These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1966 fasta sequence [GGTTCTGAAGCACTTAAGTGGGCTATGGAGTGCACATCTCGTCACTTGGCATGTCGGTCACACCAGATATATCGTGCTTTACGCCCCAGTGTTAAAAGCGATAGCTGTGTATTGCTTATGAGGTGCATCCACAGATGCTTGGGTAACCCTGTTCCAGCTGTTCTGGGTTTTGCAATGGAGATATTGTTGACTCTTCAAGTCATGGTTGAGAACATGGAACCTGAGAAGGTGATACTTTACCCACAGCTCTTCTGGGGCTGTGTTGCACTGATGCATACCGATTATGTGCACATATATTGCCAGGTGCTTGAATTGTTCTGTAGGGTAATCGATCGCTTGACGTTCCGTGATCGGACAACTGAAAATGTGTTACTGTCCAGCATGCCACGTGATGAGTTTGACATCAATGGGTATACAAGCGACCTCCACAGGCTGGAATCGAGAACCACGTCAGAGAGATTGCTATCCGTGACAGAGACTGGGAAAGTTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCTATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAGAATCAGAAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTAGATGATTTAGCGGAAGTCTTCAGAGCATACTCCTTTGGAGAAATCATCTCCCTAGAAGATCTTTTTGCACGCGCTTCGCCGCCAATATGTTCCGAGTGGTTCCCTAAGCACTCATCTCTGGCATTTGGGCACCTGCTTAGGCTCCTTGAGAGAGGTCCTCTGGATTATCAGAGAGTGGTGCTTCTGATGCTTAAATCACTGTTGCAGCAAAGCCCAGTGGATCCATCTCAGATACCTCAAGTGTACAATGTTGTGTCACAGCTCGTGGAGAGCGCACTATGTGCAGAGGCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGATGGGGGAGAAGGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCAAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCGGTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCT--CAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTTCTTGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTGATTCATTATTATTGTTACCTGTTGTGTTCATTTATGCACGGAGACGATGTAATCTGTTTGATGTCGCTACCGTAGAGTCGAAACATCTCTCGAACAATCTAATTCACCATTCATCGTGAGAAGCTGTTATT] [+] EMBL CB676029 [GGTTCTGAAGCACTTAAGTGGGCTATGGAGTGCACATCTCGTCACTTGGCATGTCGGTCACACCAGATATATCGTGCTTTACGCCCCAGTGTTAAAAGCGATAGCTGTGTATTGCTTATGAGGTGCATCCACAGATGCTTGGGTAACCCTGTTCCAGCTGTTCTGGGTTTTGCAATGGAGATATTGTTGACTCTTCAAGTCATGGTTGAGAACATGGAACCTGAGAAGGTGATACTTTACCCACAGCTCTTCTGGGGCTGTGTTGCACTGATGCATACCGATTATGTGCACATATATTGCCAGGTGCTTGAATTGTTCTGTAGGGTAATCGATCGCTTGACGTTCCGTGATCGGACAACTGAAAATGTGTTACTGTCCAGCATGCCACGTGATGAGTTTGACATCAATGGGTATACAAGCGACCTCCACAGGCTGGAATCGAGAACCACGTCAGAGAGATTGCTATCCGTGACAGAGACTGGGAAAGTTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCTATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAGAATCAGAAAGCTTACT ] [+] EMBL AK060482 [ GCTTGAATTGTTCTGTAGGGTAATCGATCGCTTGACGTTCCGTGATCGGACAACTGAAAATGTGTTACTGTCCAGCATGCCACGTGATGAGTTTGACATCAATGGGTATACAAGCGACCTCCACAGGCTGGAATCGAGAACCACGTCAGAGAGATTGCTATCCGTGACAGAGACTGGGAAAGTTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCTATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAGAATCAGAAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTAGATGATTTAGCGGAAGTCTTCAGAGCATACTCCTTTGGAGAAATCATCTCCCTAGAAGATCTTTTTGCACGCGCTTCGCCGCCAATATGTTCCGAGTGGTTCCCTAAGCACTCATCTCTGGCATTTGGGCACCTGCTTAGGCTCCTTGAGAGAGGTCCTCTGGATTATCAGAGAGTGGTGCTTCTGATGCTTAAATCACTGTTGCAGCAAAGCCCAGTGGATCCATCTCAGATACCTCAAGTGTACAATGTTGTGTCACAGCTCGTGGAGAGCGCACTATGTGCAGAGGCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGATGGGGGAGAAGGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCAAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCGGTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCTCACAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTC TTTTTTTCTTGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTGATTCATTATTATTGTTACCTGTTGTGTTCATTTATGCACGGAGACGATGTAATCTGTTTGATGTCGCTACCGTAGAGTCGAAACATCTCTCGAACAATCTAATTCACC ] [-] EMBL CB633752 [ GCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGATGGGGGAGAAGGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCAAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCGGTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCT CAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTTCTTGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAGAGGACTCCAGTGTAGTGTTT ] [-] EMBL CB676030 [ TCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGATGGGGGAGAAGGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCAAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCGGTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCTCACAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTC TTTTTTTCTTGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGGGGGATTCATTATTATTGTTACC ] [-] EMBL CB628403 [ GGCGAGAATGGTCACGGGATGGGGGAGAAGGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCAAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCGGTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCACCCT CAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTTGTGGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTGATTCGTTATTATTGTTCCCTGTTGTGTT ] [+] EMBL CA767400 [ TGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGACGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCT CAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTTCTTGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTGATTCATTATTATTGTTACCTGTTGTGTTCATT ] [+] EMBL CA766871 [ CCAGTGTAGTGTTTGATTCATTATTATTGTTACCTGTTGTGTTCATTTATGCACGGAGACGATGTAATCTGTTTGATGTCGCTACCGTAGAGTCGAAACATCTCTCGAACAATCTAATTCACCATTCATCGTGAGAAGCTGTTATT] consensusID : consensus_12624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1485 fasta sequence [GTATCTTTGAGACCTCCACAGGCTGGAATCGAG-AACCACGTCAGAGAGATTGCTATCCGTGACAGAGACTGGGAAAGCTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCTATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAAAATCAGAAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTAGATGATTTAGCGGAAGTCTTCAGAGCATACTCCTTTGGAGAAATCATCTCCCTAGAAGATCTTTTTGCACGCGCTTCGCCGCCAATATGTTCCGAGTGGTTCCCTAAGCACTCATCTCTGGCATTTGGGCACCTGCTTAGGCTCCTTGAGAGAGGTCCTCTGGATTATCAGAGAGTGGTGCTTCTGATGCTTAAATCACTGTTGCAGCAAACCCCAGTGGATCCATCTCAGATACCTCAAGTGTACAATGTTGTGTCACAGCTCGTGGAGAGCGCACTATGTGCAGAGGCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGAT-GGGGGAGAAGGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCGAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCGGTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCTCAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTGGTTGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTAAATGATTATTATTGTTACCTGTTGTGTTCAAAAAAAACTTAAAGGAAAAAAAACTCGAGG] [+] EMBL CB633751 [GTATCTTTGAGACCTCCACAGGCTGGAATCGAG AACCACGTCAGAGAGATTGCTATCCGTGACAGAGACTGGGAAAGCTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCTATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAAAATCAGAAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTAGATGATTTAGCGGAAGTCTTCAGAGCATACTCCTTTGGAGAAATCATCTCCCTAGAAGATCTTTTTGCACGCGCTTCGCCGCCAATATGTTCCGAGTGGTTCCCTAAGCACTCATCTCTGGCATTTGGGCACCTGCTTAGGCTCCTTGAGAGAGGTCCTCTGGATTATCAGAGAGTGGTGCTTCTGATGCTTAAATCACTGTTGCAGCAAACCCCAGTGGATCCATCTCAGATACCTCAAGTGTACAATGTTGTGTCACAGCTCGTGGAGAGCGCACTATGTGCAGAGGCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGATGGGGGGAGAAGGTTCACCAAAGCATGCTTCTTCC ] [+] EMBL CB633802 [ CTGGAGTCGAGCAACCACCTCGGAGACATGGGTGGCGGGGACGAAGACTGGGAAAGTTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTACTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTACGATTACCATCCCATCATGTGATTCTATATTTGGGAGTCCTGATACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCATCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAAAATCAGAAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTAGATGATTTAACGGAAGTCTTCAGAGCATACTCCTTTGGAGAAATCATCTCCCTAGAAGATCTTTTTGCACGCGCTTCGCCGCCAATATGTTCCGAGTGGTTCCCTAAGCACTCATCTCTGGCATTTGGGCACCTGCTTAGGCTCCTTGAGAGAGGTCCTCTGGATTATCAGAGAGTGGTGCTTCTGATGCTTAAATCACTGTTGCAGCAAACCCCAGTGGATCCATCTCACATACCTCAAGTGTACAATGTTGTGTCACAGCTCGTGGAGAGCGCACTATGTGCACAGGCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGAT GGGGGAGAAAGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCGAGGCTAGGAGTGGACCTCTTCAATATGC ] [-] EMBL CB635121 [ CATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAGGTGATGATATTGGATTTGGCGAGAATGGTCACGGGAT GGGGGAGAAGGTTCACCAAAGCATGCTTCTTCCTCAATCATCATTCAAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCGGTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGGCCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACATGCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGTAGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATGAATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGTTGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAATTTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCTCAGAGGTCGCAGGTTTGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGCATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTGGTTGGCTAGTGTGTATATTGGAATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTAAATGATTATTATTGTTACCTGTTGTGTTCAAAAAAAACTTAAAGGAAAAAAAACTCGAGG] consensusID : consensus_12624#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [TGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCTATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAGGATCAGNAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTAGATGATTTAGCGGAAGTCTTCAGAGCATAACTCCTTTGGAGAAAATCATCTCCCCTAGAAAGATCTTTTGCACGGNGCTTCGCCGCCAATATTGTTCCGNAGTNGTTCCCAAANGACTTCAACCTCTTGGAATTTTNGGGACCTTCTTTAGGNCTCCCTTGAGANAAGGCCNCTTGGTTTATNANAANGTNGGGGTTCNAANTNNTTAAACACTTTTAAGNAACCCCATNGGNNCCACTN] [+] EMBL D42960 [TGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGTGTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCTATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTTGGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAGGATCAGNAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTAGATGATTTAGCGGAAGTCTTCAGAGCATAACTCCTTTGGAGAAAATCATCTCCCCTAGAAAGATCTTTTGCACGGNGCTTCGCCGCCAATATTGTTCCGNAGTNGTTCCCAAANGACTTCAACCTCTTGGAATTTTNGGGACCTTCTTTAGGNCTCCCTTGAGANAAGGCCNCTTGGTTTATNANAANGTNGGGGTTCNAANTNNTTAAACACTTTTAAGNAACCCCATNGGNNCCACTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12624#0 GGTTCTGAAGCACTTAAGTGGGCTATGGAGTGCACATCTCGTCACTTGGCATGTCGGTCA 60 consensus_12624#1 ------------------------------------------------------------ consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 CACCAGATATATCGTGCTTTACGCCCCAGTGTTAAAAGCGATAGCTGTGTATTGCTTATG 120 consensus_12624#1 ------------------------------------------------------------ consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 AGGTGCATCCACAGATGCTTGGGTAACCCTGTTCCAGCTGTTCTGGGTTTTGCAATGGAG 180 consensus_12624#1 ------------------------------------------------------------ consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 ATATTGTTGACTCTTCAAGTCATGGTTGAGAACATGGAACCTGAGAAGGTGATACTTTAC 240 consensus_12624#1 ------------------------------------------------------------ consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 CCACAGCTCTTCTGGGGCTGTGTTGCACTGATGCATACCGATTATGTGCACATATATTGC 