCATTTCCAGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAAACTAGCAATCACACCAGTGGAACTG  GGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCA                                                          ]
[-] EMBL CF318252             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          aTGGAA TGAAGGGGTAGTCCTGTCCCTCCCAGTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATTAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTTTAAAGCTTTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATAAAAATAGGTTTCTGACAAGTTCAAATTCAGGGTGGTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCGGTATTACGAGGTTTTCAAAGCATATTTTTGCATGGCTATGATGTAAACGTGCCTCGAGTTTGCCCGAAAAAAAAAAAAAA]
[+] EMBL CF318251             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCCCACTAATGAAGGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACATATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCATATTTTCGCATGGCTATGATGTAAACGTGCCTCGAGTTTGCCCGANNAAAAAAAAAA ]




>consensus_12580#1
TTTGTTAAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTT
CTTTCCAAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGA
GAAGGATGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGT
ATTGGTGATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTGGTG
TCGAGGCACTTTATTTTCCCCTGGATAATTTGATTTCTTGATCTAAGTGCTAAATTGAAG
TCTTCCACAGCCCATTTCCAGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTT
GAGTGGTCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCA
TCAGAAACTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAA
GGGAATACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAA
GATGGTGATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTT
ATAAACTCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATC
ATATAGATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCAT
TCACATATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCATATTTTTGCATGGCTA
TGATGTAAACGTGCCTCGAGTTTGCCCGAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12580#0      GAGAGACTAGAGAAAGAGGGAGACTGATTGCGCGCGCGCCTCCCTGCGCGGCTGATCGCG 60
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      TATCAGCCGTCCCGACGTTTGGTAGGGTAGCAATCCAAATTGGCCCACTGTCTCCTTTCC 120
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      CCCTTCGGATCAAGGCTGACGGCGCCCCGGTCCAAGTTGCGCAGTGCGACGTGGGTCGGT 180
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      GGGTGCGTGTGGCCCCGCTTGCAGCGTGCCGGCCCCCGGTCCTGCCTGTCTCGCCCGTTC 240
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      CCCCTGCGCCGCCCCTCGCCGGCCCGCGCACGCGCCCAAGACGCACTTGGTGGTCCGCGT 300
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      CGCGCTCGTCTCTCGCGTGCGCTGCGTCTCCCCTCCTACCCCTGATTCGCACGGAATTCC 360
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      TCGAATCGCCCGTGAGATCCGCTTGATTCGATCTCCGATTCAGGCCCCGGGGTCTAGGGT 420
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      TTTCGCCGCCGTTCGAGCGGAGCAGAGCGGGGCGTGGGAGATGGCGGGGAAGGGAGCCAA 480
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      GGCGACGGCGGCCAAGTCGGCGGAGAAGGAAAAGGGGAAGAAGGCCCCCGTATCCCGCTC 540
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      ATCCCGCGCCGGGTCCCAGGAGAAGCCAGCTCCAAACAAGGATGTTTACCAACTATTTGC 600
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      TGAGAAGGTTAGGGATAACAAGCAGCTGGAATCAAGATGGGCAATTATGCAAGAAACTCG 660
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      TGTTGAGTATTTCCGTGGAAAAGATTTTACTACCTTCATGAGGAATCATCCAGAAGTTAG 720
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      GGAAATTTTAGGGCCAGATAAAGATTTAGAAGTGGAAGACATTGTTAACACTCTGCTGAG 780
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      CAAGAACCTTGTGATAAGGTGTGACCGAGTTTGGAAAACTGTCAGACCAGGAAAGAAGAA 840
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      ATTGTCATCGTGGCCTGCACATTTGGAGATACATCGTGAACAAGTGTTCACTGAGAATGA 900
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      TGGATTTTTTGCTTGGATGTTTCTCAAAAGGAGGACCTTGTGGCAAACGATTCTTTCATT 960
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      TGTTTGGCCTCTCTTTGCTTTGGCAGTTTGCTTATTTCCAGTTTACCCATACCAATGCAA 1020
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      GATTGTGGTCTTGTACTCATGTGCTGGAGCTTTATTGTTCATTGTCTCTATTCTTTTGTT 1080
consensus_12580#1      ------------------------------------------------------TTTGTT 6
                                                                             ******

