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Oryza sativa
cluster # 12640 cluster # 12640       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_12640#0 length = 1474 sequences # 9  
consensus_12640#1 length = 576 sequences # 1  
consensus_12640#2 length = 440 sequences # 1  

consensusID : consensus_12640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1474
fasta sequence
                              [CGCCTCGGGTGGCCGAGGCCTTGGAAGCCGCAGGTAGGTAGAACCCCCTTGCCGTCGCCGGCCATGGCAGCGGCGGGGGCCGGGGCGGGGGCGCCGGATCGGGCGGCGCTGACGGTGGGCCCGGGGATGGACATGCCGATCATGCACGACAGCGACCGGTACGAGCTCGTGCGCGACATCGGCTCCGGCAACTTCGGCGTCGCCCGCCTCATGCGC-ACCGCCGCACCATGGAGCTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGATAGATGATAATGTCCAGCGTGAGATTATAAATCACCGATCGTTGAAACATCCTAACATTATTAGGTTTAAGGAGGTTATTTTAACCCCAACTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAGTCAGCTACTGCC-ATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATATGTTATGGTAGTTGGTGCATATCC-TTTCGAGGATCCAG-AAGAGCCTAAGAACTT-CCGTAAAA-CAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCT--CCAGAATG-TAGGCATC-TAATTTCGAGGA-TTTTTGTC-GGGGATCCGTCTTTGAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCA-TGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCCCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAACACATGCGTTACAAATGTGCAAGTTATTTAATGTCAGAAATTTAGAGTCAAAAAAAAAA]

[+] EMBL CA758857             [CGCCTCGGGTGGCCGAGGCCTTGGAAGCCGCAGGTAGGTAGAACCCCCTTGCCGTCGCCGGCCATGGCAGCGGCGGGGGCCGGGGCGGGGGCGCCGGATCGGGCGGCGCTGACGGTGGGCCCGGGGATGGACATGCCGATCATGCACGACAGCGACCGGTACGAGCTCGTGCGCGACATCGGCTCCGGCAACTTCGGCGTCGCCCGCCTCATGCGCGACCGCCGCACCATGGAGCTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGATAGATGATAATGTCCAGCGTGAGATTATAAATCACCGATCGTTGAAACATCCTAACATTATTAGGTTTAAGGAGGTTATTTTAACCCCAACTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAGTCAGCTACTGCCNATTC ATGGCAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAGNTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BP185021             [                                                                                                                                                                                                                       a cgaggCGCACCATGGAGCTCGTCGCCGTCAAGTACATCGAGCGCGGCGAGAAGATAGATGATAATGTCCAGCGTGAGATTATAAATCACCGATCGTTGAAACATCCTAACATTATTAGGTTTAAGGAGGTTATTTTAACCCCAACTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAGTCAGCTACTGCC ATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATATGTTATGGTAGTTGGTGCATATCC TTTCGAGGATCCAG AAGAGCCTAAGAACTT CCGTAAAA CAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCT  CCAGAATG TAGGCATC TAATTTCGAGGA TT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK060479             [                                                                                                                                                                                                                                                                                                                              CATCCTAACATTATTAGGTTTAAGGAGGTTATTTTAACCCCAACTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTAAGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAGTCAGCTACTGCC ATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATATGTCATGGTAGTTGGTGCATATCC TTTCGAGGATCCAG AAGAGCCTAAGAACTT CCGTAAAA CAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCT  CCAGAATG TAGGCATC TAATTTCGAGGA TTTTTGTC GGGGATCCGTCTTTGAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCA TGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCCCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAACACATGCGTTACAAATGTGCAAGTTATTTAATGTCAGAA                    ]
[+] EMBL AK104299             [                                                                                                                                                                                                                                                                                                                                                                                                                                TTGTAAGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAGTCAGCTACTGCC ATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATATGTTATGGTAGTTGGTGCATATCC TTTCGAGGATCCAG AAGAGCCTAAGAACTT CCGTAAAA CAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCT  CCAGAATG TAGGCATC TAATTTCGAGGA TTTTTGTC GGGGATCCGTCTTTGAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCA TGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCCCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAACACATGCGTTACAAATGTGCAAGTTAT                                ]
[+] EMBL AU081021             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAGTCAGCTACTGCC ATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATATGTTATGGTAGTTGGTGCATATCC TTTCGAGGATCCAG AAGAGCCTAAGAACTT CCGTAAAA CAATTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CA882864             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCCAGCAGCTTATCTCGGGAGTCAGCTACTGCC ATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAGTTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTCTGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTATATGTTATGGTAGTTGGTGCATATCC TTTCGAGGATCCAG AAGAGCCTAAGAACTT CCGTAAAA CAATTCAGCGTATCTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU081022             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CATATCCTTTTCGAGGATCCAGAAAGAGCCCTAGGACTTCCCGTAAAACCAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCT  CCAGAATG TAGGCATC TAATTTCGAGGA TTTTTGTC GGGGATCCGTCTTTGAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCA TGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCNCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAAaaaaa                                                      ]
[+] EMBL BQ908815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gnGGACATATCTCCCCAGAATGTTAGCCATCNTAATTTCGAGGATTTTTTGTCGGGGGATCCGTCTTTGAGGATAACAATCCCCGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCACTGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCCACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGCTCCCATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCCCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAACACATGCGTTACAAATGTGCAAGTTATTTAATGTCAGAAATTTAGAGTCAAAAAAAAAA]
[-] EMBL CF324838             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCA TGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCCCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAAaaaaa                                                      ]


