These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 923 fasta sequence [ATAAAGCAGTC-CATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA-TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT-GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG-CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC--CAGCCTG-C-TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC-TGGTCTTGGT-CGTCGCCACCA-CCAGCCGGGAGATG-CCGCCGCGGCAGAACGGGCAGGTCGGCA-GCGGCTGCTGG--CACGGCGTCGCCGCCGCCGCGCTGGGCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCCGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAACTGCCAACGGCGACGCGCTCCTGGGGAGCAGCAGGACATGAACCGGAGAGAGAGTGGGGGAGTGGGTGTGGGTGTGTGTTGTGTCCAGCGAGCCACAG] [+] EMBL CB637612 [ATAAAGCAGTC CATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTTATATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATTTTTTTTA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGG ] [+] EMBL CB647801 [ AAAGCAGTCACATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC TGGTCTTGGT CGTCGCCACCA CCAGCCGGGAGATG CCGCCGCGGCAGAACGGGCAGGTCGGCA GCGGCTGCTGG CACGGCGTCGCCGCCGCCGCGCTGGGCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTG ] [-] EMBL BI808624 [ tttttttttTGCTGGGGGCTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC CAGCCTGTC TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTCGTGGTCTGGGTCCGTCGCCACCACCCAGCCGGGAGATGCCCGCCG GGCAGACCGGGCAGGTCGGCACGCGGCTGCTGGGCCACGGCGTCG CG CGCCGCGCTGG ] [-] EMBL BQ906742 [ tttttttttTACCAAGCATGCAAGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAACTAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCGCCCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCG CTGC ] [-] EMBL BM422032 [ tttttttTGC AGGACTG TTATTTGGATTTACACAGCGTAATACAGCATGGGTCAAATCTACACAGATGGAATAGCTCATTTTCTTGAGGAAAAAATAATAGTAA TAATCTACAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCT GCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCGGNTGAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TG CCG CTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC TGGTCTTGGT CGTCGCCA CA CCAGCCGGGAGATG CCGCCGCGGCAGAACGGGCAGGTCGGCA GCGGCTGCTGG CACGGCGTCGCCGCCGCCG ] [-] EMBL BM419196 [ TTTTTGAGGAAAAAATAATAGTAA TAATCTNCAAAAAATAGTAGCTCATTTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCGTGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGGGTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGATGCTGCTGGTGCTGCCGCCGTCG CCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCCTGTGCAGC CCCACGCGTCCGCCCA CGCGTCCGCCCACGCGTCcgcggacgc ] [-] EMBL AU222871 [ GAGACCTCCTGTGCAGCGGCGACGC CAGCCTG C TGCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGCTC TGGTCTTGGT CGTCGCCACCA CCAGCCGGGAGATG CCGCCGCGGCAGAACGGGCAGGTCGGCA GCGGCTGCTGG CACGGCGTCGCCGCCGCCGCGCTGGGCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCCGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAACTGCCAACGGCGACGCGCTCCTGGGGAGCAGCAGGACATGAACCGGAGAGAGAGTGGGGGAGTGGGTGTGGGTGTGTGTTGTGTCCAGCGAGCCACAG] consensusID : consensus_12610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 844 fasta sequence [TTTTTTTTTTTTTTTTGATTTGGGT-TCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATG-CAAGGACTGCTTATTTGG-ATTTACACAGCGTAATACAGCATGGCT-CAAATCTACACAGATGG-AATAGCTCATTTTCTTGAGGAAAAA-ATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGCCGATC-GGTTGAAGAAGACTAC-G-ACGACGACGACAATGGCTTGTACCAGGATG-ATCGT-GTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT-GTCGGTTC-GCCGTCT-GCCCATCTTCCCGATCGACGACGCAATGCTG-CCCATGATGCTGCT-GGT-GC-TGCC-GCCGT-CGCCGCTGGGGTGGTTCACCGCCCGGCGAGACATCCCTTGTGCAAGTGGATGAACAGCCAAGCGTGATTGGCCCAGCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGTCCGCCGACGACGGGTTCAGCAGCGCGGCGCACGCGACGTGCCCTCGCTTCATCGCCACCTCGTACGGAATCCTCCCGACGGAGTCTCGCTGGAGGCGGTCGGCGCGCTGGGTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCAGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAANCCAAC] [-] EMBL AU070662 [TTTTTTTTTTTTTTTTGTTTTGGGT TCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATG CAAGGACTGCTTATTTGG ATTTACACAGCGTAATACAGCATGGCT CAAATCTACACAGATGG AATAGCTCATTTTCTTGAGGAAAAA ATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGCCGATC GGTTGAAGAAGACTAC G ACGACGACGACAATGGCTTGTACCAGGATG ATCGT GTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT GTCGGTTC GCCGTCT GCCCATCTTCCCGATCGACGACGCAATGCTG CCCATGATGCTGCT GGT GC TGCC GCNGT CGCCGCTGGGGTGGTTCACCGCCCGGCGAGA ] [-] EMBL BM420370 [ TTTTTTTTTTGATGGGGGTGGCTGATTATCATATCGGTCCAAATCTCTGAA CTGG ATTTACAAATTTTCAAGAACTCCACTGGAAGTGNTGGGGG TA CAAG ATG AAGGACTGGTTATTTGG ATTTACACAGGGTAATACAGCATGG T CAAATCTACACAGATGG AATAGGTCATTTTCTTGAGGAAAAA ATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGGCGATCTGGTTGAAGAAGACTACTG ACGA GACGACAATGGCTTGTACCAGGATG ATCGT GTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT GTCGGTTCAGCCGTCT G CCATCTTCCCGATCGACGACGCAATGCTG CCATGATGCTG T GGT GC TG C G CGT CGCCGCTGGGGTGGTTCAACGCCGGGAGAACCATCCCTTGTGCAAGTGGATGAACAGCCAAGCGTGATTGGCCCAG ] [-] EMBL BQ907837 [ TTTTTTTTTTG TTGGGT TCTCATTATCATATCGGTCCAAATCTCTGAACCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCCAAGGACTGCTTATTTGGCATTTACACAGCGTAATACAGCATGGCTCCAAATCTACACAGATGGCAATAGCTCATTTTCTTGAGGAAAAACATAATAGTAATAATCTACAAAAAATAGTAGCTCATTTGCCGATC GGTTGAAGAAGACTAC GCACGACGACGACAATGGCTTGTACCAGGATG ATCGTAGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCTAGTCGGTTC GCCGTCTAGGCCATCTTCCCGATCGACGACGCAATGCTG CCCATGATGCTGCTAGGTAGCTTGCCAGCCGTACGCCG ] [-] EMBL AU162563 [ AGAAGACTAC G ACGACGACGACAATGGCTTGTACCAGGATGAATCGT GTCCACTCTGACTCGATCCGATGANTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTCGCTGCT GTCGGTTC GCCGTCT GCCCATCTTCCCGATCGACGACGCAATGCTGCCCCATGATGCTGCT GGT GC TGCC GCCGT CGCCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCC TGTGC AGCGG CG AC GCC AGCCTGCT GCCCGCCTCCTCGTCGTCCTCCTCGTCGTCGCCGCCTGTCCGCCGACGACGGGTTCAGCAGCGCGGCGCACGCGACGTGCCCTCGCTTCATCGCCACCTCGTACGGAATCCTCCCGACGGAGTCTCGCTGGAGGCGGTCGGCGCGCTGGGTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCCGCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCAGGCCGCCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATGGCAANCCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12610#0 ATAAAGCAGTCCATGGATTTGTTTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAA 60 consensus_12610#1 ----TTTTTTTTTTTTTTTTGATTTGGGTTCTCATTATCATATCGGTCCAAATCTCTGAA 56 * * **** ************************************** consensus_12610#0 CCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCA 120 consensus_12610#1 CCTGGCATTTACAAATTTTCAAGAACTCCACTGGAAGTGCTGGGGGCTACCAAGCATGCA 116 ************************************************************ consensus_12610#0 AGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGG 180 consensus_12610#1 AGGACTGCTTATTTGGATTTACACAGCGTAATACAGCATGGCTCAAATCTACACAGATGG 176 ************************************************************ consensus_12610#0 AATAGCTCATTTTCTTGAGGAAAAAATAATAGTAATAATCTACAAAAAATAGTAGCTCAT 240 consensus_12610#1 AATAGCTCATTTTCTTGAGGAAAAAATAATAGTAATAATCTACAAAAAATAGTAGCTCAT 236 ************************************************************ consensus_12610#0 TTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCG 300 consensus_12610#1 TTGCCGATCGGTTGAAGAAGACTACGACGACGACGACAATGGCTTGTACCAGGATGATCG 296 ************************************************************ consensus_12610#0 TGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTC 360 consensus_12610#1 TGTCCACTCTGACTCGATCCGATGAGTTGCGTGCTAGGGCTTGTCGACGTCGACGTGTTC 356 ************************************************************ consensus_12610#0 GCTGCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGAT 420 consensus_12610#1 GCTGCTGTCGGTTCGCCGTCTGCCCATCTTCCCGATCGACGACGCAATGCTGCCCATGAT 416 ************************************************************ consensus_12610#0 GCTGCTGGTGCTGCCGCCGTCGCCGCTGGGGTGGTTCACCGCCCGGCGAGACCTCC--TG 478 consensus_12610#1 GCTGCTGGTGCTGCCGCCGTCGCCGCTGGGGTGGTTCACCGCCCGGCGAGACATCCCTTG 476 **************************************************** *** ** consensus_12610#0 TGCAGCGGCGACGCCAGCC-----TGCT--GCCCGCCTCCTCGTCGTCCTCCTCGTCGTC 531 consensus_12610#1 TGCAAGTGGATGAACAGCCAAGCGTGATTGGCCCAGCTCCTCGTCGTCCTCCTCGTCGTC 536 **** * ***** ** * **** ************************ consensus_12610#0 GCCGCCTGCTC--TGGTCTTGGTCGTCGCCAC-CACCAGCCGGGAGATGCCGCCGCGGCA 588 consensus_12610#1 GCCGCCTGTCCGCCGACGACGGGTTCAGCAGCGCGGCGCACGCGACGTGCCCTCGCTTCA 596 ******** * * ** ** * * * ** ** **** *** ** consensus_12610#0 GAACGGGCAGGTCGGCAGCGGCTGCTGGCACGGCGTCGCCG-------CCGCCGCGCTGG 641 consensus_12610#1 TCGCCACCTCGTACGGAATC-CTCCCGACGGAGTCTCGCTGGAGGCGGTCGGCGCGCTGG 655 * * ** * * ** * * * * **** * ** ******** consensus_12610#0 GCTTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCC 701 consensus_12610#1 G-TTCGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCACACTCCC 714 * ********************************************************** consensus_12610#0 GCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCCGGCCG 761 consensus_12610#1 GCACCTCGATCGTGCACGCCTGCTCGAAGCAGATGCTGCACACCTCGCCGCCGCAGGCCG 774 ****************************************************** ***** consensus_12610#0 CCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATG 821 consensus_12610#1 CCGCCGCCTCCTCAGAGATGGCGGCGTCGTGCGCGCCGTCGTCTGAACGCGACGGCGATG 834 ************************************************************ consensus_12610#0 GCAACTGCCAACGGCGACGCGCTCCTGGGGAGCAGCAGGACATGAACCGGAGAGAGAGTG 881 consensus_12610#1 GCAAN--CCAAC------------------------------------------------ 844 **** ***** consensus_12610#0 GGGGAGTGGGTGTGGGTGTGTGTTGTGTCCAGCGAGCCACAG 923 consensus_12610#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||