consensus_12580#0      AAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCC 1140
consensus_12580#1      AAGAGCTGCTATCTTTGGCATACTATGGGTACTCCTTGGGAAACGTGTGTGGTTCTTTCC 66
                       ************************************************************

consensus_12580#0      AAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGA 1200
consensus_12580#1      AAATATAAATGCCGAAGAGACAACATTTAGAGAACTTGTTCGGTTTTGGCCCGAGAAGGA 126
                       ************************************************************

consensus_12580#0      TGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGT 1260
consensus_12580#1      TGAGGGAGAGCGACCAAAGTGGACATCAAGACTCTTCTATGCCACTGTTGCTGTATTGGT 186
                       ************************************************************

consensus_12580#0      GATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGT---------- 1310
consensus_12580#1      GATATTACTGCTCAGGCACCATGCTCCAGATGAAGCAGCTAGGGCAAGGTGGTGTCGAGG 246
                       **************************************************          

consensus_12580#0      ------------------------------------------------------------
consensus_12580#1      CACTTTATTTTCCCCTGGATAATTTGATTTCTTGATCTAAGTGCTAAATTGAAGTCTTCC 306
                                                                                   

consensus_12580#0      ----------------ACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGG 1354
consensus_12580#1      ACAGCCCATTTCCAGTACCAGAAGAAGGTTTCGAACATAATTGATGATGTTCTTGAGTGG 366
                                       ********************************************

consensus_12580#0      TCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAA 1414
consensus_12580#1      TCTCCAAAGTTAGCTTTGTCTGGGATGATGGAAAAACATACTGGGACTAATGCATCAGAA 426
                       ************************************************************

consensus_12580#0      ACTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAAT 1474
consensus_12580#1      ACTAGCAATCACACCAGTGGAACTGGGAGTAGTCCTGTCCCTCCCACTAATGAAGGGAAT 486
                       ************************************************************

consensus_12580#0      ACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGT 1534
consensus_12580#1      ACCGCAAAAGCAGACCCAGATATGGATCGTCAGACGAACTCAGATAAAGTCCAAGATGGT 546
                       ************************************************************

consensus_12580#0      GATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAAC 1594
consensus_12580#1      GATGAGTATGGTGATGACATGAGAACAAGATTTAGTGAAGTTTAGAATCGACTTATAAAC 606
                       ************************************************************

consensus_12580#0      TCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAG 1654
consensus_12580#1      TCTAAAGCTCTGGTAATTTGGAGTACTTACCCTCGGGGATTTATCTGCAGAATCATATAG 666
                       ************************************************************

consensus_12580#0      ATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACAT 1714
consensus_12580#1      ATAGGTTACTGACAAGTTCAAATTCAGGGTGCTCATGTTTTGACCATGTTTCATTCACAT 726
                       ************************************************************

consensus_12580#0      ATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCATATTTTCGCATGGCTATGATGT 1774
consensus_12580#1      ATTGCCAGCAATGGCTGTATTACGAGGTTCTCAAAGCATATTTTTGCATGGCTATGATGT 786
                       ******************************************** ***************

consensus_12580#0      AAACGTGCCTCGAGTTTGCCCGAGTTGAGAGGTTGAGAATGCAATGTGTCCGTGTCCGTG 1834
consensus_12580#1      AAACGTGCCTCGAGTTTGCCCGAAAAAAAAAAAAAA------------------------ 822
                       ***********************    * *     *                        

consensus_12580#0      CGTGTGAGCCGTGTGCCACCGACACGTCCTGTGGCAGTGAGCCAATATGTCTTGCCTATC 1894
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      GTTCTGTGGCTGAGCCTCAGCAGGCTTGTTACATTCCTCACACTGAGGACACCTTGATAA 1954
consensus_12580#1      ------------------------------------------------------------
                                                                                   

consensus_12580#0      GCGCATATGCCCATTGT 1971
consensus_12580#1      -----------------