>consensus_12640#0 CGCCTCGGGTGGCCGAGGCCTTGGAAGCCGCAGGTAGGTAGAACCCCCTTGCCGTCGCCG GCCATGGCAGCGGCGGGGGCCGGGGCGGGGGCGCCGGATCGGGCGGCGCTGACGGTGGGC CCGGGGATGGACATGCCGATCATGCACGACAGCGACCGGTACGAGCTCGTGCGCGACATC GGCTCCGGCAACTTCGGCGTCGCCCGCCTCATGCGCACCGCCGCACCATGGAGCTCGTCG CCGTCAAGTACATCGAGCGCGGCGAGAAGATAGATGATAATGTCCAGCGTGAGATTATAA ATCACCGATCGTTGAAACATCCTAACATTATTAGGTTTAAGGAGGTTATTTTAACCCCAA CTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTA AGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAG TCAGCTACTGCCATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGC TGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAG TTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTC TGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTAT ATGTTATGGTAGTTGGTGCATATCCTTTCGAGGATCCAGAAGAGCCTAAGAACTTCCGTA AAACAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTC CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGAGGATAACAA TCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACG ATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCATGGATCAGA TCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCC TAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTG ATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACT GAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAG AATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCCATGAACT CATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCC CCCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAACACATGCGTTACAAATGTGCAAGTT ATTTAATGTCAGAAATTTAGAGTCAAAAAAAAAA



consensusID : consensus_12640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence
                              [AGGACGAGACAAGGGCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGAGGATATCAATCCCAGAAATGCGGAGCCATGGCTGGTTCTTGAAGACCCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCATGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCCGCTTGCTCTCGAATAAGCCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACTCCAGCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAGCTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCAAAAAAAAAAAAAAAAA]

[-] EMBL CA763699             [AGGACGAGACAAGGGCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGAGGATATCAATCCCAGAAATGCGGAGCCATGGCTGGTTCTTGAAGACCCTTCCTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAATGCAAACCATGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCCGCTTGCTCTCGAATAAGCCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACTCCAGCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAGCTGGGGTTACTTCCCTGGAATAACAGCTTTCCTCCTCCCCAAAAAAAAAAAAAAAAA]


