These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 3075 fasta sequence [CTAGCAGAGCACTCGCGGAGGCGAGGAGAGAGAGAGAGAGAGAGAGAGGTTGGAAGAGGAGGGGAGAGTCCACGTGAGTGAGAGGAGGAGGAGGAGGAGGAGATCCCTCTCCCGCGCGCATCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAG-CAGAGAATGTTGGAATATCTCTT-CAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGTTGTGGAGCATGTGCAAGAGAAGGAGCCTACCCCTGAACCCAACACAGCCAACCATCAGTCCCCTGCGAAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCAACTACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCACAATTTAGCTTGCAGAGCGACTCTTAATCCAGAA-GATAAATTTTGCAGACGCTGTTCATGCTGTATTTGTTTCAAGTACGATGACAATAAGGATCCTAGCCTCTGGTTATTCTGTAGTTCAGATCAACCCTTGCAGAAAGATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATCATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAACAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGGTTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAGTACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGTCCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCTGAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCTCCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAAGCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCCAAAATGAAGACAAGCTGTCAGAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCT-GGGCTAGACCAAAACAAT-GGGAGCCCAAAGGCAAACAGTGGT-GGTCAGTCTGATCCTTCTTCAGAAGGTGTGGACTCAAATAATAACACTGCGGTGTATGCTGATCTCAATAAATCACCAGAAAGTGATTTTGAATATTGTGAAAATCCTGAGATACTTGATTCAGACAAAGCAAGTCATCACCCCAATGAACCTACAAACAACTCACAGAGTATGCCGATGGTCGTAGCTAGGGTTACGGAGGTATCTGGATTGGAGGAAGCTCCTGGACTCTCAGCATCAGCTTTGGACGAGGAGCCCAATTCAGCAGTTCAAACACAATTACTTAGAGAATCCTCAAATTCAATGGAGCAGAACCAGAGAAGCGAAGTTCCTGGATCACAGGATGCATCAAATGCTCCTGCTGGAAATGAGGTGGTGATTGTTCCACCTCGATATTCTGGCTCTATTCCACCAACTGCACCTAGATATATGGAAAATGGTAAGGATATCAGTGGGAGGAGCTTGAAAGCAAAACCTGGTGATAACATCCTTCAAAATGGCTCTTCCAAGCCTGAAAGGGAACCAGGGAATTCTTCAAATAAAAGAACATCAGGTAAATGTGAGGAAATCGGCCACAAGGATGGATGCCCAGAAGCATCTTATGAGTACTGTGTTAAGGTGGTCAGGTGGCTGGAATGTGAGGGTTACATTGAGACCAACTTCAGAGTGAAGTTTCTGACTTGGTATAGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAAGG] [+] EMBL AK101341 [CTAGCAGAGCACTCGCGGAGGCGAGGAGAGAGAGAGAGAGAGAGAGAGGTTGGAAGAGGAGGGGAGAGTCCACGTGAGTGAGAGGAGGAGGAGGAGGAGGAGATCCCTCTCCCGCGCGCATCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAG CAGAGAATGTTGGAATATCTCTT CAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGTTGTGGAGCATGTGCAAGAGAAGGAGCCTACCCCTGAACCCAACACAGCCAACCATCAGTCCCCTGCGAAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCAACTACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCACAATTTAGCTTGCAGAGCGACTCTTAATCCAGAA GATAAATTTTGCAGACGCTGTTCATGCTGTATTTGTTTCAAGTACGATGACAATAAGGATCCTAGCCTCTGGTTATTCTGTAGTTCAGATCAACCCTTGCAGAAAGATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATCATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAACAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGGTTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAGTACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGTCCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCTGAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCTCCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAAGCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCCAAAATGAAGACAAGCTGTCAGAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCT GGGCTAGACCAAAACAAT GGGAGCCCAAAGGCAAACAGTGGT GGTCAGTCTGATCCTTCTTCAGAAGGTGTGGACTCAAATAATAACACTGCGGTGTATGCTGATCTCAATAAATCACCAGAAAGTGATTTTGAATATTGTGAAAATCCTGAGATACTTGATTCAGACAAAGCAAGTCATCACCCCAATGAACCTACAAACAACTCACAGAGTATGCCGATGGTCGTAGCTAGGGTTACGGAGGTATCTGGATTGGAGGAAGCTCCTGGACTCTCAGCATCAGCTTTGGACGAGGAGCCCAATTCAGCAGTTCAAACACAATTACTTAGAGAATCCTCAAATTCAATGGAGCAGAACCAGAGAAGCGAAGTTCCTGGATCACAGGATGCATCAAATGCTCCTGCTGGAAATGAGGTGGTGATTGTTCCACCTCGATATTCTGGCTCTATTCCACCAACTGCACCTAGATATATGGAAAATGGTAAGGATATCAGTGGGAGGAGCTTGAAAGCAAAACCTGGTGATAACATCCTTCAAAATGGCTCTTCCAAGCCTGAAAGGGAACCAGGGAATTCTTCAAATAAAAGAACATCAGGTAAATGTGAGGAAATCGGCCACAAGGATGGATGCCCAGAAGCATCTTATGAGTACTGTGTTAAGGTGGTCAGGTGGCTGGAATGTGAGGGTTACATTGAGACCAACTTCAGAGTGAAGTTTCTGACTTGGTATAGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAA ] [+] EMBL CA753634 [ GAGGAGATCCCNCNCCCGCGCGCATCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAG CAGAGAATGTNGGAATATCTCTT CAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGCTGTGGAGCATGTGCAAGAGAAGGAGCCTACCCCTGAACCCCACACAGCCAACCATCAGTCCCCTGCGAAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCACCTACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCCCCATTTAGCCTGCAGAGCGACTCTTAAT CAGAAGGATAAA TTTGCCAACGCTGTNCATGCTGTATTGGTTTCAAGTACGATGACCATAGGGATCCTA CCCCCGGGTATTCTGTAnt ] [+] EMBL AU062695 [ TCGCCGATCCCCAATTCGCCATGNATCCACCCTACGCAGGAGTACCTATTGATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTATCGAAGCGGCCAGAAAGTNCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTAGAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTNTCNANGNNNGAGAATNTTGGAATATCTNTTATAGAGTTGTGACTGGCAAATCATNTGGTGGTGGCGTTGTNGAGCATGTGCAAGAGAAGGAGC ] [+] EMBL CB670928 [ AACCCTTGCAGAAAGATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATCATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAACAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGGTTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAGTACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGTCCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCTGAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCTCCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAAGCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAANGAGTTTGGATCGTGGGAAGCCCAAATGAAG ] [+] EMBL CF325355 [ GTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGATGTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCAACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACAAGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCCAAAATGAAGACAAGCTGTCAAAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCTGGGGCTAGACCAAAACAATGGGGAGCCCAAAGGCAAACAGTGGTGGGTCAG ] [-] EMBL CB670929 [ AGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACC ] [-] EMBL CB628913 [ TCTACGTAAACACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCCATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTACCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCAGTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGT ] [+] EMBL AK062072 [ ACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCTAGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAAGG] [+] EMBL