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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 850 fasta sequence
[CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC-TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC-TTTGGTTGTCTAGATGTAAG-CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAT----AAAAAAAAAAAAAAAA]
[+] EMBL AK071587 [CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCTCAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAG CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACT ]
[+] EMBL CA764445 [ GATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGACGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCAGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTTGGTTGGCTAGATGTAAG CCGCCCTGGAATTTTCTATTTNT TCATAGAAAGGCATCTCTTAAACTGNGCCTGATCTGATCGTCAAGNTAGNGCAACTTTTAATTGACGGAATTACGTCTGGAACATGNAGNTNTGC ACTAANACTGCAGAAGG AATTGCAGAACTGgcat ]
[+] EMBL CF295305 [ CACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACA ]
[+] EMBL AU172963 [ ACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCA ]
[+] EMBL CF302081 [ CAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGC ]
[+] EMBL CF305253 [ AGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACTAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTGCCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCTTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAA ]
[+] EMBL OSSRP14 [ AAAACACCAGAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAGCCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAA AAAAAAAAAA ]
[+] EMBL OSS1544A [ GAAGGGGAAAACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCGTTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAG ACGGAGAAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTTGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGT ]
[-] EMBL CA763198 [ AAGGGATCTGTCTGGGTCACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGAGAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACCGCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCCCATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGCCAAGAAGAAGGCTGCAGAGGTTGAGAAGATACCAGAGAAGGCCCCGAAGAAGCAGAAGAAAGCCCCGTCTTCAAAGAAATTTGCAGGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCC TTTTTTGGCCACAGGCCTGAGTAAGATGGGTGTAGTCAAGACATTATCCTCCCTTTTACTCTTATTCATGTTTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAA CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTCTTAAACTGTGCCTGATCTGATTGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTTTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTATCTGGAAAAAAAAAAAAAAAA]
[+] EMBL AU033038 [ gntgGGGTGTAGTCAAGNCATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTNCCGTCGNCATTAGCAATTTTTGAAGCAGC TTTGGTTGTCTAGATGTAAG CCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGNATCTCTTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTCTGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTAA AAAAAAAAAA ]
consensusID : consensus_12620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence
[TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGNGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNNTTNA]
[+] EMBL AU058358 [TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGNGTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGATGAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCTTTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNNTTNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_12620#0 CGATCCAAACACCAGCGGCGAAGGCGACGAAGACGAGGGCAAAAACACCAGAAGGGGAAA 60
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 ACTTTTGCTCTCCCGGCGATCTCGAGATCTCTCAAGATGGTGGTGCTGCAACCAGATCCG 120
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 TTTCTGAGCGAGTTGACGAGCATGTACGAGCGGAGCACGGAGAAGGGATCTGTCTGGGTC 180
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 ACCATGAAGCGATCATCGATGAAGTGCCAGGCAAGGTTGAAGAAGATGGCGGCGAAGGGA 240
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 GAGGCAGTGGAGTACCGGTGCCTCGTCCGTGCCACCGATGGCAAGAAGAACATCTGCACC 300
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 GCGCTCTCTGCAAAGGAGTACCTGAAGTTCCAAGCTTCATATGCCACAGTTCTTAAAGCC 360
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 CATATGCACGCTTTGAAGAAGAGGGAGAGGAAAGACAAGAAGAAGGCTGCAGAGGTTGAG 420
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 AAGATACCAGAGAAGGCACCGAAGAAGCAGAAGAAAGCACCGTCTTCAAAGAAATCTGCA 480
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 GGGTCCAAGTCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGA 540
consensus_12620#1 ---------TCGTAAGTTACTGAAAGAATTTGCTAAGCCCTTTTTTGGCCACAGGCCTGN 51
**************************************************
consensus_12620#0 GTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGAT 600
consensus_12620#1 GTAAGATGGGTGTAGTCAAGACATTATCCTCCATTTTACTCTTATTCATGTCTGCGAGAT 111
************************************************************
consensus_12620#0 GAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCT 660
consensus_12620#1 GAAGCATGTGAATACCTTTATAGAGCTGTGCCGTCGACATTAGCAATTTTTGAAGCAGCT 171
************************************************************
consensus_12620#0 TTGGTTGTCTAGATGTAAGCCGCCCTGGAATTTTCTATTTCTATCATAGAAAGGCATCTC 720
consensus_12620#1 TTGGTTGTCTAGATGTAAGCCGCCNTGGAATTTTCTATTTCTNTNATAGANAGGNNTNNN 231
************************ ***************** * ***** *** *
consensus_12620#0 TTAAACTGTGCCTGATCTGATCGTCAAGTTAGTGCAACTTTCAATTGACAGAATTACGTC 780
consensus_12620#1 TTNA-------------------------------------------------------- 235
** *
consensus_12620#0 TGGAACATGAAGTTATGCAACTAAGACTGCAGAAGGAAATTGCAGAACTGTTATAAAAAA 840
consensus_12620#1 ------------------------------------------------------------
consensus_12620#0 AAAAAAAAAA 850
consensus_12620#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||