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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 753 fasta sequence
[GAGAACTAGTCTCGAGTTTTTTTT--TTTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTGCACAAGGAATGTACGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGCGTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAGTCCTAAACAGATCTTAGGAGACAANACCATATTTTACATTTGCATTTCGACTAGCAGATAGTTG-ACAAAAATG-TATGTATCTGCTCTTGC-ATAATGG-TCAGG-GAACACCA-TTAGTTTGTTG--AATGAC-ACNAACC-CTCTTG--AGAAAGAAGAAAAAGAAAGGACATTTTTGGGGTTTTAACCGGACCTCAAACGGAGGAAGGTTTTTGCTTTATTGGGCTTGCTCT]
[+] EMBL AW155305 [GAGAACTAGTCTCGAGTTTTTTTT TTTTTTTTTTGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTGCACAAGGAATGTACGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGCGTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAGTCCTAAACAGATCTTAGGAGACAANACCATATTTTACATTTGCATTTCGACTAGCAGATAGTTG ACAAAAATG TATGTATCTGCTCTTGC ATAATGG TCAGG GAACACCA TTAGTTTGTTG AATGAC ACNAACC CTCTTG AGAAAGAAGAAAAAGAAAGGACATTTTTGGGGTTTTAACCGGACCTCAAACGGAGGAAGGTTTTTGCTTTATTGGGCTTGCTCT]
[-] EMBL AU093998 [ TTTTTTTT TATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTGCACAAGGAATGTACGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGCGTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAGTCCTAAACAGATCTTAGGAGACAAAACCATATTTTACATTTGCATTTCGACTAGCAGATAGTTGTACAAAAATGTTATGTATCTGCTCTGGCAATTATGGTTCAGGAGACCACCATTTAGTTTGTAGGAAATGACAACAGACCACTACTGAAAGAAAGAA AGAAAGAAAGaagtgaa ]
[+] EMBL OSR11681A [ tttttttTTTTTTTTGGTATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGA ]
[-] EMBL AU164943 [ TTN TTTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGAC ]
consensusID : consensus_12599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 658 fasta sequence
[TTAAACAAAAAGAATGGTATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC-AAGTGAT-GCGACTCAAGATAA-GC-AAGAA-TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGGCTCCAGGAACTTCATCTCTATATCAAGGGGCCAAACCTTGAGG-CCAG-AG-CGCAG-GG-GCCTG-TGCCCGGGCACGATGCACTCCGGCCCGGCCGCCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGACGGCGAGGGCGTAGGCGGAATAATCGTCCTGCGCGACGCGGAGGACGGGGGCGTGGTGGATGCGCGGGACGGGGCGGATCC]
[-] EMBL AU093979 [TTAAACAAAAAGAATGGTATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCNAAGTGATGGCGACTCAAGATAAGGCAAAGAATTGNGGGTTgtn ]
[-] EMBL BI795808 [ tTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAG TTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGG TCCAGGAACTTCATCTCTATATCAAGGGGCCAAA CTTGAGG CCAG AG CGCAG GG GCCTG TGCCCGGGCACGATGCACTCCGG CCGG CG CTCCA CATAG CTCCATGG CAA CCCTCCCCTATtg ]
[-] EMBL AU058056 [ GTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGNCCATAACGNTGCATGACTTTGCCATGGACTTTTTCATGGAATGNAGGTCCNG CCAAATGGCTTCAGGGACTTCATCTCTATATCAA GGGCCAAACC ]
[-] EMBL AU163385 [ GTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGGCTCCAGGGACTTCATCTCTATATCAAGGGGCCAA ]
[-] EMBL CF325677 [ GCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGGCTCCAGGAACTTCATCTCTATATCAAGGGGCCAAACCTTGAGGCCCAGCAGCCGCAGCGGCGCCTGCTGCCCGGGCACGATGCACTCCGGCCCGGCCGCCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGACGGCGAGGGCGTAGGCGGAATAATCGTCCTGCGCGACGCGGAGGACGGGGGCGTGGTGGATGCGCGGGACGGGGCGGATCC]
[-] EMBL CF324543 [ CGGCCCGGCCGCCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGAC ]
consensusID : consensus_12599#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[GCCCCTTGATATAGAGATGAAGTTCCTGGAGCCATTTGGACGGGAACTACATTCCATGAAAAAGGTAATGCAAGCTTGAGGCTTTCCATCTGTTGTTCTGTTGCAGCTGCACGATTGGTTTGAAGTATAAAGTACTTGAAACCAACTCAAGCCTTGTGTGCTAGTAATACTTAATCAGTCTTTAGCCATCCTTAAGACCTGTTTGGAAATTACAATGTCCCGGAGAAAGATAGGCGTTGTGTTTGCTATCCTATCCGTAGACTTTCCTGTAGACACTCTTAAAGTCATCCAAGCCTGTTGCCTTTTTTCACTTTCAACATTAGTGCTGCTGGGTAACATGCACTTTGCTTCCAATGACCTGTATATTGTGACCAGAGGGNCCACCCATGTATGCCCTGGGATTCCNACATTTCAATNGCAGGTTGAGGCAATAGACCCAATA]