CA764167 [ GATGTACCGGGAAACATTGGGATGAAGCAGGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGATGTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATGGGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAATGTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAGTTCTACCGTTTGAGAAGTTAAATTTATGTGCACA ] consensusID : consensus_12633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GCTNGGNAAGAGGAGGGGAGANTCCACGTAANNANAGGAGGAGGANANNGAGGAGATCCCTCTCCCGCNCGCATCCNCCCCTNTGGCCGATCCCCAATTNGCCATGGNTCCACCCTACGCAGGAGTACCTATTGNTCCTGCTAAATNCCGNTTGATGAGTGTGGATGAAAAGCGGGAACTTNTCCGTNAATTATCGAAGCGGCCAGAAAGTGCTCCTNACAAACTGCAGTCTTGGAGTCGCCGTGAAATTNTAGAGATTCTTTNTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAGCAGAGAATGTTNGAATATCTCTTCAGAGTTGTGACTGGCAAATAATCTGGTGGTGGCGTTNTGGAGCATGTGCA] [+] EMBL AU082889 [GCTNGGNAAGAGGAGGGGAGANTCCACGTAANNANAGGAGGAGGANANNGAGGAGATCCCTCTCCCGCNCGCATCCNCCCCTNTGGCCGATCCCCAATTNGCCATGGNTCCACCCTACGCAGGAGTACCTATTGNTCCTGCTAAATNCCGNTTGATGAGTGTGGATGAAAAGCGGGAACTTNTCCGTNAATTATCGAAGCGGCCAGAAAGTGCTCCTNACAAACTGCAGTCTTGGAGTCGCCGTGAAATTNTAGAGATTCTTTNTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAGCAGAGAATGTTNGAATATCTCTTCAGAGTTGTGACTGGCAAATAATCTGGTGGTGGCGTTNTGGAGCATGTGCA] consensusID : consensus_12633#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [AAAGGCCNCCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTNCCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAAAAAAAAAAAAA] [+] EMBL AU082890 [AAAGGCCNCCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAAAGAGAGGGGAGCTCGTNCCGTTCTCTTTGTAGGGGAGCATATTTTGGTCCCATTCTTTCGTAGCAGATCGTTGCATTGATTCTTCATTGGAAATTTCATTGAAGCGGTTAACTTATACAATCTGTTCATTGCTCTACTTTATTTGCTATGACAGTAGGTTTAATTTATCCAGCAACTTATTTCTGTTTTTTCACTTAGGAGTCCATAGTTTACAGTTCTGTTATCCGTACCGCCATGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGGTCAGCTTTAGGAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_12633#0 CTAGCAGAGCACTCGCGGAGGCGAGGAGAGAGAGAGAGAGAGAGAGAGGTTGGAAGAGGA 60 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GGGGAGAGTCCACGTGAGTGAGAGGAGGAGGAGGAGGAGGAGATCCCTCTCCCGCGCGCA 120 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 TCCGCCCCTCTCGCCGATCCCCAATTCGCCATGGATCCACCCTACGCAGGAGTACCTATT 180 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GATCCTGCTAAATGCCGATTGATGAGTGTGGATGAAAAGCGGGAACTTGTCCGTGAATTA 240 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 TCGAAGCGGCCAGAAAGTGCTCCTGACAAACTGCAGTCTTGGAGTCGCCGTGAAATTGTA 300 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GAGATTCTTTGTGCTGATTTAGGAAGGGAAAGGAAGTACACTGGATTATCGAAGCAGAGA 360 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ATGTTGGAATATCTCTTCAGAGTTGTGACTGGCAAATCATCTGGTGGTGGCGTTGTGGAG 420 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 CATGTGCAAGAGAAGGAGCCTACCCCTGAACCCAACACAGCCAACCATCAGTCCCCTGCG 480 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 AAACGGCAGCGAAAGAGTGACAACCCATCACGACTACCAATTGTTGCAAGCAGTCCAACT 540 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ACAGAAATACCCAGGCCAGCAAGTAATGCTCGCTTCTGCCACAATTTAGCTTGCAGAGCG 600 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ACTCTTAATCCAGAAGATAAATTTTGCAGACGCTGTTCATGCTGTATTTGTTTCAAGTAC 660 