>consensus_12640#1 AGGACGAGACAAGGGCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATC CGTCTTTGAGGATATCAATCCCAGAAATGCGGAGCCATGGCTGGTTCTTGAAGACCCTTC CTGCAGATTTGATGGACGATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCAA TGCAAACCATGGATCAGATCATGCAAATTTTAACTGAGGCCACCATACCACCCGCTTGCT CTCGAATAAGCCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCG ATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCA TCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCTGATGTGTACCTTGTCAAAGTACTA GCAGCCCTTTGTGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACTCCA GCGATGTTCCCATGAACTCATGATGCTGTTGTAATTGAGCTGGGGTTACTTCCCTGGAAT AACAGCTTTCCTCCTCCCCAAAAAAAAAAAAAAAAA



consensusID : consensus_12640#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [GNCACACCTTGATCACGCACATATGCATNACCNTGGTATCGAGATCATGCAAATTTTAACTGAGCCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCCTGATGTGTACCTTGTCAAAGTACTAGCACCCTTTGTGAAAAGAATCGTTCTGTATTTNGCTTAGTTTCTGCCGTGGAACCCCAGCGANGTTCCCANGAACTCATGATCCTGTTGTAATTGAACGGGGGTTACTTCCGGGAATAACANCTTCCCTCCCCCCCCATGCGTAGAGCCGGNTCACCTTTAAGTTTCAAAAAA]

[+] EMBL BQ907970             [GNCACACCTTGATCACGCACATATGCATNACCNTGGTATCGAGATCATGCAAATTTTAACTGAGCCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCCCCTGATGTGTACCTTGTCAAAGTACTAGCACCCTTTGTGAAAAGAATCGTTCTGTATTTNGCTTAGTTTCTGCCGTGGAACCCCAGCGANGTTCCCANGAACTCATGATCCTGTTGTAATTGAACGGGGGTTACTTCCGGGAATAACANCTTCCCTCCCCCCCCATGCGTAGAGCCGGNTCACCTTTAAGTTTCAAAAAA]


>consensus_12640#2 GNCACACCTTGATCACGCACATATGCATNACCNTGGTATCGAGATCATGCAAATTTTAAC TGAGCCCACCATACCACCTGCTTGCTCTCGAATAAACCACATCCTAACTGATGGACTCGA CCTAGACGATGACATGGATGACCTCGATTCCGACTCAGATATTGATGTTGATAGCAGCGG CGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAGAGAACTGAAGGGGCAGGGTGCC CCTGATGTGTACCTTGTCAAAGTACTAGCACCCTTTGTGAAAAGAATCGTTCTGTATTTN GCTTAGTTTCTGCCGTGGAACCCCAGCGANGTTCCCANGAACTCATGATCCTGTTGTAAT TGAACGGGGGTTACTTCCGGGAATAACANCTTCCCTCCCCCCCCATGCGTAGAGCCGGNT CACCTTTAAGTTTCAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_12640#0      CGCCTCGGGTGGCCGAGGCCTTGGAAGCCGCAGGTAGGTAGAACCCCCTTGCCGTCGCCG 60
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      GCCATGGCAGCGGCGGGGGCCGGGGCGGGGGCGCCGGATCGGGCGGCGCTGACGGTGGGC 120
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      CCGGGGATGGACATGCCGATCATGCACGACAGCGACCGGTACGAGCTCGTGCGCGACATC 180
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      GGCTCCGGCAACTTCGGCGTCGCCCGCCTCATGCGCACCGCCGCACCATGGAGCTCGTCG 240
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      CCGTCAAGTACATCGAGCGCGGCGAGAAGATAGATGATAATGTCCAGCGTGAGATTATAA 300
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      ATCACCGATCGTTGAAACATCCTAACATTATTAGGTTTAAGGAGGTTATTTTAACCCCAA 360
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      CTCATCTTGCTATTGTCATGGAATATGCCTCTGGTGGTGAGCTTTTCGAGAGAATTTGTA 420
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      AGAATGTACGGTTCAGTGAAGATGAGGCTCGCTACTTCTTCCAGCAGCTTATCTCGGGAG 480
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      TCAGCTACTGCCATTCAATGCAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGC 540
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      TGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGTCTTCAG 600
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      TTCTCCATTCACAACCAAAATCCACTGTAGGAACCCCTGCTTATATTGCACCTGAAGTTC 660
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      TGTTGAAGAAAGAATACGATGGCAAGACTGCTGATGTATGGTCCTGTGGTGTGACTCTAT 720
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      ATGTTATGGTAGTTGGTGCATATCCTTTCGAGGATCCAGAAGAGCCTAAGAACTTCCGTA 780
consensus_12640#1      ------------------------------------------------------------
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      AAACAATTCAGCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTC 840
consensus_12640#1      ------------------------------------------AGGACGAGACAAGGGCTC 18
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGAGGATAACAA 900
consensus_12640#1      CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGAGGATATCAA 78
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      TCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTCCTGCAGATTTGATGGACG 960
consensus_12640#1      TCCCAGAAATGCGGAGCCATGGCTGGTTCTTGAAGACCCTTCCTGCAGATTTGATGGACG 138
consensus_12640#2      ------------------------------------------------------------
                                                                                   