300 consensus_12624#1 ------------------------------------------------------------ consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 CAGGTGCTTGAATTGTTCTGTAGGGTAATCGATCGCTTGACGTTCCGTGATCGGACAACT 360 consensus_12624#1 ------------------------------------------------------------ consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 GAAAATGTGTTACTGTCCAGCATGCCACGTGATGAGTTTGACATCAATGGGTATACAAGC 420 consensus_12624#1 --------------------------------------------------GTATCTTTGA 10 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 GACCTCCACAGGCTGGAATCGAGAACCACGTCAGAGAGATTGCTATCCGTGACAGAGACT 480 consensus_12624#1 GACCTCCACAGGCTGGAATCGAGAACCACGTCAGAGAGATTGCTATCCGTGACAGAGACT 70 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 GGGAAAGTTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGT 540 consensus_12624#1 GGGAAAGCTCCTGATTTCGAAGGGGTGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGT 130 consensus_12624#2 -------------------------TGCAGCCATTGGTGCTGAAAGGGCTTATGTCTAGT 35 *********************************** consensus_12624#0 GTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCT 600 consensus_12624#1 GTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCT 190 consensus_12624#2 GTTAGCCATGGATCTGCAATTGAGGTGTTATCTAGGATTACCATCCCAACATGTGATTCT 95 ************************************************************ consensus_12624#0 ATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTT 660 consensus_12624#1 ATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTT 250 consensus_12624#2 ATATTTGGGAGTCCTGAGACAAGGCTGTTGATGCACATCACAGGTCTTCTTCCATGGCTT 155 ************************************************************ consensus_12624#0 GGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAG 720 consensus_12624#1 GGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAA 310 consensus_12624#2 GGGTTGCAGCTCACCAAAGATGCATCTTCCCTCGGGTCATCTTCACCTATACAAGAGCAG 215 *********************************************************** consensus_12624#0 AATCAGAAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTA 780 consensus_12624#1 AATCAGAAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTA 370 consensus_12624#2 GATCAGNAAGCTTACTATGTGGCATCCAACATTTCGGTGTGGTGCCGTGTCAAATCTTTA 275 ***** ***************************************************** consensus_12624#0 GATGATTTAGCGGAAGTCTTCAGAGCATA-CTCCTTTGGAGAAA-TCATCTCCC-TAGAA 837 consensus_12624#1 GATGATTTAGCGGAAGTCTTCAGAGCATA-CTCCTTTGGAGAAA-TCATCTCCC-TAGAA 427 consensus_12624#2 GATGATTTAGCGGAAGTCTTCAGAGCATAACTCCTTTGGAGAAAATCATCTCCCCTAGAA 335 ***************************** ************** ********* ***** consensus_12624#0 GATCTTTTTGCACG-CGCTTCGCCGCCAATAT-GTTCCGA-GTGGTTCCCTAAGCACTC- 893 consensus_12624#1 GATCTTTTTGCACG-CGCTTCGCCGCCAATAT-GTTCCGA-GTGGTTCCCTAAGCACTC- 483 consensus_12624#2 AGATCTTTTGCACGGNGCTTCGCCGCCAATATTGTTCCGNAGTNGTTCCCAAANGACTTC 395 ********* **************** ****** ** ****** ** *** consensus_12624#0 -ATCTCTGGCA--TTTGGGCACCTGCTT-AGGCT--CCTTGAGAGAGGTCCTCT-GGATT 946 consensus_12624#1 -ATCTCTGGCA--TTTGGGCACCTGCTT-AGGCT--CCTTGAGAGAGGTCCTCT-GGATT 536 consensus_12624#2 AACCTCTTGGAATTTTNGGGACCTTCTTTAGGNCTCCCTTGAGANAAGGCCNCTTGGTTT 455 * **** * * *** ** **** *** *** ******** * * ** ** ** ** consensus_12624#0 ATCAGAGAGTGGTGCTTCTGATGCTTAAATCACTGTTGCAGCAAAGCCCAGTGGATCCAT 1006 consensus_12624#1 ATCAGAGAGTGGTGCTTCTGATGCTTAAATCACTGTTGCAGCAAACCCCAGTGGATCCAT 596 consensus_12624#2 ATNANAANGTNGGGGTTCNAANTNNTTAAACACTTTT--AAGNAACCCCATNGGNNCCAC 513 ** * * ** * * *** * * ** **** ** * ** **** ** *** consensus_12624#0 CTCAGATACCTCAAGTGTACAATGTTGTGTCACAGCTCGTGGAGAGCGCACTATGTGCAG 1066 consensus_12624#1 CTCAGATACCTCAAGTGTACAATGTTGTGTCACAGCTCGTGGAGAGCGCACTATGTGCAG 656 consensus_12624#2 TN---------------------------------------------------------- 515 consensus_12624#0 AGGCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAG 1126 consensus_12624#1 AGGCATTGAATGTGTTGGAGGCGCTCCTACGGAGCTGCAGCGGTGTAACTGGTGGTCAAG 716 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 GTGATGATATTGGATTTGGCGAGAATGGTCACGGGATGGGGGAGAAGGTTCACCAAAGCA 1186 consensus_12624#1 GTGATGATATTGGATTTGGCGAGAATGGTCACGGGATGGGGGAGAAGGTTCACCAAAGCA 776 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 TGCTTCTTCCTCAATCATCATTCAAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCG 1246 consensus_12624#1 TGCTTCTTCCTCAATCATCATTCGAGGCTAGGAGTGGACCTCTTCAATATGCTGCTGCCG 836 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 GTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGG 1306 consensus_12624#1 GTTCAGGGTTTGGGACTCTAATGGGGCAAGGCGGTGGCAGCGCTGCAGATACTGGAGTGG 896 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 CCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACAT 1366 consensus_12624#1 CCACCCGAGATGTGGCGCTGCAGAATACCCGGTTGCTGCTTGGGCGTGTCCTTGATACAT 956 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 GCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGT 1426 consensus_12624#1 GCGCTCTTGGGCGTAAGAGGGATCATAAGCGCCTTGTGCCGTTTGTGGCGAACATCGGGT 1016 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 AGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATG 1486 consensus_12624#1 AGAAAATGCAGTTGAGTGACCTATGTAAAATGTTTGGTGGCTATATGTGCTAACTGAATG 1076 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 AATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGT 1546 consensus_12624#1 AATGAATGCAGCCAATTTTGTACAGCTAGGAGCGTGATCCAGAAATCGCTGTGCACAGGT 1136 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 TGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAAT 1606 consensus_12624#1 TGACAAGATAGAAGAAGCAGCACTTCCCGCCACCGAAAGACTACCCTAACCAAACTCAAT 1196 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 TTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCTCAGAGGTCGCAGGTT 1666 consensus_12624#1 TTTGACTGTTGTAATATCGGAATGTGTTTATTTATCCTGCAACCTCAGAGGTCGCAGGTT 1256 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 TGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGC 1726 consensus_12624#1 TGAAGTATGGTTGTAGCTGTAGACTGCAATTCATTGGATGCACATACACATACATACAGC 1316 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 ATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTTCTTGGCTAGTGTGTATATTGG 1786 consensus_12624#1 ATGAGCGAGTGGCACAAGCTCTTTTCTTTTCTTTTTTTGGTTGGCTAGTGTGTATATTGG 1376 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 AATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTGATTCATTATTA 1846 consensus_12624#1 AATTGCTTGGTGACATCCCGAAGGGGAAGGGACTCCAGTGTAGTGTTTAAATGATTATTA 1436 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 TTGTTACCTGTTGTGTTCATTTATGCACGGAGACGATGTAATCTGTTTGATGTCGCTACC 1906 consensus_12624#1 TTGTTACCTGTTGTGTTCAAAAAAA-ACTTAAAGGAAAAAAA--ACTCGAGG-------- 1485 consensus_12624#2 ------------------------------------------------------------ consensus_12624#0 GTAGAGTCGAAACATCTCTCGAACAATCTAATTCACCATTCATCGTGAGAAGCTGTTATT 1966 consensus_12624#1 ------------------------------------------------------------ consensus_12624#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||