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GATGACAATAAGGATCCTAGCCTCTGGTTATTCTGTAGTTCAGATCAACCCTTGCAGAAA 720 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GATTCTTGTGTATTTTCGTGCCATCTTGAATGTGCTCTTAAGGATGGAAGAACTGGCATC 780 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ATGCAGAGTGGGCAGTGCAAGAAACTTGATGGTGGTTATTACTGCACTCGCTGTCGGAAA 840 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 CAGAATGATCTGCTTGGGTCCTGGAAGAAACAACTGGTGATAGCTAAAGATGCTCGCCGG 900 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 TTGGATGTATTGTGTCATCGGATTTTTTTGAGTCATAAGATTCTTGTCTCCACGGAGAAG 960 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 TACTTGGTTTTGCATGAAATTGTTGACACAGCGATGAAGAAACTGGAGGCTGAGGTTGGT 1020 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 CCTATATCTGGAGTTGCAAATATGGGTCGTGGAATTGTGAGCCGGCTTGCTGTTGGTGCT 1080 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GAAGTTCAGAAACTTTGTGCTCGAGCAATAGAAACCATGGAGTCTCTGTTTTGTGGATCT 1140 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 CCTTCTAACTTGCAATTTCAACGTTCACGGATGATACCATCAAACTTCGTAAAGTTTGAA 1200 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GCTATAACCCAAACATCTGTCACTGTAGTTTTGGATTTGGGTCCTATACTTGCTCAAGAT 1260 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GTAACATGCTTTAATGTATGGCACAGAGTGGCAGCCACAGGCTCGTTCTCATCAAGTCCA 1320 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ACTGGCATCATACTTGCACCATTAAAAACGTTAGTGGTCACTCAACTTGTGCCAGCTACA 1380 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 AGCTATATATTCAAGGTAGTTGCCTTCAGTAACTACAAGGAGTTTGGATCGTGGGAAGCC 1440 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 AAAATGAAGACAAGCTGTCAGAAGGAAGTTGATCTGAAGGGTTTGATGCCAGGTGGGTCT 1500 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GGGCTAGACCAAAACAATGGGAGCCCAAAGGCAAACAGTGGTGGTCAGTCTGATCCTTCT 1560 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 TCAGAAGGTGTGGACTCAAATAATAACACTGCGGTGTATGCTGATCTCAATAAATCACCA 1620 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GAAAGTGATTTTGAATATTGTGAAAATCCTGAGATACTTGATTCAGACAAAGCAAGTCAT 1680 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 CACCCCAATGAACCTACAAACAACTCACAGAGTATGCCGATGGTCGTAGCTAGGGTTACG 1740 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GAGGTATCTGGATTGGAGGAAGCTCCTGGACTCTCAGCATCAGCTTTGGACGAGGAGCCC 1800 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 AATTCAGCAGTTCAAACACAATTACTTAGAGAATCCTCAAATTCAATGGAGCAGAACCAG 1860 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 AGAAGCGAAGTTCCTGGATCACAGGATGCATCAAATGCTCCTGCTGGAAATGAGGTGGTG 1920 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ATTGTTCCACCTCGATATTCTGGCTCTATTCCACCAACTGCACCTAGATATATGGAAAAT 1980 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GGTAAGGATATCAGTGGGAGGAGCTTGAAAGCAAAACCTGGTGATAACATCCTTCAAAAT 2040 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GGCTCTTCCAAGCCTGAAAGGGAACCAGGGAATTCTTCAAATAAAAGAACATCAGGTAAA 2100 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 TGTGAGGAAATCGGCCACAAGGATGGATGCCCAGAAGCATCTTATGAGTACTGTGTTAAG 2160 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GTGGTCAGGTGGCTGGAATGTGAGGGTTACATTGAGACCAACTTCAGAGTGAAGTTTCTG 2220 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ACTTGGTATAGCCTTCGTGCTACCCCTCATGACAGGAAGATAGTCAGCGTCTACGTAAAC 