[+] EMBL C72547 [GCCCCTTGATATAGAGATGAAGTTCCTGGAGCCATTTGGACGGGAACTACATTCCATGAAAAAGGTAATGCAAGCTTGAGGCTTTCCATCTGTTGTTCTGTTGCAGCTGCACGATTGGTTTGAAGTATAAAGTACTTGAAACCAACTCAAGCCTTGTGTGCTAGTAATACTTAATCAGTCTTTAGCCATCCTTAAGACCTGTTTGGAAATTACAATGTCCCGGAGAAAGATAGGCGTTGTGTTTGCTATCCTATCCGTAGACTTTCCTGTAGACACTCTTAAAGTCATCCAAGCCTGTTGCCTTTTTTCACTTTCAACATTAGTGCTGCTGGGTAACATGCACTTTGCTTCCAATGACCTGTATATTGTGACCAGAGGGNCCACCCATGTATGCCCTGGGATTCCNACATTTCAATNGCAGGTTGAGGCAATAGACCCAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12599#0 GAGAACTAGTCTCGAGTTTTTTTTTTTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCA 60
consensus_12599#1 -----TTAAACAAAAAGAATGGTATTT--TGTATGATTTTTTTTCTTCGTTTTCCTTGCA 53
consensus_12599#2 ------------------------------------------------------------
consensus_12599#0 ACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGT 120
consensus_12599#1 ACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGT 113
consensus_12599#2 ----------------------------------------------GCCCCTTGATATAG 14
* * * * *
consensus_12599#0 AGACTAACTCGGTGGAGGCAGCC---CTGGATCCATACATAGTAGTACTAGCTAATCGTT 177
consensus_12599#1 AGACTAACTCGGTGGAGGCAGCC---CTGGATCCATACATAGTAGTACTAGCTAATCGTT 170
consensus_12599#2 AGATGAAGTTCCTGGAGCCATTTGGACGGGAACTACATTCCATGAAAAAGGTAATGCAAG 74
*** ** * ***** ** * *** * * * * * * * *
consensus_12599#0 ACTGTG-TTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGA 236
consensus_12599#1 ACTGTG-TTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGA 229
consensus_12599#2 CTTGAGGCTTTCCATCTGTTGTTCTGTTGCAGCTGCACGATTGGTTTGAAGTATA-AAGT 133
** * * ** * * **** ** * * * * ** ***
consensus_12599#0 ATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGC 296
consensus_12599#1 ATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGC 289
consensus_12599#2 ACTTGAAACCAACTCAAGCCTTGTGTGCTAGTAATACTTAATCAGTCTTTAGCCATCCTT 193
* ** * ** * * * * *** * *** * * **
consensus_12599#0 AAGAGCCGT--GGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTA 354
consensus_12599#1 AAGAGCCGT--GGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTA 347
consensus_12599#2 AAGACCTGTTTGGAAATTACAATGTCC-----CGGAGAAAGATA---GGCGTTGTGTTTG 245
**** * ** *** * ** ** * **** * ** ** ** * *
consensus_12599#0 CTTATTTGAC-ATAGATGAGTCCATA-ACGCTGCATGACTTGTCCATGAACTGCA-CAAG 411
consensus_12599#1 CTTATTTGAC-ATAGATGAGTCCATA-ACGCTGCATGACTTGTCCATGAACTTTTTCATG 405
consensus_12599#2 CTATCCTATCCGTAGACTTTCCTGTAGACACTCTTAAAGTCATCCAAGCCTGTTGCCTTT 305
** * * **** * ** ** ** * * **** * *
consensus_12599#0 GAATGTA--CGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGC 469
consensus_12599#1 GAATGTAGTTCCCGTCCAAATGGCTCCAGGAACTTCATCTCTATATCAAGGGGCCAAACC 465
consensus_12599#2 TTTCACTTTCAACATTAGTGCTGCTGGGTAACATGCACTTTGCTTCCAATGACCTGTATA 365
* * * ** * * **
consensus_12599#0 GTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAG 529
consensus_12599#1 TTGA--GGCCAGAGCGC--AGGGGCCTGTGCCCGGGCACGATGCACTCCGGCCCG-GCCG 520
consensus_12599#2 TTGT--GACCAGAGGGNCCACCCATGTATGCCCTGGGATTCCNACATTTCAATNGCA-GG 422
** * * * * * * *
consensus_12599#0 TCCTAAACAGATCTTAGGAGACAANACCATATTTTAC---ATTTGCATTTCGACTAGCAG 586
consensus_12599#1 CCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGACGG 580
consensus_12599#2 TTGAGGCAATAGACCCAATA---------------------------------------- 442
* *
consensus_12599#0 ATAGTTGACAAAAATGTATGTATCTGCTCTTGCATAATGGTCA--GGGAACACCATTAGT 644
consensus_12599#1 CGAG--GGCGTAGGCGGAATAATCGTCCTGCGCGACGCGGAGGACGGGGGCGTGGTGGAT 638
consensus_12599#2 ------------------------------------------------------------
consensus_12599#0 TTGTTGAATGACACNAACCCTCTTGAGAAAGAAGAAAAAGAAAGGACATTTTTGGGGTTT 704
consensus_12599#1 GCGCGGGACGGGGCGGATCC---------------------------------------- 658
consensus_12599#2 ------------------------------------------------------------
consensus_12599#0 TAACCGGACCTCAAACGGAGGAAGGTTTTTGCTTTATTGGGCTTGCTCT 753
consensus_12599#1 -------------------------------------------------
consensus_12599#2 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||