These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 753 fasta sequence [GAGAACTAGTCTCGAGTTTTTTTT--TTTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTGCACAAGGAATGTACGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGCGTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAGTCCTAAACAGATCTTAGGAGACAANACCATATTTTACATTTGCATTTCGACTAGCAGATAGTTG-ACAAAAATG-TATGTATCTGCTCTTGC-ATAATGG-TCAGG-GAACACCA-TTAGTTTGTTG--AATGAC-ACNAACC-CTCTTG--AGAAAGAAGAAAAAGAAAGGACATTTTTGGGGTTTTAACCGGACCTCAAACGGAGGAAGGTTTTTGCTTTATTGGGCTTGCTCT] [+] EMBL AW155305 [GAGAACTAGTCTCGAGTTTTTTTT TTTTTTTTTTGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTGCACAAGGAATGTACGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGCGTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAGTCCTAAACAGATCTTAGGAGACAANACCATATTTTACATTTGCATTTCGACTAGCAGATAGTTG ACAAAAATG TATGTATCTGCTCTTGC ATAATGG TCAGG GAACACCA TTAGTTTGTTG AATGAC ACNAACC CTCTTG AGAAAGAAGAAAAAGAAAGGACATTTTTGGGGTTTTAACCGGACCTCAAACGGAGGAAGGTTTTTGCTTTATTGGGCTTGCTCT] [-] EMBL AU093998 [ TTTTTTTT TATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTGCACAAGGAATGTACGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGCGTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAGTCCTAAACAGATCTTAGGAGACAAAACCATATTTTACATTTGCATTTCGACTAGCAGATAGTTGTACAAAAATGTTATGTATCTGCTCTGGCAATTATGGTTCAGGAGACCACCATTTAGTTTGTAGGAAATGACAACAGACCACTACTGAAAGAAAGAA AGAAAGAAAGaagtgaa ] [+] EMBL OSR11681A [ tttttttTTTTTTTTGGTATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGA ] [-] EMBL AU164943 [ TTN TTTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGAATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGAC ] consensusID : consensus_12599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 658 fasta sequence [TTAAACAAAAAGAATGGTATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC-AAGTGAT-GCGACTCAAGATAA-GC-AAGAA-TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGGCTCCAGGAACTTCATCTCTATATCAAGGGGCCAAACCTTGAGG-CCAG-AG-CGCAG-GG-GCCTG-TGCCCGGGCACGATGCACTCCGGCCCGGCCGCCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGACGGCGAGGGCGTAGGCGGAATAATCGTCCTGCGCGACGCGGAGGACGGGGGCGTGGTGGATGCGCGGGACGGGGCGGATCC] [-] EMBL AU093979 [TTAAACAAAAAGAATGGTATTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATCNAAGTGATGGCGACTCAAGATAAGGCAAAGAATTGNGGGTTgtn ] [-] EMBL BI795808 [ tTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAG TTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGG TCCAGGAACTTCATCTCTATATCAAGGGGCCAAA CTTGAGG CCAG AG CGCAG GG GCCTG TGCCCGGGCACGATGCACTCCGG CCGG CG CTCCA CATAG CTCCATGG CAA CCCTCCCCTATtg ] [-] EMBL AU058056 [ GTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGNCCATAACGNTGCATGACTTTGCCATGGACTTTTTCATGGAATGNAGGTCCNG