2280 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ACTCTTATTGATGATCCTGTTAGCCTTTCTGGCCAGCTTGCTGACACTTTCTCTGAGGCC 2340 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 ATCTACAGCAAAAGGCCACCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAA 2400 consensus_12633#2 ----------AAAGGCCNCCTTCTGTTCGCTCCGGTTTCTGCATGGAACTTTGGCATTAA 50 consensus_12633#1 ---------GCTNGGNAAGAGGAGGGGAGANTCCACGTAANNANAGGAGGAGGANANNGA 51 ** * * * * * * * * * * consensus_12633#0 AGAGAGGGGA-----GCTCGTACCGTTCTCTTTGTAGGGGAGCATATTT----TGGTCCC 2451 consensus_12633#2 AGAGAGGGGA-----GCTCGTNCCGTTCTCTTTGTAGGGGAGCATATTT----TGGTCCC 101 consensus_12633#1 GGAGATCCCTCTCCCGCNCGCATCCNCCCCTNTGGCCGATCCCCAATTNGCCATGGNTCC 111 **** ** ** * * ** ** * * *** *** ** consensus_12633#0 ATTCTTTCGTAGCAG-----ATCGTTGC-ATTGATTCTTCATTGG-AAATTTCATTGAAG 2504 consensus_12633#2 ATTCTTTCGTAGCAG-----ATCGTTGC-ATTGATTCTTCATTGG-AAATTTCATTGAAG 154 consensus_12633#1 ACCCTA-CGCAGGAGTACCTATTGNTCCTGCTAAATNCCGNTTGATGAGTGTGGATGAAA 170 * ** ** ** ** ** * * * * * * *** * * * **** consensus_12633#0 CG-GTTAACTTATAC--AATCTGTTCA--TTGCTCTACTTTATTTGCTATGA-CAGTAGG 2558 consensus_12633#2 CG-GTTAACTTATAC--AATCTGTTCA--TTGCTCTACTTTATTTGCTATGA-CAGTAGG 208 consensus_12633#1 AGCGGGAACTTNTCCGTNAATTATCGAAGCGGCCAGAAAGTGCTCCTNACAAACTGCAGT 230 * * ***** * * * * * * ** * * * * * * * ** consensus_12633#0 TTTAATTTATCCAGCAACTTAT-----TTCTGTTTTTTCACTTAGGAGTCCATAGTTTAC 2613 consensus_12633#2 TTTAATTTATCCAGCAACTTAT-----TTCTGTTTTTTCACTTAGGAGTCCATAGTTTAC 263 consensus_12633#1 CTTGGAGTCGCCGTGAAATTNTAGAGATTCTTTNTGCTGATTTAGGAAGGGAAAGGAAGT 290 ** * ** ** ** * **** * * * * ****** * ** consensus_12633#0 A-GTTCTGTTATCCGTACCGCCA-TGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGG 2671 consensus_12633#2 A-GTTCTGTTATCCGTACCGCCA-TGTTGGTACAGAGCATCAAGAGCTGTGCTCTTTTGG 321 consensus_12633#1 ACACTGGATTATCGAAGCAGAGAATGTTNGAATATCTCTTCA-GAGTTGTGACTGGCAAA 349 * * ***** * * * **** * * * * *** *** **** consensus_12633#0 TCAGCTTTAGGAACATTCTGAAATTGCCACAAGTGTGTGGGTACCTGAAGCTCTGTTGCT 2731 consensus_12633#2 TCAGCTTTAGGAAAAAAAAAAAAA------------------------------------ 345 consensus_12633#1 TAATCTGGTGGTGGCGTTNTGGAGCATGTGCA---------------------------- 381 * * ** ** * consensus_12633#0 AGCTGCTGTGAGAGGGAGGGATGATTCTCAGGATGTACCGGGAAACATTGGGATGAAGCA 2791 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GGCTTCGTGTCGACACTGACGAATCCGAGCTAACCATGCCTTGTCAGGATAAATGATGAT 2851 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GTGGTGCTGTATCTGGGGTTGAAAGAAATGCAAATGTGCTGCTGACTTCTATGGGGAATG 2911 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GGAGGAGTCCTGATGTTTTTCCTTTTCTTAAGACAATAGATGCAAAATGTCTGCACTAAT 2971 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 GTTATGTTCGGTTTAGACCCTTGCTTTTACTGTCTCCTACTGCACTTTCTTGCCTTCTAG 3031 consensus_12633#2 ------------------------------------------------------------ consensus_12633#1 ------------------------------------------------------------ consensus_12633#0 TTCTACCGTTTGAGAAGTTAAATTTATGTGCACATGCAAAAAGG 3075 consensus_12633#2 -------------------------------------------- consensus_12633#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||