consensus_12640#0      ATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCA---ATGCA-AACCATGG-A 1015
consensus_12640#1      ATGATAGTATGAGCAGCCAGTATGAGGAACCTGATCAGCCA---ATGCA-AACCATGG-A 193
consensus_12640#2      ----------------------GNCACACCTTGATCACGCACATATGCATNACCNTGGTA 38
                                                  * * ******  **   *****  *** *** *

consensus_12640#0      TC-AGATCATGCAAATTTTAACTGAGGCCACCATACCACCTGCTTGCTCTCGAATAAACC 1074
consensus_12640#1      TC-AGATCATGCAAATTTTAACTGAGGCCACCATACCACCCGCTTGCTCTCGAATAAGCC 252
consensus_12640#2      TCGAGATCATGCAAATTTTAACTGAGCCCACCATACCACCTGCTTGCTCTCGAATAAACC 98
                       ** *********************** ************* **************** **

consensus_12640#0      ACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAG 1134
consensus_12640#1      ACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAG 312
consensus_12640#2      ACATCCTAACTGATGGACTCGACCTAGACGATGACATGGATGACCTCGATTCCGACTCAG 158
                       ************************************************************

consensus_12640#0      ATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAG 1194
consensus_12640#1      ATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAG 372
consensus_12640#2      ATATTGATGTTGATAGCAGCGGCGAGATCGTCTATGCGATGTAAGTCATCGACCAACAAG 218
                       ************************************************************

consensus_12640#0      AGAACTGAAGGGGCAGGGTGCCC-TGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTG 1253
consensus_12640#1      AGAACTGAAGGGGCAGGGTGCCC-TGATGTGTACCTTGTCAAAGTACTAGCAGCCCTTTG 431
consensus_12640#2      AGAACTGAAGGGGCAGGGTGCCCCTGATGTGTACCTTGTCAAAGTACTAGCA-CCCTTTG 277
                       *********************** **************************** *******

consensus_12640#0      TGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACCCCAGCGATGTTCCC 1313
consensus_12640#1      TGAAAAGAATCGTTCTGTATTTTGCTTAGTTTCTTGCCGTGGAACTCCAGCGATGTTCCC 491
consensus_12640#2      TGAAAAGAATCGTTCTGTATTTNGCTTAGTTTCT-GCCGTGGAACCCCAGCGANGTTCCC 336
                       ********************** *********** ********** ******* ******

consensus_12640#0      ATGAACTCATGATGCTGTTGTAATTGAACTGGGGTTACTTCCCTGGAATAACAGCTTTCC 1373
consensus_12640#1      ATGAACTCATGATGCTGTTGTAATTGAGCTGGGGTTACTTCCCTGGAATAACAGCTTTCC 551
consensus_12640#2      ANGAACTCATGATCCTGTTGTAATTGAACGGGGGTTACTTCCG-GGAATAACANCTTCCC 395
                       * *********** ************* * ************  ********* *** **

consensus_12640#0      TCCTCCCCCCATTGCTGAGGCCTGGTTACCTTTAAGCTTCAACACATGCGTTACAAATGT 1433
consensus_12640#1      TCCTCCCCAAAAAAAAAAAAAAAAA----------------------------------- 576
consensus_12640#2      TCCCCCCCCATGCGTAGAGCCGGNTCACCTTTAAGTTTCAAAAAA--------------- 440
                       *** ****         *                                          

consensus_12640#0      GCAAGTTATTTAATGTCAGAAATTTAGAGTCAAAAAAAAAA 1474
consensus_12640#1      -----------------------------------------
consensus_12640#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)