CCAAATGGCTTCAGGGACTTCATCTCTATATCAA GGGCCAAACC ] [-] EMBL AU163385 [ GTATGATTTTTTTTCTTCGTTTTCCTTGCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGGCTCCAGGGACTTCATCTCTATATCAAGGGGCCAA ] [-] EMBL CF325677 [ GCAACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGTAGACTAACTCGGTGGAGGCAGCCCTGGATCCATACATAGTAGTACTAGCTAATCGTTACTGTGTTCTCGGCGCTATATCTTGTTCCATC AAGTGAT GCGACTCAAGATAA GC AAGAA TGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGCAAGAGCCGTGGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTACTTATTTGACATAGATGAGTCCATAACGCTGCATGACTTGTCCATGAACTTTTTCATGGAATGTAGTTCCCGTCCAAATGGCTCCAGGAACTTCATCTCTATATCAAGGGGCCAAACCTTGAGGCCCAGCAGCCGCAGCGGCGCCTGCTGCCCGGGCACGATGCACTCCGGCCCGGCCGCCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGACGGCGAGGGCGTAGGCGGAATAATCGTCCTGCGCGACGCGGAGGACGGGGGCGTGGTGGATGCGCGGGACGGGGCGGATCC] [-] EMBL CF324543 [ CGGCCCGGCCGCCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGAC ] consensusID : consensus_12599#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GCCCCTTGATATAGAGATGAAGTTCCTGGAGCCATTTGGACGGGAACTACATTCCATGAAAAAGGTAATGCAAGCTTGAGGCTTTCCATCTGTTGTTCTGTTGCAGCTGCACGATTGGTTTGAAGTATAAAGTACTTGAAACCAACTCAAGCCTTGTGTGCTAGTAATACTTAATCAGTCTTTAGCCATCCTTAAGACCTGTTTGGAAATTACAATGTCCCGGAGAAAGATAGGCGTTGTGTTTGCTATCCTATCCGTAGACTTTCCTGTAGACACTCTTAAAGTCATCCAAGCCTGTTGCCTTTTTTCACTTTCAACATTAGTGCTGCTGGGTAACATGCACTTTGCTTCCAATGACCTGTATATTGTGACCAGAGGGNCCACCCATGTATGCCCTGGGATTCCNACATTTCAATNGCAGGTTGAGGCAATAGACCCAATA] [+] EMBL C72547 [GCCCCTTGATATAGAGATGAAGTTCCTGGAGCCATTTGGACGGGAACTACATTCCATGAAAAAGGTAATGCAAGCTTGAGGCTTTCCATCTGTTGTTCTGTTGCAGCTGCACGATTGGTTTGAAGTATAAAGTACTTGAAACCAACTCAAGCCTTGTGTGCTAGTAATACTTAATCAGTCTTTAGCCATCCTTAAGACCTGTTTGGAAATTACAATGTCCCGGAGAAAGATAGGCGTTGTGTTTGCTATCCTATCCGTAGACTTTCCTGTAGACACTCTTAAAGTCATCCAAGCCTGTTGCCTTTTTTCACTTTCAACATTAGTGCTGCTGGGTAACATGCACTTTGCTTCCAATGACCTGTATATTGTGACCAGAGGGNCCACCCATGTATGCCCTGGGATTCCNACATTTCAATNGCAGGTTGAGGCAATAGACCCAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12599#0 GAGAACTAGTCTCGAGTTTTTTTTTTTTTTGTATGATTTTTTTTCTTCGTTTTCCTTGCA 60 consensus_12599#1 -----TTAAACAAAAAGAATGGTATTT--TGTATGATTTTTTTTCTTCGTTTTCCTTGCA 53 consensus_12599#2 ------------------------------------------------------------ consensus_12599#0 ACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGT 120 consensus_12599#1 ACTCAGCATTATATTCTCAAGTCACAACCGTTACATGAATACAATAAACGCATAACACGT 113 consensus_12599#2 ----------------------------------------------GCCCCTTGATATAG 14 * * * * * consensus_12599#0 AGACTAACTCGGTGGAGGCAGCC---CTGGATCCATACATAGTAGTACTAGCTAATCGTT 177 consensus_12599#1 AGACTAACTCGGTGGAGGCAGCC---CTGGATCCATACATAGTAGTACTAGCTAATCGTT 170 consensus_12599#2 AGATGAAGTTCCTGGAGCCATTTGGACGGGAACTACATTCCATGAAAAAGGTAATGCAAG 74 *** ** * ***** ** * *** * * * * * * * * consensus_12599#0 ACTGTG-TTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGA 236 consensus_12599#1 ACTGTG-TTCTCGGCGCTATATCTTGTTCCATCAAGTGATGCGACTCAAGATAAGCAAGA 229 consensus_12599#2 CTTGAGGCTTTCCATCTGTTGTTCTGTTGCAGCTGCACGATTGGTTTGAAGTATA-AAGT 133 ** * * ** * * **** ** * * * * ** *** consensus_12599#0 ATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGC 296 consensus_12599#1 ATGTGGTTTCTCTCCATGGGCTCTTCAAGTTTTGTACCTTTCTGGTCCTGTAACTTCAGC 289 consensus_12599#2 ACTTGAAACCAACTCAAGCCTTGTGTGCTAGTAATACTTAATCAGTCTTTAGCCATCCTT 193 * ** * ** * * * * *** * *** * * ** consensus_12599#0 AAGAGCCGT--GGATACAGCATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTA 354 consensus_12599#1 AAGAGCCGT--GGATACAACATTGGCTAGTAATGGAGGGAACTAATCAGCCATGCGCCTA 347 consensus_12599#2 AAGACCTGTTTGGAAATTACAATGTCC-----CGGAGAAAGATA---GGCGTTGTGTTTG 245 **** * ** *** * ** ** * **** * ** ** ** * * consensus_12599#0 CTTATTTGAC-ATAGATGAGTCCATA-ACGCTGCATGACTTGTCCATGAACTGCA-CAAG 411 consensus_12599#1 CTTATTTGAC-ATAGATGAGTCCATA-ACGCTGCATGACTTGTCCATGAACTTTTTCATG 405 consensus_12599#2 CTATCCTATCCGTAGACTTTCCTGTAGACACTCTTAAAGTCATCCAAGCCTGTTGCCTTT 305 ** * * **** * ** ** ** * * **** * * consensus_12599#0 GAATGTA--CGATATAGTAACTACACCATAAAAATCATGTCTGTTCTAAACAAACTAGGC 469 consensus_12599#1 GAATGTAGTTCCCGTCCAAATGGCTCCAGGAACTTCATCTCTATATCAAGGGGCCAAACC 465 consensus_12599#2 TTTCACTTTCAACATTAGTGCTGCTGGGTAACATGCACTTTGCTTCCAATGACCTGTATA 365 * * * ** * * ** consensus_12599#0 GTGATAAGTTATCATTCTAATGGAGCAGTAGAAGGTAATTATAAACTAATGCCAATGTAG 529 consensus_12599#1 TTGA--GGCCAGAGCGC--AGGGGCCTGTGCCCGGGCACGATGCACTCCGGCCCG-GCCG 520 consensus_12599#2 TTGT--GACCAGAGGGNCCACCCATGTATGCCCTGGGATTCCNACATTTCAATNGCA-GG 422 ** * * * * * * * consensus_12599#0 TCCTAAACAGATCTTAGGAGACAANACCATATTTTAC---ATTTGCATTTCGACTAGCAG 586 consensus_12599#1 CCTCCACCATAGCCTCCATGGCCAACCCCTCCCCTATCGGATCCGGATGCTTCATGACGG 580 consensus_12599#2 TTGAGGCAATAGACCCAATA---------------------------------------- 442 * * consensus_12599#0 ATAGTTGACAAAAATGTATGTATCTGCTCTTGCATAATGGTCA--GGGAACACCATTAGT 644 consensus_12599#1 CGAG--GGCGTAGGCGGAATAATCGTCCTGCGCGACGCGGAGGACGGGGGCGTGGTGGAT 638 consensus_12599#2 ------------------------------------------------------------ consensus_12599#0 TTGTTGAATGACACNAACCCTCTTGAGAAAGAAGAAAAAGAAAGGACATTTTTGGGGTTT 704 consensus_12599#1 GCGCGGGACGGGGCGGATCC---------------------------------------- 658 consensus_12599#2 ------------------------------------------------------------ consensus_12599#0 TAACCGGACCTCAAACGGAGGAAGGTTTTTGCTTTATTGGGCTTGCTCT 753 consensus_12599#1 ------------------------------------------------- consensus_12599#2 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||